Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010320

Physical Location & Seq

Genomic Coordinates Reverse (-)

33107694 .. 33109569

Gene Structure 1876 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0190800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGTTGGTTCCAGTTCTCAAGTGCAGGAAGTGGAGTTTAAGAATGATAAGAACAGCAACAAGGATGAAGGTGGTGAACCAAGCCTGCATCAACGTGACGAAAATGATAAGCTTAAAGATGAGTTTGATCCAGATGAAGAGGATGAGCTTGCCACATTCAAATGTACGTGACAAAGAATTGGTTCTTGGCCCTAAGTTTTCTCAGGAGCAGCTTGAGAAGGATAAAGATGATGAGAGTTTGAGGAAATGGAAGCAGCAACTTCTTGGGAGTGTTGATCTCTCTGCACTAGATGTTGGAGAGAGTAAAGAAGCAGAAGTGAGGATTTTAAGTATGACATTGATGTTCCAGGAGCGGCCTGAACTTGTGCTGCCAATTCCATTCACCAACCAACCAAAGAGCAATCTTTTCACACTCAAAGGAGGAAGCAAGTTCCAAACCAAATTCACATTCACCGTCTCAAAAAACATTGTCTCAGGCCTCAGGTCCACCGCCTCAATCTGGAAGACTGGTGTCAAAGTGCACAGCTCAAAAAGAATGCTTGGAACCTTTAATCCTCGACCAGATCCTTATTCGTATGAAACCGAAGAAGAAACTACCCCTTCAGGCATGTTTGCGAGGGGCAGTTTCTGGATGATGATGGAAAATGCCATTTGGATGCTAGTTACTACTTTGAAATCCAGAAGAACTAGGCAACACCCTCTTGAAATCTTTTTCATTTCCGCATTGTCAGAATTAATTGGCTTGGTGATGGTTTCAAATGACCATTTTAATTTATCTATCCGAGTCCGTCATATTTACCGTGAAGCAAATGGTGTTGCAAATAGGCTTGCACATCTTGCTAGTAGTGGTTCTGTTGATGATGTTTGGTTAGGGGAGACACCTGCTATTATTCAGGATGTTCTCTATGAGGATTATTGTCATTGTTCATCTGTAGCTCGGGGTTTAGGTGATATGTCCCCCCCGATGCAAAATTTTACTATTAATATAATAAATGGAACCGGGCGTGGGGCTGAGCCTCCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006417 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0034248 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPL zf-XS

Protein Analysis

341

Amino Acids

38.59

Weight (kDa)

