Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Forward (+)

33794767 .. 33795966

Gene Structure 1200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0193900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAGCAAGTCTTCTGCAGGGGAAGGTTCATCCTCAAAAGCGAAAGCTGGACCCTCACAGCCGGCAGAAACTTCATTTAAGCGCAAGCGTGGAGTCTTCCCAAAAGAATTGCAGCACATGATGTATGGTTTCGGAGATGATCCCAATCCTCTTCCAGAGAGTGTGGCTCTCATGGAGGACATAGTGGTTGAATACATTACAGATTTGGTACATAAAGCCCAAGATACTGGATCAAATAGGGGAAAGCTATCAGTGGAGGATTTTCTCTACCTAATCCGCAAGGATTCTCCAAAACTTAACCGCTGTAAAGAATTGCTGTCTATGAATGAAGAGCTAAAGCAAGCAAGGAAGGCTTTCGAGACAGATGAAGAGAACCTGCGGAAAGCTTTTGAGGCGGATGATGATAAACTGGGATCAACAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

141

Amino Acids

15.76

Weight (kDa)

5.35

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIID-18kDa	PF02269	32 - 120	3.3e-31	Transcription initiation factor IID, 18kD subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	384
AciI	CCGC	4 cut(s)	277, 301, 379, 395
AclWI	GGATC	3 cut(s)	134, 238, 421
AfaI	GTAC	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	191
AluBI	AGCT	4 cut(s)	47, 247, 334, 386
AluI	AGCT	4 cut(s)	47, 247, 334, 386
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	3 cut(s)	134, 238, 421
ApeKI	GCWGC	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	50
BbsI	GAAGAC	2 cut(s)	3, 88
BbvI	GCAGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	353
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	384
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	419
BpiI	GAAGAC	2 cut(s)	3, 88
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BsaBI	GATNNNNATC	1 cut(s)	144
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	2 cut(s)	232, 414
Bse8I	GATNNNNATC	1 cut(s)	144
BseGI	GGATG	2 cut(s)	29, 403
BseJI	GATNNNNATC	1 cut(s)	144
BseNI	ACTGG	2 cut(s)	232, 414
BseXI	GCAGC	1 cut(s)	124
BsiSI	CCGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	353
Bsp143I	GATC	3 cut(s)	139, 230, 413
BspACI	CCGC	4 cut(s)	277, 301, 379, 395
BspLI	GGNNCC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	384
BspPI	GGATC	3 cut(s)	134, 238, 421
BspQI	GCTCTTC	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	232, 414
BssAI	RCCGGY	1 cut(s)	61
BssMI	GATC	3 cut(s)	139, 230, 413
Bst6I	CTCTTC	3 cut(s)	156, 324, 363
BstC8I	GCNNGC	3 cut(s)	63, 86, 342
BstF5I	GGATG	2 cut(s)	29, 403
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	3 cut(s)	142, 233, 416
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	3 cut(s)	139, 230, 413
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 392
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	1 cut(s)	124
BstV2I	GAAGAC	2 cut(s)	3, 88
BstXI	CCANNNNNNTGG	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	29, 403
BtsIMutI	CAGTG	1 cut(s)	258
BveI	ACCTGC	1 cut(s)	384
Cac8I	GCNNGC	3 cut(s)	63, 86, 342
CfoI	GCGC	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	118, 172
CviJI	RGCY	8 cut(s)	47, 61, 167, 218, 247, 334, 353, 386
CviKI_1	RGCY	8 cut(s)	47, 61, 167, 218, 247, 334, 353, 386
CviQI	GTAC	1 cut(s)	209
DpnI	GATC	3 cut(s)	141, 232, 415
DpnII	GATC	3 cut(s)	139, 230, 413
Eam1104I	CTCTTC	3 cut(s)	156, 324, 363
EarI	CTCTTC	3 cut(s)	156, 324, 363
EciI	GGCGGA	1 cut(s)	410
Eco47I	GGWCC	1 cut(s)	50
FaeI	CATG	2 cut(s)	121, 175
FaiI	YATR	6 cut(s)	119, 126, 173, 182, 213, 323
FalI	AAGNNNNNCTT	2 cut(s)	337, 369
FatI	CATG	2 cut(s)	117, 171
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	2 cut(s)	16, 410
Fsp4HI	GCNGC	1 cut(s)	113
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	113
HapII	CCGG	1 cut(s)	62
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	2 cut(s)	121, 175
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	384
HinfI	GANTC	2 cut(s)	93, 284
HpaII	CCGG	1 cut(s)	62
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	2 cut(s)	155, 358
HpyAV	CCTTC	2 cut(s)	17, 343
HpyCH4V	TGCA	2 cut(s)	17, 112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 392
Hsp92II	CATG	2 cut(s)	121, 175
HspAI	GCGC	1 cut(s)	82
KroI	GCCGGC	1 cut(s)	61
KroNI	GCCGGC	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	139, 230, 413
LguI	GCTCTTC	1 cut(s)	324
LpnPI	CCDG	7 cut(s)	3, 33, 75, 168, 213, 389, 395
Lsp1109I	GCAGC	1 cut(s)	124
MalI	GATC	3 cut(s)	141, 232, 415
MboI	GATC	3 cut(s)	139, 230, 413
MboII	GAAGA	5 cut(s)	3, 88, 143, 341, 380
MluCI	AATT	2 cut(s)	107, 311
MlyI	GAGTC	1 cut(s)	102
MnlI	CCTC	6 cut(s)	43, 64, 159, 169, 250, 385
MroNI	GCCGGC	1 cut(s)	61
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	2 cut(s)	78, 297
MspA1I	CMGCKG	1 cut(s)	303
MspI	CCGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	2 cut(s)	350, 392
NaeI	GCCGGC	1 cut(s)	63
NdeII	GATC	3 cut(s)	139, 230, 413
NgoMIV	GCCGGC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	121, 175
NlaIV	GGNNCC	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	324
PdiI	GCCGGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	1 cut(s)	284
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	78, 297
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	3 cut(s)	139, 230, 413
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	102
SetI	ASST	7 cut(s)	28, 49, 249, 273, 336, 378, 388
SfcI	CTRYAG	1 cut(s)	15
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	2 cut(s)	107, 311
SsiI	CCGC	4 cut(s)	277, 301, 379, 395
TaqI	TCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	107, 311
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	2 cut(s)	78, 297
Tru9I	TTAA	2 cut(s)	78, 297
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	5 cut(s)	18, 63, 338, 342, 381
TspRI	CASTG	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	50
XmnI	GAANNNNTTC	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.