Rh4AG250200

pumilio homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
56217717 .. 56222199
4483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG250200.1

Sequence Viewer

Length: 1581 bp
ATGAAGGGGAAAATTCCTGAAATTGCAAGCTCCCATGTTTCTTCCCGTGTTCTGCAGACTTGTGTTAAGTACTGCACGAAAGCAGAAAGGGATGCAAAAAAGAAAAAAGCGGATGGGGATGCAAAAAAGAGAAAAGCAGAAAAGGATGCAGTATTTGAGGAGCTTAAGCCGCATTTTCTTACCCTTTCACGCAGTGCATATGGTGTTCATCTGGTGAAAAAGATGTTAGATAATGCCTCCAAACAGCAGCTTGCGGAGTTTATTTCGTCACTTCATGGACATGTTGCATCCCTTCTGCGTCACATGGTTGGATCTGTAGTCGTAGAGCATGCATACCAATTGGGAAATGCAACTCAAAAACAAGAACTTTTGGTGGAACTATATTCTACAGAACTACAGTTGTTTAAGGACTTGGTCTTGAAGAAAGAGGGAAGGTTAGTAGATATAATATCAAAGTTAGATCTGCAGAAATCTTCAGTCCTGAAGCACATGACTTCGGTGATTCAACCAATTTTAGAGAAAGGAATAGTTGACCACTCTATATTACATAGGGTGTTGATAGAGTACTTCACCATAGCTGAAGAGTTCTCTGCCACAGATGTCATTAAACAGTTGTCAGGTCCTCTTCTTGTCCGAATGATTCATACAAGGGATGGATCTAGGGTTGGAATGCTCTGTGTCAAGCATGGCAGTGCAAAGGAAAGAAAGAAGATAATCAAAGGAATGAAAGGCCACATACGTAATATAGCTAGTGATCAATGTGGAAGTATGGTGCTTGTTTCTCTTGTTTCAGTTGTTGATGATACGAAGCTTATTACAAAGGTTGTCATTAATGAGCTTCAAGAACATTTAAAGGATCTTGTTTTTGATAAGGATGGAAGGCGTCCATTGCTACAGCTACTTCATCCAAATTGTTCACGCTATTTGACTCCCTATGACCTGGCTTCTCTCAGTTTGTCTATCCCTTCTTTATCCAACAAGGTTGAGTCAGACATCCCTTTTGAAGGGATGGAAACTGAAACTAATGATCCTGATGAGAGTACCCAATTAGTTGATGGTGGAAAAAAAGATCCTTCAGTTCGAAGGCAAGAATTGTTAGTCAAGAGTGGGCTTGCTGAGAGGCTAGTTGATGTATGCATTGCAAGTGCAGGGGAGTTGCTTAGATCAAACTTTGGCAAAGAAGTCATGTATGAGGTTGCAACTGGGGGTGCTGATGGAATCCTCCACCCAACTTTGGATGACAAGTTGAATGAACTATATGAAGCTATAGCAACTCTTGTTGCAGAGCCCAAATCTGAAGAACCAAAAGAAGAACACCTCCTTGAAAATTTCCATTCTAGTCGGACCATTAGAAGACTAATCTTGGATTGCCCTGCATTCGCTTCCACTCTGTGGAATAAGGCACTGAAAGGGAAATGTGAATTGTGGGCCCAAGGTCACAGCTGTAGGGTAGTCTCTGCATTCTTAGCATCTTCAGACTCTAAGGTAAATAAGCTGGCAAAGAAGGAGTTGCAGCCACTGATAGATGCTGGTACTCTGAAAGTCCCTGAGACACGAGCAGCCATTGGAACCAAGGAATGA

Protein Analysis

526

Amino Acids

58.37

Weight (kDa)

8.62

Isoelectric Point (pI)