9.53

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rho_GDI	PF02115	55 - 209	1.5e-54	RHO protein GDP dissociation inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16810
fragaria_vesca	FvH4_4g18900 FvH4_4g18900
malus_domestica	MD13G1162200.v1.1 MD16G1162000.v1.1
prunus_persica	Prupe.1G129500_v2.0.a1
pyrus_communis	pycom13g13840 pycom16g13730 pycom16g13740
rosa_chinensis	RchiOBHm_Chr4g0423801
rosa_laevigata	RLG00000007532
rosa_multiflora	Rmu_co8056970.1_g000001 Rmu_sc0003369.1_g000020
rosa_roxburghii	Rroxscaffold_5G00365910
rosa_rugosa	Rorug04G0190800
rosa_samantha	Rh4AG250200 Rh4BG255400 Rh4CG064700 Rh4CG263400 Rh4DG249700
rosa_wichuraiana	Rw4G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	889
Acc36I	ACCTGC	1 cut(s)	889
AccBSI	CCGCTC	1 cut(s)	352
AciI	CCGC	3 cut(s)	352, 489, 720
AclWI	GGATC	2 cut(s)	121, 557
AcsI	RAATTY	2 cut(s)	440, 970
AcuI	CTGAAG	1 cut(s)	585
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	498, 1005
AgsI	TTSAA	4 cut(s)	159, 673, 704, 756
AjnI	CCWGG	1 cut(s)	345
AjuI	GAANNNNNNNTTGG	4 cut(s)	168, 200, 431, 463
AloI	GAACNNNNNNTCC	2 cut(s)	535, 567
AluBI	AGCT	6 cut(s)	111, 147, 211, 525, 935, 1023
AluI	AGCT	6 cut(s)	111, 147, 211, 525, 935, 1023
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	3 cut(s)	460, 475, 869
Alw44I	GTGCAC	1 cut(s)	518
AlwI	GGATC	2 cut(s)	121, 557
AlwNI	CAGNNNCTG	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	936
AoxI	GGCC	3 cut(s)	187, 353, 475
ApaLI	GTGCAC	1 cut(s)	518
ApeKI	GCWGC	3 cut(s)	208, 253, 367
ApoI	RAATTY	2 cut(s)	440, 970
AseI	ATTAAT	2 cut(s)	734, 981
Asp700I	GAANNNNTTC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	188, 483
AsuC2I	CCSGG	1 cut(s)	1000
AsuHPI	GGTGA	5 cut(s)	85, 373, 442, 757, 959
AvaI	CYCGRG	1 cut(s)	936
AvaII	GGWCC	1 cut(s)	483
AxyI	CCTNAGG	1 cut(s)	479
BaeGI	GKGCMC	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	509
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	3 cut(s)	220, 265, 354
BccI	CCATC	2 cut(s)	631, 742
BciT130I	CCWGG	1 cut(s)	347
BcnI	CCSGG	1 cut(s)	1000
BcoDI	GTCTC	3 cut(s)	460, 475, 869
BfaI	CTAG	5 cut(s)	287, 659, 687, 840, 1024
BfmI	CTRYAG	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	889
BisI	GCNGC	4 cut(s)	209, 254, 353, 368
BlpI	GCTNAGC	1 cut(s)	1011
BlsI	GCNGC	4 cut(s)	210, 255, 354, 369
Bme1390I	CCNGG	2 cut(s)	347, 1000
Bme18I	GGWCC	1 cut(s)	483
BmeT110I	CYCGRG	1 cut(s)	936
BmgT120I	GGNCC	2 cut(s)	188, 483
BmiI	GGNNCC	3 cut(s)	9, 544, 997
BmrFI	CCNGG	2 cut(s)	347, 1000
BmsI	GCATC	3 cut(s)	96, 645, 954
BoxI	GACNNNNGTC	1 cut(s)	509
BpiI	GAAGAC	1 cut(s)	509
Bpu1102I	GCTNAGC	1 cut(s)	1011
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	1000
BsaAI	YACGTR	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	498, 1005
Bse1I	ACTGG	2 cut(s)	11, 511
Bse21I	CCTNAGG	1 cut(s)	479
BseBI	CCWGG	1 cut(s)	347
BseGI	GGATG	5 cut(s)	69, 147, 636, 660, 901
BseLI	CCNNNNNNNGG	2 cut(s)	498, 1005
BseMII	CTCAG	4 cut(s)	215, 486, 493, 1002
BseNI	ACTGG	2 cut(s)	11, 511
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	3 cut(s)	220, 265, 354
BseYI	CCCAGC	1 cut(s)	1019
BsgI	GTGCAG	2 cut(s)	43, 267
