Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Reverse (-)

33830130 .. 33830938

Gene Structure 809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0194200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGCTACAAACCCAACAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAGGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGCGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTAATCTCAATTTTGGTTCCACCGATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGACTACTTCCGAGGAAGGTAGTGCACATGATTACTATTTCGGTGGCTCAGGCGGTTACAACCGTGGATCTCCAGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTACTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

211

Amino Acids

23.18

Weight (kDa)

5.22

Isoelectric Point (pI)

57.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	4.6e-10	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccIII	TCCGGA	1 cut(s)	620
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	7 cut(s)	118, 131, 141, 327, 340, 375, 592
AcuI	CTGAAG	1 cut(s)	536
AcyI	GRCGYC	1 cut(s)	501
AfiI	CCNNNNNNNGG	2 cut(s)	329, 491
AgsI	TTSAA	1 cut(s)	467
AhlI	ACTAGT	2 cut(s)	314, 359
AjnI	CCWGG	2 cut(s)	92, 456
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	4 cut(s)	7, 199, 604, 626
AluI	AGCT	4 cut(s)	7, 199, 604, 626
Alw21I	GWGCWC	3 cut(s)	492, 544, 606
Alw26I	GTCTC	1 cut(s)	197
Alw44I	GTGCAC	2 cut(s)	488, 540
AlwI	GGATC	7 cut(s)	118, 131, 141, 327, 340, 375, 592
Ama87I	CYCGRG	1 cut(s)	261
Aor13HI	TCCGGA	1 cut(s)	620
ApaLI	GTGCAC	2 cut(s)	488, 540
ApeKI	GCWGC	3 cut(s)	50, 199, 293
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	1 cut(s)	354
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	354
AxyI	CCTNAGG	1 cut(s)	128
BaeGI	GKGCMC	3 cut(s)	306, 492, 544
BamHI	GGATCC	2 cut(s)	123, 332
BanII	GRGCYC	2 cut(s)	262, 606
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	3 cut(s)	492, 544, 606
BbvI	GCAGC	3 cut(s)	62, 186, 280
BccI	CCATC	3 cut(s)	26, 368, 625
BceAI	ACGGC	2 cut(s)	72, 508
BciT130I	CCWGG	2 cut(s)	94, 458
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	197
BcuI	ACTAGT	2 cut(s)	314, 359
BfaI	CTAG	2 cut(s)	315, 360
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 200, 294
BlpI	GCTNAGC	1 cut(s)	605
BlsI	GCNGC	3 cut(s)	52, 201, 295
Bme1390I	CCNGG	3 cut(s)	55, 94, 458
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	354
BmiI	GGNNCC	6 cut(s)	102, 125, 245, 334, 355, 403
BmrFI	CCNGG	3 cut(s)	55, 94, 458
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	4 cut(s)	93, 179, 438, 573
Bpu10I	CCTNAGC	1 cut(s)	565
Bpu1102I	GCTNAGC	1 cut(s)	605
BpuEI	CTTGAG	2 cut(s)	282, 620
BpuMI	CCSGG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	3 cut(s)	306, 528, 580
BsaWI	WCCGGW	1 cut(s)	620
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 491
Bse1I	ACTGG	2 cut(s)	421, 590
Bse21I	CCTNAGG	1 cut(s)	128
BseAI	TCCGGA	1 cut(s)	620
BseBI	CCWGG	2 cut(s)	94, 458
BseDI	CCNNGG	3 cut(s)	306, 528, 580
BseGI	GGATG	3 cut(s)	37, 428, 617
BseLI	CCNNNNNNNGG	2 cut(s)	329, 491
BseMII	CTCAG	3 cut(s)	142, 579, 619
BseNI	ACTGG	2 cut(s)	421, 590
