Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Reverse (-)

33812547 .. 33812798

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0194100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGAAGATGAAAATATTGAACTACTTTCTCAAAGCCAACAACAACAAAGAGCGGAAGCTAATGCTTGGAGAATTAGCATTGCTGATGCTATGTGGAATGATAGGCCGCGGAATGATGATAATGGAAATCAAGAGGATAACAATGAGGATCAAGACAATGACAATGAGAATAATGAGGAACACATAAATGATGAGAATCAAGAGGTTTACGATGATAATGATGTTGGAATGGAGGAGTATGCATCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

83

Amino Acids

9.79

Weight (kDa)

4.05

Isoelectric Point (pI)

65.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	53
AccII	CGCG	1 cut(s)	109
AciI	CCGC	3 cut(s)	53, 107, 109
AclWI	GGATC	1 cut(s)	156
AgsI	TTSAA	1 cut(s)	20
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
AlwI	GGATC	1 cut(s)	156
AoxI	GGCC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	76
BsaBI	GATNNNNATC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	107
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	107
BseJI	GATNNNNATC	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	248
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	106
BsnI	GGCC	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	3 cut(s)	53, 107, 109
BspANI	GGCC	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	109
BspPI	GGATC	1 cut(s)	156
BsrBI	CCGCTC	1 cut(s)	53
BsrDI	GCAATG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	1 cut(s)	148
BstDSI	CCRYGG	1 cut(s)	107
BstFNI	CGCG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	151
BstMBI	GATC	1 cut(s)	148
BstUI	CGCG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	106
BtgI	CCRYGG	1 cut(s)	107
Cfr42I	CCGCGG	1 cut(s)	110
CviJI	RGCY	3 cut(s)	36, 59, 106
CviKI_1	RGCY	3 cut(s)	36, 59, 106
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	244
FaiI	YATR	3 cut(s)	92, 185, 240
Fnu4HI	GCNGC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	107
HaeIII	GGCC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	196
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188III	TCNNGA	3 cut(s)	131, 152, 200
Hpy8I	GTNNAC	1 cut(s)	208
HpyCH4V	TGCA	1 cut(s)	242
KspI	CCGCGG	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	148
LweI	GCATC	1 cut(s)	76
MalI	GATC	1 cut(s)	150
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	17
MluCI	AATT	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	205
MnlI	CCTC	5 cut(s)	127, 139, 169, 196, 226
Mph1103I	ATGCAT	1 cut(s)	244
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	109
NdeII	GATC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	186
SacII	CCGCGG	1 cut(s)	110
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	148
SetI	ASST	2 cut(s)	61, 207
SfaNI	GCATC	1 cut(s)	76
Sfr303I	CCGCGG	1 cut(s)	110
SgeI	CNNG	5 cut(s)	78, 120, 143, 164, 212
SgrBI	CCGCGG	1 cut(s)	110
SmiMI	CAYNNNNRTG	1 cut(s)	186
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	3 cut(s)	53, 107, 109
SspI	AATATT	1 cut(s)	16
TasI	AATT	1 cut(s)	72
TauI	GCSGC	1 cut(s)	109
TfiI	GAWTC	1 cut(s)	196
TspDTI	ATGAA	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.