Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019001.1

Orthogroup ID

OG0005479

Physical Location & Seq

Genomic Coordinates Reverse (-)

3315 .. 4139

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019001.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggtatcgaacggtattcctagtggagttataggaagaaatgggatttctgatgttggcagagggacaggatataatccagttccgcagaactcttcaatgttgaattttcccttgaacaacactccagaactgccaggcaatagttacactcttggcagcacacaagggatgtccagcctcacgcctaaagggtcatttccagaagaggttaactctgaaataaaaagatctgcgggatttgttccaagttacgatatttttaatgagttacatcagcacaagtccaacgattggaatttacagaatgtaggcttgacctttgatgcctctcaccatgcaaactccatccatggtagccttgactcctcaggtttagttcatcaaggtttttcttctaaccaaaggagtgcacaaagccggaatccatctaatgttgggaaagctatgttcccaatgggggcggcaagcactgatcatgggcatgcgcaaaatagtggtcaacaccttagcaacggtcttattgttgacaatccagttcggattaaatctgaaaggcattctgatgcatctcaaaataacttctttcatgatcaatatggtcaggaggatctaatgagtgcacttctcaaacagcagcaagggggagttggaccatctgaaaatgagtttgactttgatgggtattccttggataatattcctgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Myb_DNA-binding Response_reg

Protein Analysis

236

Amino Acids

25.37

Weight (kDa)