BshFI	GGCC	3 cut(s)	189, 355, 477
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	1 cut(s)	936
BsiSI	CCGG	1 cut(s)	999
BslFI	GGGAC	1 cut(s)	940
BslI	CCNNNNNNNGG	2 cut(s)	498, 1005
BsmAI	GTCTC	3 cut(s)	460, 475, 869
BsmBI	CGTCTC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	940
BsmI	GAATGC	1 cut(s)	540
BsnI	GGCC	3 cut(s)	189, 355, 477
BsoBI	CYCGRG	1 cut(s)	936
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp143I	GATC	3 cut(s)	126, 274, 562
Bsp1720I	GCTNAGC	1 cut(s)	1011
BspACI	CCGC	3 cut(s)	352, 489, 720
BspANI	GGCC	3 cut(s)	189, 355, 477
BspCNI	CTCAG	4 cut(s)	214, 485, 492, 1003
BspLI	GGNNCC	3 cut(s)	9, 544, 997
BspMI	ACCTGC	1 cut(s)	889
BspPI	GGATC	2 cut(s)	121, 557
BsrBI	CCGCTC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	11, 511
BssMI	GATC	3 cut(s)	126, 274, 562
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	2 cut(s)	454, 800
Bst6I	CTCTTC	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	3 cut(s)	85, 149, 828
BstDEI	CTNAG	5 cut(s)	192, 201, 472, 479, 1011
BstF5I	GGATG	5 cut(s)	69, 147, 636, 660, 901
BstKTI	GATC	3 cut(s)	129, 277, 565
BstMAI	GTCTC	3 cut(s)	460, 475, 869
BstMBI	GATC	3 cut(s)	126, 274, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	836
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	610
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSCI	CCNGG	2 cut(s)	345, 998
BstSFI	CTRYAG	1 cut(s)	930
BstSLI	GKGCMC	1 cut(s)	522
BstV1I	GCAGC	3 cut(s)	220, 265, 354
BstV2I	GAAGAC	1 cut(s)	509
BstX2I	RGATCY	1 cut(s)	562
BstYI	RGATCY	1 cut(s)	562
Bsu36I	CCTNAGG	1 cut(s)	479
BsuRI	GGCC	3 cut(s)	189, 355, 477
BtsCI	GGATG	5 cut(s)	69, 147, 636, 660, 901
BveI	ACCTGC	1 cut(s)	889
Cac8I	GCNNGC	3 cut(s)	85, 149, 828
CaiI	CAGNNNCTG	1 cut(s)	627
Cfr13I	GGNCC	2 cut(s)	188, 483
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	1 cut(s)	607
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	5 cut(s)	192, 201, 472, 479, 1011
DpnI	GATC	3 cut(s)	128, 276, 564
DpnII	GATC	3 cut(s)	126, 274, 562
Eam1104I	CTCTTC	1 cut(s)	131
EarI	CTCTTC	1 cut(s)	131
Eco147I	AGGCCT	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	585
Eco81I	CCTNAGG	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	936
EcoRII	CCWGG	1 cut(s)	345
Esp3I	CGTCTC	1 cut(s)	460
FaeI	CATG	1 cut(s)	610
FaiI	YATR	7 cut(s)	332, 576, 608, 792, 906, 953, 986
FaqI	GGGAC	1 cut(s)	940
FatI	CATG	1 cut(s)	606
Fnu4HI	GCNGC	4 cut(s)	209, 254, 353, 368
FokI	GGATG	5 cut(s)	76, 154, 643, 667, 908
Fsp4HI	GCNGC	4 cut(s)	209, 254, 353, 368
FspBI	CTAG	5 cut(s)	287, 659, 687, 840, 1024
GluI	GCNGC	4 cut(s)	209, 254, 353, 368
GsaI	CCCAGC	1 cut(s)	1023
HaeIII	GGCC	3 cut(s)	189, 355, 477
HapII	CCGG	1 cut(s)	999
Hin1II	CATG	1 cut(s)	610
HindIII	AAGCTT	1 cut(s)	109
HinfI	GANTC	1 cut(s)	783
HpaII	CCGG	1 cut(s)	999
HphI	GGTGA	5 cut(s)	85, 373, 442, 757, 959
Hpy166II	GTNNAC	3 cut(s)	76, 486, 520
Hpy188I	TCNGA	2 cut(s)	730, 782
Hpy188III	TCNNGA	7 cut(s)	130, 203, 499, 628, 678, 701, 893
Hpy8I	GTNNAC	3 cut(s)	76, 486, 520
HpyAV	CCTTC	3 cut(s)	61, 211, 609
HpyCH4III	ACNGT	2 cut(s)	454, 800
HpyCH4IV	ACGT	2 cut(s)	93, 166
HpyCH4V	TGCA	7 cut(s)	24, 87, 284, 520, 818, 830, 967
