Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010320

Physical Location & Seq

Genomic Coordinates Forward (+)

9807910 .. 9810211

Gene Structure 2302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g13730.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCTTTTCAAGCAAACCCGTATCAATAAGAGAACTCCAGTCTTACTCCAATGGCGGCGAAGAAGCGGGAGAAGAGCTCGCCAAAGAAGAGGAAGCAAATCCCAGGCAATAAGCCGGAGACCAACAGCTCGACTTCCAAGAAGCCCAAGCTCCTCGTCTCCAAGCCCTCAAATCCTCGAAGCACCGACTTCAAGAAACCCCCCAAACCTTTCAAGCCCCGAGAACCGGGACTCGATCGATGAGAAACAAGTTCCGCTTTCGAAGCAAGAGGGCCGCCTCCGTGCCAAGGAGCTTGCAGAGGCTAGGAAGAAGAAGCGGAAGCGTCATTACAATTTAGAGCAAGAGCTGGCACATCTGTGGGAAAAGATGCGGCAACGAAATATTTCCAAAGAAGATCGATCCAAGTTGGTGAGTGAAGCGGTAGAGAAAATGAAGGGGAAAATTCCTGAAATCGCAAGCTCCCATGTGTCTTCTCGTGTTCTGCAGACTTGCGTTAAGTACTGTTCACAAGCGGAAAAGGATGCAGTTTTTGAGGAGCTTCAGCCACATCTTCTTACTCTTGCATGCAACACGTATGCTGTTCATCTGGTGACCAAAATGTTAGACAATGCCTCCAAAATGCAGCTAGCGGCATTTATCTCATCTCTCCGAGGACATGTTGCTTCCCTTCTTCGTCACATGGTTGGTTCTGTAGTCGTTGAGCATGCATACCAATTGGGAAATGCAACTCAAAAGCATGAACTTTTGGTGGAACTATATTCTACGGAGCTTCAGTTGTTTAAGGACTTGATCGATCGAAGAATGAGGGCAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006417 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0034248 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPL zf-XS

Protein Analysis

273

Amino Acids

31.25

Weight (kDa)

10.42

Isoelectric Point (pI)