5.56

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16857 AT3G16857 AT3G16857
fragaria_vesca	FvH4_4g19230 FvH4_4g19230
malus_domestica	MD13G1159700.v1.1 MD16G1159400.v1.1
prunus_persica	Prupe.1G126400_v2.0.a1 Prupe.1G126400_v2.0.a1
pyrus_communis	pycom13g13610 pycom16g13440
rosa_chinensis	RchiOBHm_Chr4g0424211
rosa_laevigata	RLG00000007496
rosa_multiflora	Rmu_co8430763.1_g000001 Rmu_sc0002260.1_g000035 Rmu_sc0019001.1_g000002 Rmu_sc0028069.1_g000001 Rmu_sc0028070.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366160
rosa_rugosa	Rorug04G0193900 Rorug04G0194000 Rorug04G0194100 Rorug04G0194200 Rorug04G0194300
rosa_samantha	Rh4AG251700 Rh4BG257000 Rh4CG267600 Rh4DG251400
rosa_wichuraiana	Rw4G021700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	489
AccB7I	CCANNNNNTGG	1 cut(s)	294
AciI	CCGC	3 cut(s)	86, 236, 464
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	106, 298
AfiI	CCNNNNNNNGG	2 cut(s)	294, 460
AgsI	TTSAA	3 cut(s)	99, 106, 118
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw21I	GWGCWC	2 cut(s)	415, 625
Alw44I	GTGCAC	2 cut(s)	411, 621
AlwI	GGATC	1 cut(s)	618
ApaLI	GTGCAC	2 cut(s)	411, 621
ApeKI	GCWGC	2 cut(s)	159, 637
ApoI	RAATTY	2 cut(s)	106, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	484, 516
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	653
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	653
AxyI	CCTNAGG	1 cut(s)	370
BaeGI	GKGCMC	2 cut(s)	415, 625
Bbv12I	GWGCWC	2 cut(s)	415, 625
BbvI	GCAGC	2 cut(s)	171, 649
BccI	CCATC	4 cut(s)	356, 436, 664, 674
BciT130I	CCWGG	1 cut(s)	138
BclI	TGATCA	2 cut(s)	475, 592
BfaI	CTAG	1 cut(s)	21
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	3 cut(s)	160, 465, 638
BlsI	GCNGC	3 cut(s)	161, 466, 639
Bme1390I	CCNGG	1 cut(s)	138
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	1 cut(s)	653
BmrFI	CCNGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	316, 556, 578
BplI	GAGNNNNNCTC	2 cut(s)	200, 232
BpmI	CTGGAG	1 cut(s)	111
Bpu10I	CCTNAGC	1 cut(s)	509
BsaJI	CCNNGG	2 cut(s)	352, 690
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 460
Bse1I	ACTGG	2 cut(s)	80, 536
Bse21I	CCTNAGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	352, 690
BseGI	GGATG	2 cut(s)	177, 348
BseLI	CCNNNNNNNGG	2 cut(s)	294, 460
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	2 cut(s)	80, 536
BseRI	GAGGAG	1 cut(s)	358
BseSI	GKGCMC	2 cut(s)	415, 625
BseXI	GCAGC	2 cut(s)	171, 649
BsiHKAI	GWGCWC	2 cut(s)	415, 625
BsiSI	CCGG	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	2 cut(s)	294, 460
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	415, 625
Bsp143I	GATC	4 cut(s)	230, 475, 592, 610
Bsp19I	CCATGG	1 cut(s)	352
BspACI	CCGC	3 cut(s)	86, 236, 464
BspCNI	CTCAG	1 cut(s)	383
BspHI	TCATGA	1 cut(s)	589
BspPI	GGATC	1 cut(s)	618
BsrI	ACTGG	2 cut(s)	80, 536
BssECI	CCNNGG	2 cut(s)	352, 690
BssMI	GATC	4 cut(s)	230, 475, 592, 610
BssT1I	CCWWGG	2 cut(s)	352, 690
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	14, 518
Bst6I	CTCTTC	2 cut(s)	100, 201
BstC8I	GCNNGC	2 cut(s)	469, 486
BstDEI	CTNAG	2 cut(s)	370, 509
BstDSI	CCRYGG	1 cut(s)	352
BstF5I	GGATG	2 cut(s)	177, 348
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	4 cut(s)	233, 478, 595, 613
BstMBI	GATC	4 cut(s)	230, 475, 592, 610
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	1 cut(s)	136
BstSLI	GKGCMC	2 cut(s)	415, 625
BstV1I	GCAGC	2 cut(s)	171, 649
BstX2I	RGATCY	2 cut(s)	230, 610
BstYI	RGATCY	2 cut(s)	230, 610
Bsu36I	CCTNAGG	1 cut(s)	370
BtgI	CCRYGG	1 cut(s)	352
BtsCI	GGATG	2 cut(s)	177, 348
BtsIMutI	CAGTG	1 cut(s)	471
Cac8I	GCNNGC	2 cut(s)	469, 486
CciI	TCATGA	1 cut(s)	589
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	653
CviAII	CATG	5 cut(s)	338, 353, 479, 485, 590
CviJI	RGCY	5 cut(s)	180, 315, 360, 420, 446
CviKI_1	RGCY	5 cut(s)	180, 315, 360, 420, 446
DdeI	CTNAG	2 cut(s)	370, 509
DpnI	GATC	4 cut(s)	232, 477, 594, 612
DpnII	GATC	4 cut(s)	230, 475, 592, 610
Eam1104I	CTCTTC	2 cut(s)	100, 201