34.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPL PF08144 355 - 454 1.3e-08 CPL (NUC119) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1392
AciI CCGC 3 cut(s) 110, 170, 254
AclWI GGATC 5 cut(s) 319, 664, 864, 1022, 1064
AcsI RAATTY 2 cut(s) 12, 1327
AcuI CTGAAG 6 cut(s) 459, 503, 600, 1059, 1317, 1458
AcyI GRCGYC 1 cut(s) 883
AdeI CACNNNGTG 2 cut(s) 194, 1392
AfaI GTAC 4 cut(s) 71, 566, 1042, 1534
AfiI CCNNNNNNNGG 3 cut(s) 1004, 1234, 1392
AflII CTTAAG 1 cut(s) 164
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 6 cut(s) 421, 506, 842, 1004, 1249, 1325
AjnI CCWGG 1 cut(s) 939
Alw26I GTCTC 2 cut(s) 1459, 1544
AlwI GGATC 5 cut(s) 319, 664, 864, 1022, 1064
AlwNI CAGNNNCTG 1 cut(s) 1519
AoxI GGCC 2 cut(s) 730, 1428
ApaI GGGCCC 1 cut(s) 1432
ApeKI GCWGC 3 cut(s) 247, 1513, 1559
ApoI RAATTY 2 cut(s) 12, 1327
ArsI GACNNNNNNTTYG 2 cut(s) 983, 1015
AseI ATTAAT 1 cut(s) 831
AspS9I GGNCC 4 cut(s) 620, 1344, 1428, 1429
AsuHPI GGTGA 3 cut(s) 226, 511, 562
AsuII TTCGAA 1 cut(s) 1081
AvaII GGWCC 2 cut(s) 620, 1344
BaeGI GKGCMC 1 cut(s) 1432
BanII GRGCYC 2 cut(s) 1290, 1432
BauI CACGAG 1 cut(s) 1554
BbsI GAAGAC 1 cut(s) 1360
BbvI GCAGC 3 cut(s) 259, 1525, 1571
BccI CCATC 6 cut(s) 107, 647, 869, 1003, 1049, 1208
BciT130I CCWGG 1 cut(s) 941
BclI TGATCA 1 cut(s) 754
BcoDI GTCTC 2 cut(s) 1459, 1544
BfaI CTAG 4 cut(s) 660, 750, 1124, 1338
BfmI CTRYAG 8 cut(s) 53, 315, 387, 395, 464, 893, 1266, 1444
BfrI CTTAAG 1 cut(s) 164
BglII AGATCT 1 cut(s) 460
BisI GCNGC 4 cut(s) 170, 248, 1514, 1560
BlsI GCNGC 4 cut(s) 171, 249, 1515, 1561
BmcAI AGTACT 2 cut(s) 71, 566
Bme1390I CCNGG 1 cut(s) 941
Bme18I GGWCC 2 cut(s) 620, 1344
BmgT120I GGNCC 4 cut(s) 620, 1344, 1428, 1429
BmiI GGNNCC 2 cut(s) 1430, 1570
BmrFI CCNGG 1 cut(s) 941
BmrI ACTGGG 1 cut(s) 1212
BmsI GCATC 6 cut(s) 82, 109, 136, 296, 1478, 1516
BmuI ACTGGG 1 cut(s) 1212
BpiI GAAGAC 1 cut(s) 1360
Bpu14I TTCGAA 1 cut(s) 1081
BsaAI YACGTR 1 cut(s) 740
BsaHI GRCGYC 1 cut(s) 883
BsaJI CCNNGG 2 cut(s) 1432, 1572
Bsc4I CCNNNNNNNGG 3 cut(s) 1004, 1234, 1392
Bse1I ACTGG 1 cut(s) 1207
Bse3DI GCAATG 2 cut(s) 887, 1137
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 2 cut(s) 1432, 1572
BseLI CCNNNNNNNGG 3 cut(s) 1004, 1234, 1392
BseMI GCAATG 2 cut(s) 887, 1137
BseMII CTCAG 3 cut(s) 964, 1107, 1539
BseNI ACTGG 1 cut(s) 1207
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 1 cut(s) 1432
BseXI GCAGC 3 cut(s) 259, 1525, 1571
BsgI GTGCAG 2 cut(s) 58, 1167
BshFI GGCC 2 cut(s) 732, 1430
BslFI GGGAC 1 cut(s) 1529
BslI CCNNNNNNNGG 3 cut(s) 1004, 1234, 1392
BsmAI GTCTC 2 cut(s) 1459, 1544
BsmFI GGGAC 1 cut(s) 1529
BsmI GAATGC 3 cut(s) 675, 1376, 1460
BsnI GGCC 2 cut(s) 732, 1430
Bsp119I TTCGAA 1 cut(s) 1081