HpyF10VI	GCNNNNNNNGC	1 cut(s)	836
HpyF3I	CTNAG	5 cut(s)	192, 201, 472, 479, 1011
HpySE526I	ACGT	2 cut(s)	93, 166
Hsp92II	CATG	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	126, 274, 562
LmnI	GCTCC	2 cut(s)	205, 349
Lsp1109I	GCAGC	3 cut(s)	220, 265, 354
LweI	GCATC	3 cut(s)	96, 645, 954
MaeI	CTAG	5 cut(s)	287, 659, 687, 840, 1024
MaeII	ACGT	2 cut(s)	93, 166
MaeIII	GTNAC	3 cut(s)	94, 167, 661
MalI	GATC	3 cut(s)	128, 276, 564
MbiI	CCGCTC	1 cut(s)	352
MboI	GATC	3 cut(s)	126, 274, 562
MboII	GAAGA	5 cut(s)	148, 514, 596, 599, 693
MflI	RGATCY	1 cut(s)	562
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	7 cut(s)	176, 372, 440, 731, 735, 769, 970
MlyI	GAGTC	1 cut(s)	792
MmeI	TCCRAC	1 cut(s)	274
MroXI	GAANNNNTTC	1 cut(s)	180
MseI	TTAA	7 cut(s)	38, 113, 326, 549, 734, 768, 981
MslI	CAYNNNNRTG	3 cut(s)	92, 159, 653
MspI	CCGG	1 cut(s)	999
MspR9I	CCNGG	2 cut(s)	347, 1000
Mva1269I	GAATGC	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	836
NciI	CCSGG	1 cut(s)	1000
NdeII	GATC	3 cut(s)	126, 274, 562
NlaIII	CATG	1 cut(s)	610
NlaIV	GGNNCC	3 cut(s)	9, 544, 997
NmuCI	GTSAC	2 cut(s)	94, 167
NspI	RCATGY	1 cut(s)	610
PaqCI	CACCTGC	1 cut(s)	889
PceI	AGGCCT	1 cut(s)	477
PctI	GAATGC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	345
PkrI	GCNGC	4 cut(s)	210, 255, 354, 369
PleI	GAGTC	1 cut(s)	791
PpsI	GAGTC	1 cut(s)	791
Ppu21I	YACGTR	1 cut(s)	167
PshAI	GACNNNNGTC	1 cut(s)	509
PshBI	ATTAAT	2 cut(s)	734, 981
Psp6I	CCWGG	1 cut(s)	345
PspFI	CCCAGC	1 cut(s)	1019
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	9, 544, 997
PspPI	GGNCC	2 cut(s)	188, 483
PstNI	CAGNNNCTG	1 cut(s)	627
PsuI	RGATCY	1 cut(s)	562
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
RseI	CAYNNNNRTG	3 cut(s)	92, 159, 653
SaqAI	TTAA	7 cut(s)	38, 113, 326, 549, 734, 768, 981
SatI	GCNGC	4 cut(s)	209, 254, 353, 368
Sau3AI	GATC	3 cut(s)	126, 274, 562
Sau96I	GGNCC	2 cut(s)	188, 483
SchI	GAGTC	1 cut(s)	792
ScrFI	CCNGG	2 cut(s)	347, 1000
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	3 cut(s)	96, 645, 954
SfcI	CTRYAG	1 cut(s)	930
SinI	GGWCC	1 cut(s)	483
SmiMI	CAYNNNNRTG	3 cut(s)	92, 159, 653
SmlI	CTYRAG	2 cut(s)	17, 212
SmoI	CTYRAG	2 cut(s)	17, 212
Sse9I	AATT	7 cut(s)	176, 372, 440, 731, 735, 769, 970
SseBI	AGGCCT	1 cut(s)	477
SsiI	CCGC	3 cut(s)	352, 489, 720
SspMI	CTAG	5 cut(s)	287, 659, 687, 840, 1024
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	345, 998
TaaI	ACNGT	2 cut(s)	454, 800
TaiI	ACGT	2 cut(s)	96, 169
TaqI	TCGA	1 cut(s)	556
TasI	AATT	7 cut(s)	176, 372, 440, 731, 735, 769, 970
TauI	GCSGC	1 cut(s)	355
Tru1I	TTAA	7 cut(s)	38, 113, 326, 549, 734, 768, 981
Tru9I	TTAA	7 cut(s)	38, 113, 326, 549, 734, 768, 981
TseFI	GTSAC	2 cut(s)	94, 167
TseI	GCWGC	3 cut(s)	208, 253, 367
Tsp45I	GTSAC	2 cut(s)	94, 167
TspDTI	ATGAA	5 cut(s)	80, 149, 591, 703, 915
TspGWI	ACGGA	1 cut(s)	776
VneI	GTGCAC	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	483
VspI	ATTAAT	2 cut(s)	734, 981
XapI	RAATTY	2 cut(s)	440, 970
XceI	RCATGY	1 cut(s)	610
XmnI	GAANNNNTTC	1 cut(s)	180
XspI	CTAG	5 cut(s)	287, 659, 687, 840, 1024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.