EarI	CTCTTC	2 cut(s)	100, 201
Eco130I	CCWWGG	2 cut(s)	352, 690
Eco47I	GGWCC	1 cut(s)	653
Eco81I	CCTNAGG	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	2 cut(s)	352, 690
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	2 cut(s)	352, 690
FaeI	CATG	5 cut(s)	341, 356, 482, 488, 593
FaiI	YATR	9 cut(s)	32, 75, 339, 354, 449, 480, 486, 591, 600
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	5 cut(s)	337, 352, 478, 484, 589
FauI	CCCGC	1 cut(s)	229
FbaI	TGATCA	2 cut(s)	475, 592
Fnu4HI	GCNGC	3 cut(s)	160, 465, 638
FokI	GGATG	2 cut(s)	184, 335
Fsp4HI	GCNGC	3 cut(s)	160, 465, 638
FspBI	CTAG	1 cut(s)	21
FspI	TGCGCA	1 cut(s)	489
GlaI	GCGC	1 cut(s)	489
GluI	GCNGC	3 cut(s)	160, 465, 638
GsuI	CTGGAG	1 cut(s)	111
HapII	CCGG	1 cut(s)	421
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	5 cut(s)	341, 356, 482, 488, 593
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HincII	GTYRAC	3 cut(s)	214, 503, 529
HindII	GTYRAC	3 cut(s)	214, 503, 529
HinfI	GANTC	2 cut(s)	365, 424
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	5 cut(s)	214, 413, 503, 529, 623
Hpy188I	TCNGA	6 cut(s)	52, 220, 543, 553, 565, 661
Hpy188III	TCNNGA	4 cut(s)	128, 203, 590, 605
Hpy8I	GTNNAC	5 cut(s)	214, 413, 503, 529, 623
HpyCH4III	ACNGT	2 cut(s)	14, 518
HpyCH4V	TGCA	4 cut(s)	341, 413, 569, 623
HpyF3I	CTNAG	2 cut(s)	370, 509
Hsp92II	CATG	5 cut(s)	341, 356, 482, 488, 593
HspAI	GCGC	1 cut(s)	488
Ksp22I	TGATCA	2 cut(s)	475, 592
KspAI	GTTAAC	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	230, 475, 592, 610
Lsp1109I	GCAGC	2 cut(s)	171, 649
LweI	GCATC	3 cut(s)	316, 556, 578
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	146, 251, 270
MalI	GATC	4 cut(s)	232, 477, 594, 612
MboI	GATC	4 cut(s)	230, 475, 592, 610
MboII	GAAGA	4 cut(s)	48, 87, 218, 387
MflI	RGATCY	2 cut(s)	230, 610
MhlI	GDGCHC	2 cut(s)	415, 625
MluCI	AATT	2 cut(s)	106, 298
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	2 cut(s)	312, 631
MnlI	CCTC	6 cut(s)	56, 191, 202, 340, 379, 601
Mph1103I	ATGCAT	1 cut(s)	571
MseI	TTAA	3 cut(s)	213, 264, 546
MslI	CAYNNNNRTG	2 cut(s)	483, 564
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	138
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	138
NcoI	CCATGG	1 cut(s)	352
NdeII	GATC	4 cut(s)	230, 475, 592, 610
NlaIII	CATG	5 cut(s)	341, 356, 482, 488, 593
NsbI	TGCGCA	1 cut(s)	489
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	1 cut(s)	488
PaeI	GCATGC	1 cut(s)	488
PagI	TCATGA	1 cut(s)	589
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	424
PflMI	CCANNNNNTGG	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	161, 466, 639
PleI	GAGTC	1 cut(s)	359
PpsI	GAGTC	1 cut(s)	359
Psp6I	CCWGG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	653
PsuI	RGATCY	2 cut(s)	230, 610
RseI	CAYNNNNRTG	2 cut(s)	483, 564
SaqAI	TTAA	3 cut(s)	213, 264, 546
SatI	GCNGC	3 cut(s)	160, 465, 638
Sau3AI	GATC	4 cut(s)	230, 475, 592, 610
Sau96I	GGNCC	1 cut(s)	653
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	138
SduI	GDGCHC	2 cut(s)	415, 625
SetI	ASST	6 cut(s)	213, 323, 376, 391, 448, 510
SfaNI	GCATC	3 cut(s)	316, 556, 578
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	2 cut(s)	483, 564
SphI	GCATGC	1 cut(s)	488
Sse9I	AATT	2 cut(s)	106, 298
SsiI	CCGC	3 cut(s)	86, 236, 464
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	1 cut(s)	136
StyI	CCWWGG	2 cut(s)	352, 690
TaaI	ACNGT	2 cut(s)	14, 518
TaqI	TCGA	1 cut(s)	8
TasI	AATT	2 cut(s)	106, 298
TauI	GCSGC	1 cut(s)	467
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	3 cut(s)	213, 264, 546
Tru9I	TTAA	3 cut(s)	213, 264, 546
TscAI	CASTG	1 cut(s)	478
TseI	GCWGC	2 cut(s)	159, 637
TspDTI	ATGAA	2 cut(s)	371, 578
TspRI	CASTG	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	294
VneI	GTGCAC	2 cut(s)	411, 621
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	2 cut(s)	106, 298
XceI	RCATGY	1 cut(s)	488
XspI	CTAG	1 cut(s)	21
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.