79.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16810
fragaria_vesca	FvH4_4g18900 FvH4_4g18900
malus_domestica	MD13G1162200.v1.1 MD16G1162000.v1.1
prunus_persica	Prupe.1G129500_v2.0.a1
pyrus_communis	pycom13g13840 pycom16g13730 pycom16g13740
rosa_chinensis	RchiOBHm_Chr4g0423801
rosa_laevigata	RLG00000007532
rosa_multiflora	Rmu_co8056970.1_g000001 Rmu_sc0003369.1_g000020
rosa_roxburghii	Rroxscaffold_5G00365910
rosa_rugosa	Rorug04G0190800
rosa_samantha	Rh4AG250200 Rh4BG255400 Rh4CG064700 Rh4CG263400 Rh4DG249700
rosa_wichuraiana	Rw4G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	800
AciI	CCGC	9 cut(s)	55, 66, 254, 274, 316, 370, 419, 512, 629
AclWI	GGATC	1 cut(s)	393
AcsI	RAATTY	1 cut(s)	441
AcuI	CTGAAG	2 cut(s)	524, 755
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	225, 286
AflIII	ACRYGT	2 cut(s)	570, 655
AgsI	TTSAA	3 cut(s)	10, 192, 213
AjnI	CCWGG	1 cut(s)	102
AleI	CACNNNNGTG	1 cut(s)	355
AluBI	AGCT	9 cut(s)	77, 128, 150, 292, 346, 459, 538, 625, 769
AluI	AGCT	9 cut(s)	77, 128, 150, 292, 346, 459, 538, 625, 769
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	112, 162
AlwI	GGATC	1 cut(s)	393
Ama87I	CYCGRG	1 cut(s)	218
AoxI	GGCC	1 cut(s)	271
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	1 cut(s)	441
Asp700I	GAANNNNTTC	1 cut(s)	382
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	227
AsuHPI	GGTGA	2 cut(s)	421, 601
AsuII	TTCGAA	1 cut(s)	260
AsuNHI	GCTAGC	1 cut(s)	625
AvaI	CYCGRG	1 cut(s)	218
BanII	GRGCYC	1 cut(s)	79
BarI	GAAGNNNNNNTAC	2 cut(s)	311, 343
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	634
BciT130I	CCWGG	1 cut(s)	104
BcnI	CCSGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	112, 162
BfaI	CTAG	3 cut(s)	303, 626, 817
BfmI	CTRYAG	2 cut(s)	482, 690
BfuAI	ACCTGC	1 cut(s)	800
BisI	GCNGC	5 cut(s)	56, 274, 371, 623, 630
BlsI	GCNGC	5 cut(s)	57, 275, 372, 624, 631
BmcAI	AGTACT	1 cut(s)	500
Bme1390I	CCNGG	2 cut(s)	104, 227
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	104, 227
BmsI	GCATC	2 cut(s)	357, 511
BmtI	GCTAGC	1 cut(s)	629
BpiI	GAAGAC	1 cut(s)	462
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	227
Bsa29I	ATCGAT	3 cut(s)	237, 397, 792
BsaAI	YACGTR	1 cut(s)	573
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	3 cut(s)	102, 285, 649
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 626, 758, 788
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 286
Bse1I	ACTGG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	104
BseCI	ATCGAT	3 cut(s)	237, 397, 792
BseDI	CCNNGG	3 cut(s)	102, 285, 649
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	225, 286
BseNI	ACTGG	1 cut(s)	38
BseRI	GAGGAG	2 cut(s)	142, 548
BseXI	GCAGC	1 cut(s)	634
Bsh1285I	CGRYCG	2 cut(s)	237, 796
BshFI	GGCC	1 cut(s)	273
BshVI	ATCGAT	3 cut(s)	237, 397, 792
BsiEI	CGRYCG	2 cut(s)	237, 796
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	115, 226
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	2 cut(s)	225, 286
BsmAI	GTCTC	2 cut(s)	112, 162
BsmBI	CGTCTC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	273
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	5 cut(s)	234, 394, 398, 789, 793
BspACI	CCGC	9 cut(s)	55, 66, 254, 274, 316, 370, 419, 512, 629
BspANI	GGCC	1 cut(s)	273
BspDI	ATCGAT	3 cut(s)	237, 397, 792
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	800
BspOI	GCTAGC	1 cut(s)	629
BspPI	GGATC	1 cut(s)	393
BspQI	GCTCTTC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	3 cut(s)	102, 285, 649
BssMI	GATC	5 cut(s)	234, 394, 398, 789, 793
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	503
Bst6I	CTCTTC	2 cut(s)	67, 82
BstBAI	YACGTR	1 cut(s)	573
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	7 cut(s)	79, 294, 348, 457, 565, 627, 705
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	5 cut(s)	237, 397, 401, 792, 796
BstMAI	GTCTC	2 cut(s)	112, 162
BstMBI	GATC	5 cut(s)	234, 394, 398, 789, 793
BstMCI	CGRYCG	2 cut(s)	237, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 262
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	3 cut(s)	567, 659, 707
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	102, 225
BstSFI	CTRYAG	2 cut(s)	482, 690
BstV1I	GCAGC	1 cut(s)	634
BstV2I	GAAGAC	1 cut(s)	462
Bsu15I	ATCGAT	3 cut(s)	237, 397, 792
BsuRI	GGCC	1 cut(s)	273
BsuTUI	ATCGAT	3 cut(s)	237, 397, 792
BtsCI	GGATG	1 cut(s)	526
BveI	ACCTGC	1 cut(s)	800
Cac8I	GCNNGC	7 cut(s)	79, 294, 348, 457, 565, 627, 705
Cfr13I	GGNCC	1 cut(s)	271
ClaI	ATCGAT	3 cut(s)	237, 397, 792
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	6 cut(s)	464, 564, 656, 679, 704, 737
CviQI	GTAC	1 cut(s)	499
DpnI	GATC	5 cut(s)	236, 396, 400, 791, 795
