Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8056970.1

Orthogroup ID

OG0010320

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 542

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8056970.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

aagagaaaagcagaaaaggatgcagtatttgaggagcttaagccgcattttcttaccctttcacgcagtgcatatggtgttcatctggtgaaaaagatgttagataatgcctccaaacagcagcttgcggagtttatttcgtcacttcatggacatgttgcatcccttctgcgtcacatggttggatctgtagtcgtagagcatgcataccaattgggaaatgcaactcaaaaacaagaacttttggtggaactatattctacagaactacagttgtttaaggacttggtcttgaagaaagagggaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006417 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0034248 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPL zf-XS

Protein Analysis

103

Amino Acids

11.7

Weight (kDa)

9.23

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16810
fragaria_vesca	FvH4_4g18900 FvH4_4g18900
malus_domestica	MD13G1162200.v1.1 MD16G1162000.v1.1
prunus_persica	Prupe.1G129500_v2.0.a1
pyrus_communis	pycom13g13840 pycom16g13730 pycom16g13740
rosa_chinensis	RchiOBHm_Chr4g0423801
rosa_laevigata	RLG00000007532
rosa_multiflora	Rmu_co8056970.1_g000001 Rmu_sc0003369.1_g000020
rosa_roxburghii	Rroxscaffold_5G00365910
rosa_rugosa	Rorug04G0190800
rosa_samantha	Rh4AG250200 Rh4BG255400 Rh4CG064700 Rh4CG263400 Rh4DG249700
rosa_wichuraiana	Rw4G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	44, 128
AclWI	GGATC	1 cut(s)	193
AdeI	CACNNNGTG	1 cut(s)	68
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	2 cut(s)	37, 124
AluI	AGCT	2 cut(s)	37, 124
AlwI	GGATC	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	133
BfmI	CTRYAG	3 cut(s)	189, 261, 269
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	2 cut(s)	44, 122
BlsI	GCNGC	2 cut(s)	45, 123
BmsI	GCATC	2 cut(s)	10, 170
BseGI	GGATG	2 cut(s)	25, 161
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	185
BspACI	CCGC	2 cut(s)	44, 128
BspPI	GGATC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	38
BssMI	GATC	1 cut(s)	185
Bst4CI	ACNGT	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	38
BstC8I	GCNNGC	2 cut(s)	126, 204
BstF5I	GGATG	2 cut(s)	25, 161
BstKTI	GATC	1 cut(s)	188
BstMBI	GATC	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstNSI	RCATGY	2 cut(s)	158, 206
BstSFI	CTRYAG	3 cut(s)	189, 261, 269
BstV1I	GCAGC	1 cut(s)	133
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	25, 161
BtsI	GCAGTG	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	2 cut(s)	126, 204
CseI	GACGC	1 cut(s)	161
CviAII	CATG	4 cut(s)	149, 155, 178, 203
CviJI	RGCY	3 cut(s)	37, 43, 124
CviKI_1	RGCY	3 cut(s)	37, 43, 124
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
DraIII	CACNNNGTG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	208
FaeI	CATG	4 cut(s)	152, 158, 181, 206
FaiI	YATR	8 cut(s)	73, 75, 150, 156, 179, 204, 208, 256
FatI	CATG	4 cut(s)	148, 154, 177, 202
FauNDI	CATATG	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	44, 122
FokI	GGATG	2 cut(s)	32, 148
Fsp4HI	GCNGC	2 cut(s)	44, 122
GluI	GCNGC	2 cut(s)	44, 122
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	4 cut(s)	152, 158, 181, 206
HphI	GGTGA	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	176, 300
HpyCH4III	ACNGT	1 cut(s)	273
HpyCH4V	TGCA	5 cut(s)	23, 71, 161, 206, 224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
Hsp92II	CATG	4 cut(s)	152, 158, 181, 206
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	1 cut(s)	71
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	2 cut(s)	10, 170
MaeIII	GTNAC	2 cut(s)	141, 173
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	1 cut(s)	307
MfeI	CAATTG	1 cut(s)	212
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	1 cut(s)	212
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	3 cut(s)	25, 121, 295
Mph1103I	ATGCAT	1 cut(s)	208
MseI	TTAA	2 cut(s)	39, 279
MslI	CAYNNNNRTG	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	38
MunI	CAATTG	1 cut(s)	212
MwoI	GCNNNNNNNGC	1 cut(s)	43
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	4 cut(s)	152, 158, 181, 206
NmuCI	GTSAC	2 cut(s)	141, 173
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	2 cut(s)	158, 206
PaeI	GCATGC	1 cut(s)	206
PciI	ACATGT	1 cut(s)	154
PflFI	GACNNNGTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	45, 123
PscI	ACATGT	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	39, 279
SatI	GCNGC	2 cut(s)	44, 122
Sau3AI	GATC	1 cut(s)	185
SetI	ASST	3 cut(s)	39, 126, 311
SfaNI	GCATC	2 cut(s)	10, 170
SfcI	CTRYAG	3 cut(s)	189, 261, 269
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	2 cut(s)	44, 128
TaaI	ACNGT	1 cut(s)	273
TasI	AATT	1 cut(s)	212
TauI	GCSGC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	39, 279
Tru9I	TTAA	2 cut(s)	39, 279
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	141, 173
TseI	GCWGC	1 cut(s)	121
Tsp45I	GTSAC	2 cut(s)	141, 173
TspDTI	ATGAA	2 cut(s)	71, 137
TspRI	CASTG	1 cut(s)	73
Tth111I	GACNNNGTC	1 cut(s)	287
Vha464I	CTTAAG	1 cut(s)	38
XceI	RCATGY	2 cut(s)	158, 206
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.