BseRI	GAGGAG	2 cut(s)	459, 462
BseSI	GKGCMC	3 cut(s)	306, 492, 544
BseXI	GCAGC	3 cut(s)	62, 186, 280
BsiHKAI	GWGCWC	3 cut(s)	492, 544, 606
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	54, 621
BslI	CCNNNNNNNGG	2 cut(s)	329, 491
BsmAI	GTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	5 cut(s)	262, 306, 492, 544, 606
Bsp13I	TCCGGA	1 cut(s)	620
Bsp143I	GATC	8 cut(s)	112, 123, 133, 186, 332, 380, 451, 584
Bsp1720I	GCTNAGC	1 cut(s)	605
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	1 cut(s)	570
BspCNI	CTCAG	3 cut(s)	141, 578, 618
BspEI	TCCGGA	1 cut(s)	620
BspLI	GGNNCC	6 cut(s)	102, 125, 245, 334, 355, 403
BspPI	GGATC	7 cut(s)	118, 131, 141, 327, 340, 375, 592
BsrI	ACTGG	2 cut(s)	421, 590
BssECI	CCNNGG	3 cut(s)	306, 528, 580
BssMI	GATC	8 cut(s)	112, 123, 133, 186, 332, 380, 451, 584
BssNI	GRCGYC	1 cut(s)	501
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	1 cut(s)	306
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	2 cut(s)	94, 458
Bst4CI	ACNGT	2 cut(s)	207, 581
Bst6I	CTCTTC	2 cut(s)	272, 477
BstACI	GRCGYC	1 cut(s)	501
BstDEI	CTNAG	3 cut(s)	128, 565, 605
BstDSI	CCRYGG	2 cut(s)	306, 580
BstEII	GGTNACC	1 cut(s)	509
BstF5I	GGATG	3 cut(s)	37, 428, 617
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	8 cut(s)	115, 126, 136, 189, 335, 383, 454, 587
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	8 cut(s)	112, 123, 133, 186, 332, 380, 451, 584
BstNI	CCWGG	2 cut(s)	94, 458
BstPI	GGTNACC	1 cut(s)	509
BstSCI	CCNGG	3 cut(s)	53, 92, 456
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	3 cut(s)	306, 492, 544
BstV1I	GCAGC	3 cut(s)	62, 186, 280
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	6 cut(s)	123, 133, 186, 332, 380, 584
BstYI	RGATCY	6 cut(s)	123, 133, 186, 332, 380, 584
Bsu36I	CCTNAGG	1 cut(s)	128
BtgI	CCRYGG	2 cut(s)	306, 580
BtsCI	GGATG	3 cut(s)	37, 428, 617
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	354
CviAII	CATG	2 cut(s)	307, 545
DdeI	CTNAG	3 cut(s)	128, 565, 605
DpnI	GATC	8 cut(s)	114, 125, 135, 188, 334, 382, 453, 586
DpnII	GATC	8 cut(s)	112, 123, 133, 186, 332, 380, 451, 584
Eam1104I	CTCTTC	2 cut(s)	272, 477
EarI	CTCTTC	2 cut(s)	272, 477
Ecl136II	GAGCTC	1 cut(s)	604
Eco130I	CCWWGG	1 cut(s)	306
Eco24I	GRGCYC	2 cut(s)	262, 606
Eco47I	GGWCC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	536
Eco81I	CCTNAGG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	604
EcoO65I	GGTNACC	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	92, 456
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	2 cut(s)	262, 606
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	2 cut(s)	310, 548
FaiI	YATR	3 cut(s)	210, 308, 546
FatI	CATG	2 cut(s)	306, 544
Fnu4HI	GCNGC	3 cut(s)	51, 200, 294
FokI	GGATG	3 cut(s)	44, 415, 604
FriOI	GRGCYC	2 cut(s)	262, 606
Fsp4HI	GCNGC	3 cut(s)	51, 200, 294
FspBI	CTAG	2 cut(s)	315, 360
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	3 cut(s)	51, 200, 294
GsuI	CTGGAG	4 cut(s)	93, 179, 438, 573
HapII	CCGG	2 cut(s)	54, 621
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	2 cut(s)	310, 548