DpnII	GATC	5 cut(s)	234, 394, 398, 789, 793
Eam1104I	CTCTTC	2 cut(s)	67, 82
EarI	CTCTTC	2 cut(s)	67, 82
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	77
Eco57I	CTGAAG	2 cut(s)	524, 755
Eco88I	CYCGRG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	589
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	285
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	6 cut(s)	467, 567, 659, 682, 707, 740
FaiI	YATR	9 cut(s)	465, 565, 576, 657, 680, 705, 709, 738, 757
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	6 cut(s)	463, 563, 655, 678, 703, 736
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	5 cut(s)	56, 274, 371, 623, 630
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	5 cut(s)	56, 274, 371, 623, 630
FspBI	CTAG	3 cut(s)	303, 626, 817
GluI	GCNGC	5 cut(s)	56, 274, 371, 623, 630
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	273
HapII	CCGG	2 cut(s)	115, 226
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	6 cut(s)	467, 567, 659, 682, 707, 740
HinfI	GANTC	1 cut(s)	230
HpaII	CCGG	2 cut(s)	115, 226
HphI	GGTGA	2 cut(s)	421, 601
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	1 cut(s)	650
Hpy188III	TCNNGA	2 cut(s)	192, 446
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	427, 677
HpyCH4III	ACNGT	1 cut(s)	503
HpyCH4IV	ACGT	1 cut(s)	572
HpyCH4V	TGCA	8 cut(s)	296, 484, 524, 563, 567, 622, 707, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 262
HpySE526I	ACGT	1 cut(s)	572
Hsp92II	CATG	6 cut(s)	467, 567, 659, 682, 707, 740
Kzo9I	GATC	5 cut(s)	234, 394, 398, 789, 793
LguI	GCTCTTC	1 cut(s)	67
LmnI	GCTCC	5 cut(s)	155, 289, 464, 535, 766
LpnPI	CCDG	9 cut(s)	51, 89, 116, 128, 239, 332, 459, 572, 795
Lsp1109I	GCAGC	1 cut(s)	634
LweI	GCATC	2 cut(s)	357, 511
MaeI	CTAG	3 cut(s)	303, 626, 817
MaeII	ACGT	1 cut(s)	572
MaeIII	GTNAC	3 cut(s)	589, 674, 812
MalI	GATC	5 cut(s)	236, 396, 400, 791, 795
MboI	GATC	5 cut(s)	234, 394, 398, 789, 793
MfeI	CAATTG	1 cut(s)	713
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	3 cut(s)	331, 441, 713
MlyI	GAGTC	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	709
MroXI	GAANNNNTTC	1 cut(s)	382
MseI	TTAA	2 cut(s)	495, 780
MslI	CAYNNNNRTG	1 cut(s)	355
MspI	CCGG	2 cut(s)	115, 226
MspR9I	CCNGG	2 cut(s)	104, 227
MunI	CAATTG	1 cut(s)	713
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	2 cut(s)	10, 262
NciI	CCSGG	1 cut(s)	227
NdeII	GATC	5 cut(s)	234, 394, 398, 789, 793
NheI	GCTAGC	1 cut(s)	625
NlaIII	CATG	6 cut(s)	467, 567, 659, 682, 707, 740
NmuCI	GTSAC	2 cut(s)	589, 674
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	3 cut(s)	567, 659, 707
NspV	TTCGAA	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	355
PaeI	GCATGC	2 cut(s)	567, 707
PciI	ACATGT	1 cut(s)	655
PciSI	GCTCTTC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	382
PkrI	GCNGC	5 cut(s)	57, 275, 372, 624, 631
Ple19I	CGATCG	2 cut(s)	237, 796
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
Ppu21I	YACGTR	1 cut(s)	573
PscI	ACATGT	1 cut(s)	655
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	102
PspEI	GGTNACC	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	102
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	486
PvuI	CGATCG	2 cut(s)	237, 796
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	67
SaqAI	TTAA	2 cut(s)	495, 780
SatI	GCNGC	5 cut(s)	56, 274, 371, 623, 630
Sau3AI	GATC	5 cut(s)	234, 394, 398, 789, 793
Sau96I	GGNCC	1 cut(s)	271
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	104, 227
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	2 cut(s)	357, 511
SfcI	CTRYAG	2 cut(s)	482, 690
SfuI	TTCGAA	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	355
SphI	GCATGC	2 cut(s)	567, 707
Sse9I	AATT	3 cut(s)	331, 441, 713
SsiI	CCGC	9 cut(s)	55, 66, 254, 274, 316, 370, 419, 512, 629
SspI	AATATT	1 cut(s)	382
SspMI	CTAG	3 cut(s)	303, 626, 817
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	2 cut(s)	102, 225
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	503
TaiI	ACGT	1 cut(s)	575
TaqI	TCGA	8 cut(s)	130, 177, 233, 237, 260, 397, 792, 796
TasI	AATT	3 cut(s)	331, 441, 713
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	4 cut(s)	58, 276, 373, 632
Tru1I	TTAA	2 cut(s)	495, 780
Tru9I	TTAA	2 cut(s)	495, 780
TseFI	GTSAC	2 cut(s)	589, 674
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	2 cut(s)	589, 674
TspDTI	ATGAA	3 cut(s)	446, 572, 753
TspGWI	ACGGA	2 cut(s)	269, 779
XapI	RAATTY	1 cut(s)	441
XceI	RCATGY	3 cut(s)	567, 659, 707
XmnI	GAANNNNTTC	1 cut(s)	382
XspI	CTAG	3 cut(s)	303, 626, 817
ZrmI	AGTACT	1 cut(s)	500
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.