Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028070.1

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 645

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028070.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 535 bp

aaggttgagtggggtatctcagcaccagagtaatttgaacaactctttcataagttctcaagacgcatcttttggagccatgtcgtcgctcaatgggattgatcttcagactctagccgccactggtcaactacctgctcaaagccttgccacacttcaagcagccgggctcagtaggtcaacagcaaaatctggcataccaatgccccttgttgatcaaaggaacttgttcagctttgaaaatccaaagttgaggtttgcagaggggcagcaacatcatggcagtggtaaaccaatgaacttacttcacggcattccaacgactatggaggcaaagcagcttgccaacttgcaccagtctgcacagtcccttggggctgtgaatatgcaagtcaatgcccatggagtccaaaacaactctctatatatgataggtcaaccacagtcaagaggacagatcctgaatgaaagtcctgggactcatgttcctaggcttccatcatcaattgggcagcctatggtatcgaacggtatt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

178

Amino Acids

18.82

Weight (kDa)

9.81

Isoelectric Point (pI)

48.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AciI	CCGC	1 cut(s)	118
AclWI	GGATC	1 cut(s)	452
AcuI	CTGAAG	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	38, 159, 240
AjnI	CCWGG	1 cut(s)	473
AluBI	AGCT	2 cut(s)	235, 341
AluI	AGCT	2 cut(s)	235, 341
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	1 cut(s)	461
ApeKI	GCWGC	4 cut(s)	162, 269, 338, 512
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
Asp700I	GAANNNNTTC	1 cut(s)	228
AspA2I	CCTAGG	1 cut(s)	489
AsuC2I	CCSGG	1 cut(s)	167
AvrII	CCTAGG	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	172
BbvI	GCAGC	4 cut(s)	174, 281, 350, 524
BccI	CCATC	1 cut(s)	506
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	475
BclI	TGATCA	1 cut(s)	215
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	2 cut(s)	114, 490
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	5 cut(s)	118, 163, 270, 339, 513
BlnI	CCTAGG	1 cut(s)	489
BlsI	GCNGC	5 cut(s)	119, 164, 271, 340, 514
Bme1390I	CCNGG	2 cut(s)	167, 475
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	2 cut(s)	167, 475
BmsI	GCATC	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	43
BpuMI	CCSGG	1 cut(s)	167
BsaJI	CCNNGG	4 cut(s)	371, 401, 474, 489
Bse1I	ACTGG	2 cut(s)	128, 356
BseBI	CCWGG	1 cut(s)	475
BseDI	CCNNGG	4 cut(s)	371, 401, 474, 489
BseMII	CTCAG	2 cut(s)	33, 185
BseNI	ACTGG	2 cut(s)	128, 356
BseXI	GCAGC	4 cut(s)	174, 281, 350, 524
BsgI	GTGCAG	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	166
BslFI	GGGAC	2 cut(s)	353, 491
BsmFI	GGGAC	2 cut(s)	353, 491
BsmI	GAATGC	1 cut(s)	313
Bsp1286I	GDGCHC	1 cut(s)	172
Bsp143I	GATC	3 cut(s)	101, 215, 457
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	1 cut(s)	118
BspCNI	CTCAG	2 cut(s)	32, 184
BspLI	GGNNCC	1 cut(s)	77
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	452
BsrI	ACTGG	2 cut(s)	128, 356
BssECI	CCNNGG	4 cut(s)	371, 401, 474, 489
BssMI	GATC	3 cut(s)	101, 215, 457
BssT1I	CCWWGG	3 cut(s)	371, 401, 489
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	3 cut(s)	367, 445, 531
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	19, 171
BstDSI	CCRYGG	1 cut(s)	401
BstKTI	GATC	3 cut(s)	104, 218, 460
BstMBI	GATC	3 cut(s)	101, 215, 457
BstNI	CCWGG	1 cut(s)	475
BstSCI	CCNGG	2 cut(s)	165, 473
BstV1I	GCAGC	4 cut(s)	174, 281, 350, 524
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	401
BtsI	GCAGTG	1 cut(s)	290
BtsIMutI	CAGTG	2 cut(s)	121, 290
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	343
CaiI	CAGNNNCTG	1 cut(s)	461
CseI	GACGC	1 cut(s)	72