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	178, 410
HpaII	CCGG	2 cut(s)	54, 621
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	3 cut(s)	357, 490, 542
Hpy188I	TCNGA	1 cut(s)	529
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 599, 621
Hpy8I	GTNNAC	3 cut(s)	357, 490, 542
HpyAV	CCTTC	1 cut(s)	527
HpyCH4III	ACNGT	2 cut(s)	207, 581
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	202, 436, 490, 542
HpyF3I	CTNAG	3 cut(s)	128, 565, 605
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	2 cut(s)	310, 548
HspAI	GCGC	1 cut(s)	283
Kpn2I	TCCGGA	1 cut(s)	620
Kzo9I	GATC	8 cut(s)	112, 123, 133, 186, 332, 380, 451, 584
LmnI	GCTCC	2 cut(s)	4, 623
Lsp1109I	GCAGC	3 cut(s)	62, 186, 280
MaeI	CTAG	2 cut(s)	315, 360
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	2 cut(s)	509, 572
MalI	GATC	8 cut(s)	114, 125, 135, 188, 334, 382, 453, 586
MboI	GATC	8 cut(s)	112, 123, 133, 186, 332, 380, 451, 584
MboII	GAAGA	3 cut(s)	289, 464, 529
MflI	RGATCY	6 cut(s)	123, 133, 186, 332, 380, 584
MhlI	GDGCHC	5 cut(s)	262, 306, 492, 544, 606
MluCI	AATT	2 cut(s)	346, 394
MroI	TCCGGA	1 cut(s)	620
MroXI	GAANNNNTTC	1 cut(s)	316
MseI	TTAA	2 cut(s)	156, 387
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	54, 621
MspR9I	CCNGG	3 cut(s)	55, 94, 458
MvaI	CCWGG	2 cut(s)	94, 458
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	8 cut(s)	112, 123, 133, 186, 332, 380, 451, 584
NlaIII	CATG	2 cut(s)	310, 548
NlaIV	GGNNCC	6 cut(s)	102, 125, 245, 334, 355, 403
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	178, 410
PkrI	GCNGC	3 cut(s)	52, 201, 295
PshBI	ATTAAT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	606
Psp6I	CCWGG	2 cut(s)	92, 456
PspEI	GGTNACC	1 cut(s)	509
PspGI	CCWGG	2 cut(s)	92, 456
PspN4I	GGNNCC	6 cut(s)	102, 125, 245, 334, 355, 403
PspPI	GGNCC	1 cut(s)	354
PsuI	RGATCY	6 cut(s)	123, 133, 186, 332, 380, 584
PvuII	CAGCTG	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	606
SaqAI	TTAA	2 cut(s)	156, 387
SatI	GCNGC	3 cut(s)	51, 200, 294
Sau3AI	GATC	8 cut(s)	112, 123, 133, 186, 332, 380, 451, 584
Sau96I	GGNCC	1 cut(s)	354
ScrFI	CCNGG	3 cut(s)	55, 94, 458
SduI	GDGCHC	5 cut(s)	262, 306, 492, 544, 606
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	354
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	261, 297, 599
SmoI	CTYRAG	3 cut(s)	261, 297, 599
SpeI	ACTAGT	2 cut(s)	314, 359
Sse9I	AATT	2 cut(s)	346, 394
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	2 cut(s)	315, 360
SstI	GAGCTC	1 cut(s)	606
StyD4I	CCNGG	3 cut(s)	53, 92, 456
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	207, 581
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	27, 262
TasI	AATT	2 cut(s)	346, 394
TfiI	GAWTC	2 cut(s)	178, 410
Tru1I	TTAA	2 cut(s)	156, 387
Tru9I	TTAA	2 cut(s)	156, 387
TseI	GCWGC	3 cut(s)	50, 199, 293
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	86
VneI	GTGCAC	2 cut(s)	488, 540
VpaK11BI	GGWCC	1 cut(s)	354
VspI	ATTAAT	1 cut(s)	387
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	316
XspI	CTAG	2 cut(s)	315, 360
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.