Bsp120I GGGCCC 1 cut(s) 1428
Bsp1286I GDGCHC 2 cut(s) 1290, 1432
Bsp143I GATC 8 cut(s) 311, 460, 656, 754, 856, 1027, 1069, 1163
BspACI CCGC 3 cut(s) 110, 170, 254
BspANI GGCC 2 cut(s) 732, 1430
BspCNI CTCAG 3 cut(s) 963, 1108, 1540
BspLI GGNNCC 2 cut(s) 1430, 1570
BspMAI CTGCAG 2 cut(s) 57, 468
BspPI GGATC 5 cut(s) 319, 664, 864, 1022, 1064
BspT104I TTCGAA 1 cut(s) 1081
BspTI CTTAAG 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 887, 1137
BsrI ACTGG 1 cut(s) 1207
BssECI CCNNGG 2 cut(s) 1432, 1572
BssMI GATC 8 cut(s) 311, 460, 656, 754, 856, 1027, 1069, 1163
BssNI GRCGYC 1 cut(s) 883
BssSI CACGAG 1 cut(s) 1554
BssT1I CCWWGG 2 cut(s) 1432, 1572
Bst2BI CACGAG 1 cut(s) 1554
Bst2UI CCWGG 1 cut(s) 941
Bst4CI ACNGT 2 cut(s) 399, 612
Bst6I CTCTTC 2 cut(s) 576, 630
BstACI GRCGYC 1 cut(s) 883
BstAFI CTTAAG 1 cut(s) 164
BstBAI YACGTR 1 cut(s) 740
BstBI TTCGAA 1 cut(s) 1081
BstC8I GCNNGC 5 cut(s) 28, 252, 330, 1113, 1497
BstDEI CTNAG 6 cut(s) 950, 1116, 1160, 1465, 1482, 1548
BstENI CCTNNNNNAGG 1 cut(s) 1002
BstKTI GATC 8 cut(s) 314, 463, 659, 757, 859, 1030, 1072, 1166
BstMAI GTCTC 2 cut(s) 1459, 1544
BstMBI GATC 8 cut(s) 311, 460, 656, 754, 856, 1027, 1069, 1163
BstMWI GCNNNNNNNGC 3 cut(s) 169, 889, 1466
BstNI CCWGG 1 cut(s) 941
BstNSI RCATGY 2 cut(s) 284, 332
BstSCI CCNGG 1 cut(s) 939
BstSFI CTRYAG 8 cut(s) 53, 315, 387, 395, 464, 893, 1266, 1444
BstSLI GKGCMC 1 cut(s) 1432
BstSNI TACGTA 1 cut(s) 740
BstV1I GCAGC 3 cut(s) 259, 1525, 1571
BstV2I GAAGAC 1 cut(s) 1360
BstX2I RGATCY 5 cut(s) 311, 460, 656, 856, 1069
BstYI RGATCY 5 cut(s) 311, 460, 656, 856, 1069
BsuRI GGCC 2 cut(s) 732, 1430
BtsI GCAGTG 2 cut(s) 199, 697
BtsIMutI CAGTG 4 cut(s) 199, 697, 1403, 1517
Cac8I GCNNGC 5 cut(s) 28, 252, 330, 1113, 1497
CaiI CAGNNNCTG 1 cut(s) 1519
Cfr13I GGNCC 4 cut(s) 620, 1344, 1428, 1429
CseI GACGC 2 cut(s) 287, 872
Csp6I GTAC 4 cut(s) 70, 565, 1041, 1533
CviAII CATG 8 cut(s) 35, 275, 281, 304, 329, 490, 686, 1186
CviQI GTAC 4 cut(s) 70, 565, 1041, 1533
DdeI CTNAG 6 cut(s) 950, 1116, 1160, 1465, 1482, 1548
DpnI GATC 8 cut(s) 313, 462, 658, 756, 858, 1029, 1071, 1165
DpnII GATC 8 cut(s) 311, 460, 656, 754, 856, 1027, 1069, 1163
DraI TTTAAA 1 cut(s) 852
DraIII CACNNNGTG 2 cut(s) 194, 1392
Eam1104I CTCTTC 2 cut(s) 576, 630
EarI CTCTTC 2 cut(s) 576, 630
Eco105I TACGTA 1 cut(s) 740
Eco130I CCWWGG 2 cut(s) 1432, 1572
Eco24I GRGCYC 2 cut(s) 1290, 1432
Eco47I GGWCC 2 cut(s) 620, 1344
Eco57I CTGAAG 6 cut(s) 459, 503, 600, 1059, 1317, 1458
EcoNI CCTNNNNNAGG 1 cut(s) 1002
EcoO109I RGGNCCY 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 939
EcoT14I CCWWGG 2 cut(s) 1432, 1572
EcoT22I ATGCAT 2 cut(s) 334, 1139
EcoT38I GRGCYC 2 cut(s) 1290, 1432