CviAII	CATG	4 cut(s)	80, 279, 402, 483
DdeI	CTNAG	2 cut(s)	19, 171
DpnI	GATC	3 cut(s)	103, 217, 459
DpnII	GATC	3 cut(s)	101, 215, 457
Eco130I	CCWWGG	3 cut(s)	371, 401, 489
Eco24I	GRGCYC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	90
EcoRII	CCWGG	1 cut(s)	473
EcoT14I	CCWWGG	3 cut(s)	371, 401, 489
EcoT38I	GRGCYC	1 cut(s)	172
ErhI	CCWWGG	3 cut(s)	371, 401, 489
FaeI	CATG	4 cut(s)	83, 282, 405, 486
FaqI	GGGAC	2 cut(s)	353, 491
FatI	CATG	4 cut(s)	79, 278, 401, 482
FbaI	TGATCA	1 cut(s)	215
Fnu4HI	GCNGC	5 cut(s)	118, 163, 270, 339, 513
FriOI	GRGCYC	1 cut(s)	172
Fsp4HI	GCNGC	5 cut(s)	118, 163, 270, 339, 513
FspBI	CTAG	2 cut(s)	114, 490
GluI	GCNGC	5 cut(s)	118, 163, 270, 339, 513
HapII	CCGG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	83, 282, 405, 486
HincII	GTYRAC	3 cut(s)	129, 181, 438
HindII	GTYRAC	3 cut(s)	129, 181, 438
HinfI	GANTC	3 cut(s)	110, 406, 479
HpaII	CCGG	1 cut(s)	166
Hpy166II	GTNNAC	4 cut(s)	129, 181, 291, 438
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	3 cut(s)	60, 448, 461
Hpy8I	GTNNAC	4 cut(s)	129, 181, 291, 438
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4III	ACNGT	3 cut(s)	367, 445, 531
HpyCH4V	TGCA	4 cut(s)	261, 353, 363, 389
HpyF3I	CTNAG	2 cut(s)	19, 171
Hsp92II	CATG	4 cut(s)	83, 282, 405, 486
Ksp22I	TGATCA	1 cut(s)	215
Kzo9I	GATC	3 cut(s)	101, 215, 457
LmnI	GCTCC	1 cut(s)	75
LpnPI	CCDG	9 cut(s)	39, 109, 148, 178, 179, 369, 460, 474, 487
Lsp1109I	GCAGC	4 cut(s)	174, 281, 350, 524
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	2 cut(s)	114, 490
MalI	GATC	3 cut(s)	103, 217, 459
MboI	GATC	3 cut(s)	101, 215, 457
MboII	GAAGA	1 cut(s)	96
MfeI	CAATTG	1 cut(s)	505
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	172
MluCI	AATT	2 cut(s)	32, 505
MlyI	GAGTC	3 cut(s)	104, 415, 473
MmeI	TCCRAC	1 cut(s)	342
MnlI	CCTC	4 cut(s)	247, 257, 323, 444
MroXI	GAANNNNTTC	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	201, 283
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	167, 475
MunI	CAATTG	1 cut(s)	505
Mva1269I	GAATGC	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	475
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	401
NdeII	GATC	3 cut(s)	101, 215, 457
NlaIII	CATG	4 cut(s)	83, 282, 405, 486
NlaIV	GGNNCC	1 cut(s)	77
PctI	GAATGC	1 cut(s)	313
PdmI	GAANNNNTTC	1 cut(s)	228
PkrI	GCNGC	5 cut(s)	119, 164, 271, 340, 514
PleI	GAGTC	3 cut(s)	104, 414, 473
PpsI	GAGTC	3 cut(s)	104, 414, 473
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	77
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	457
RseI	CAYNNNNRTG	2 cut(s)	201, 283
SatI	GCNGC	5 cut(s)	118, 163, 270, 339, 513
Sau3AI	GATC	3 cut(s)	101, 215, 457
SchI	GAGTC	3 cut(s)	104, 415, 473
ScrFI	CCNGG	2 cut(s)	167, 475
SduI	GDGCHC	1 cut(s)	172
SetI	ASST	7 cut(s)	6, 137, 180, 237, 258, 343, 437
SfaNI	GCATC	1 cut(s)	75
SmiMI	CAYNNNNRTG	2 cut(s)	201, 283
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	2 cut(s)	32, 505
SsiI	CCGC	1 cut(s)	118
SspMI	CTAG	2 cut(s)	114, 490
StyD4I	CCNGG	2 cut(s)	165, 473
StyI	CCWWGG	3 cut(s)	371, 401, 489
TaaI	ACNGT	3 cut(s)	367, 445, 531
TaqI	TCGA	1 cut(s)	525
TasI	AATT	2 cut(s)	32, 505
TauI	GCSGC	1 cut(s)	120
TscAI	CASTG	2 cut(s)	128, 290
TseI	GCWGC	4 cut(s)	162, 269, 338, 512
TspDTI	ATGAA	3 cut(s)	38, 312, 481
TspRI	CASTG	2 cut(s)	128, 290
XmaJI	CCTAGG	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	228
XspI	CTAG	2 cut(s)	114, 490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.