ErhI CCWWGG 2 cut(s) 1432, 1572
FaeI CATG 8 cut(s) 38, 278, 284, 307, 332, 493, 689, 1189
FaqI GGGAC 1 cut(s) 1529
FatI CATG 8 cut(s) 34, 274, 280, 303, 328, 489, 685, 1185
FauNDI CATATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 4 cut(s) 170, 248, 1514, 1560
FriOI GRGCYC 2 cut(s) 1290, 1432
Fsp4HI GCNGC 4 cut(s) 170, 248, 1514, 1560
FspBI CTAG 4 cut(s) 660, 750, 1124, 1338
GluI GCNGC 4 cut(s) 170, 248, 1514, 1560
HaeIII GGCC 2 cut(s) 732, 1430
HgaI GACGC 2 cut(s) 287, 872
Hin1I GRCGYC 1 cut(s) 883
Hin1II CATG 8 cut(s) 38, 278, 284, 307, 332, 493, 689, 1189
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 6 cut(s) 502, 640, 928, 986, 1218, 1478
HphI GGTGA 3 cut(s) 226, 511, 562
Hpy166II GTNNAC 2 cut(s) 532, 917
Hpy188I TCNGA 6 cut(s) 635, 991, 1297, 1344, 1477, 1539
Hpy188III TCNNGA 6 cut(s) 17, 418, 481, 842, 1031, 1102
Hpy8I GTNNAC 2 cut(s) 532, 917
HpyAV CCTTC 8 cut(s) 302, 426, 873, 975, 998, 1077, 1083, 1498
HpyCH4III ACNGT 2 cut(s) 399, 612
HpyCH4IV ACGT 1 cut(s) 739
HpyF10VI GCNNNNNNNGC 3 cut(s) 169, 889, 1466
HpyF3I CTNAG 6 cut(s) 950, 1116, 1160, 1465, 1482, 1548
HpySE526I ACGT 1 cut(s) 739
Hsp92I GRCGYC 1 cut(s) 883
Hsp92II CATG 8 cut(s) 38, 278, 284, 307, 332, 493, 689, 1189
Ksp22I TGATCA 1 cut(s) 754
Kzo9I GATC 8 cut(s) 311, 460, 656, 754, 856, 1027, 1069, 1163
LmnI GCTCC 2 cut(s) 35, 160
Lsp1109I GCAGC 3 cut(s) 259, 1525, 1571
LweI GCATC 6 cut(s) 82, 109, 136, 296, 1478, 1516
MaeI CTAG 4 cut(s) 660, 750, 1124, 1338
MaeII ACGT 1 cut(s) 739
MaeIII GTNAC 3 cut(s) 267, 299, 1436
MalI GATC 8 cut(s) 313, 462, 658, 756, 858, 1029, 1071, 1165
MboI GATC 8 cut(s) 311, 460, 656, 754, 856, 1027, 1069, 1163
MfeI CAATTG 1 cut(s) 338
MflI RGATCY 5 cut(s) 311, 460, 656, 856, 1069
MhlI GDGCHC 2 cut(s) 1290, 1432
MluCI AATT 9 cut(s) 12, 21, 338, 510, 910, 1046, 1091, 1327, 1421
MlyI GAGTC 3 cut(s) 922, 995, 1472
MmeI TCCRAC 4 cut(s) 289, 646, 999, 1322
MnlI CCTC 8 cut(s) 151, 247, 421, 633, 1113, 1186, 1232, 1328
Mph1103I ATGCAT 2 cut(s) 334, 1139
MseI TTAA 6 cut(s) 66, 165, 405, 606, 831, 851
MslI CAYNNNNRTG 2 cut(s) 279, 690
MspA1I CMGCKG 1 cut(s) 1443
MspCI CTTAAG 1 cut(s) 164
MspR9I CCNGG 1 cut(s) 941
MunI CAATTG 1 cut(s) 338
Mva1269I GAATGC 3 cut(s) 675, 1376, 1460
MvaI CCWGG 1 cut(s) 941
MwoI GCNNNNNNNGC 3 cut(s) 169, 889, 1466
NdeI CATATG 1 cut(s) 199
NdeII GATC 8 cut(s) 311, 460, 656, 754, 856, 1027, 1069, 1163
NlaIII CATG 8 cut(s) 38, 278, 284, 307, 332, 493, 689, 1189
NlaIV GGNNCC 2 cut(s) 1430, 1570
NmuCI GTSAC 3 cut(s) 267, 299, 1436
NsiI ATGCAT 2 cut(s) 334, 1139
NspI RCATGY 2 cut(s) 284, 332
NspV TTCGAA 1 cut(s) 1081
PaeI GCATGC 1 cut(s) 332
PciI ACATGT 1 cut(s) 280
PctI GAATGC 3 cut(s) 675, 1376, 1460
PfeI GAWTC 3 cut(s) 502, 640, 1218
PflFI GACNNNGTC 1 cut(s) 413
PflMI CCANNNNNTGG 1 cut(s) 1392
PkrI GCNGC 4 cut(s) 171, 249, 1515, 1561
PleI GAGTC 3 cut(s) 922, 994, 1472
PpsI GAGTC 3 cut(s) 922, 994, 1472
Ppu21I YACGTR 1 cut(s) 740
PpuMI RGGWCCY 1 cut(s) 620
PscI ACATGT 1 cut(s) 280
PshBI ATTAAT 1 cut(s) 831
Psp5II RGGWCCY 1 cut(s) 620
Psp6I CCWGG 1 cut(s) 939
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 2 cut(s) 1430, 1570
PspOMI GGGCCC 1 cut(s) 1428
PspPI GGNCC 4 cut(s) 620, 1344, 1428, 1429
PspPPI RGGWCCY 1 cut(s) 620
PstI CTGCAG 2 cut(s) 57, 468
PstNI CAGNNNCTG 1 cut(s) 1519
PsuI RGATCY 5 cut(s) 311, 460, 656, 856, 1069
PsyI GACNNNGTC 1 cut(s) 413
PvuII CAGCTG 1 cut(s) 1443
RsaI GTAC 4 cut(s) 71, 566, 1042, 1534
RsaNI GTAC 4 cut(s) 70, 565, 1041, 1533
RseI CAYNNNNRTG 2 cut(s) 279, 690
SaqAI TTAA 6 cut(s) 66, 165, 405, 606, 831, 851
SatI GCNGC 4 cut(s) 170, 248, 1514, 1560
Sau3AI GATC 8 cut(s) 311, 460, 656, 754, 856, 1027, 1069, 1163
Sau96I GGNCC 4 cut(s) 620, 1344, 1428, 1429
ScaI AGTACT 2 cut(s) 71, 566
SchI GAGTC 3 cut(s) 922, 995, 1472
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 2 cut(s) 1290, 1432
SfaNI GCATC 6 cut(s) 82, 109, 136, 296, 1478, 1516
SfcI CTRYAG 8 cut(s) 53, 315, 387, 395, 464, 893, 1266, 1444
SfuI TTCGAA 1 cut(s) 1081
SinI GGWCC 2 cut(s) 620, 1344
SmiMI CAYNNNNRTG 2 cut(s) 279, 690
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
SnaBI TACGTA 1 cut(s) 740
SphI GCATGC 1 cut(s) 332
Sse9I AATT 9 cut(s) 12, 21, 338, 510, 910, 1046, 1091, 1327, 1421
SsiI CCGC 3 cut(s) 110, 170, 254
SspMI CTAG 4 cut(s) 660, 750, 1124, 1338
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 2 cut(s) 1432, 1572
TaaI ACNGT 2 cut(s) 399, 612
TaiI ACGT 1 cut(s) 742
TaqI TCGA 1 cut(s) 1081
TasI AATT 9 cut(s) 12, 21, 338, 510, 910, 1046, 1091, 1327, 1421
TatI WGTACW 2 cut(s) 69, 564
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 3 cut(s) 502, 640, 1218
Tru1I TTAA 6 cut(s) 66, 165, 405, 606, 831, 851
Tru9I TTAA 6 cut(s) 66, 165, 405, 606, 831, 851
TscAI CASTG 4 cut(s) 199, 697, 1410, 1524
TseFI GTSAC 3 cut(s) 267, 299, 1436
TseI GCWGC 3 cut(s) 247, 1513, 1559
Tsp45I GTSAC 3 cut(s) 267, 299, 1436
TspDTI ATGAA 8 cut(s) 17, 197, 263, 632, 740, 893, 1266, 1275
TspRI CASTG 4 cut(s) 199, 697, 1410, 1524
Tth111I GACNNNGTC 1 cut(s) 413
Van91I CCANNNNNTGG 1 cut(s) 1392
Vha464I CTTAAG 1 cut(s) 164
VpaK11BI GGWCC 2 cut(s) 620, 1344
VspI ATTAAT 1 cut(s) 831
XagI CCTNNNNNAGG 1 cut(s) 1002
XapI RAATTY 2 cut(s) 12, 1327
XceI RCATGY 2 cut(s) 284, 332
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XspI CTAG 4 cut(s) 660, 750, 1124, 1338
ZrmI AGTACT 2 cut(s) 71, 566
Zsp2I ATGCAT 2 cut(s) 334, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.