Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010320

Physical Location & Seq

Genomic Coordinates Reverse (-)

12254635 .. 12273470

Gene Structure 18836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG064700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGGCCGCTGTGAGATAGTGAGTAACGACAGCGGTGGTCATAACAGAGATGAACAACTCAAGCTCTACTGCACTCCAATGGCAGCCATGGACCAAGACACCAAACTAAAGAAGAGGAAACAAGTTTCAGGCGGTATTAAGCCGGAGACCTACCATAGCTCCACTTCCAAGAGACCCAACATACCAAAGCAACTGATCGAAACAAAAGAAGAGGACAAGAACATAACTGCTGAAGTGATGAAGTCCTTAAATATTCCAAAGGGAGCTACACCCACAGTCTCACACAGCCGCATTCATTTGTGTACTTTCCTTCAGGCTTCTGAAACTCTTATTCTCTCTAAACCTCCGAATGAAAGGTCAACCTCTCGATCTCCCTATCTCTCTCCGAGTCTTCGACGTCTCCCTTGGTCAGCCATCTCCGACTGGAGACCGGTATGTGTGAAGAAATTACTTTTCATGGGTATAAAACTTGAGTATAGATACTGGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006417 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0034248 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPL zf-XS

Protein Analysis

163

Amino Acids

18.57

Weight (kDa)

9.67

Isoelectric Point (pI)

63.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16810
fragaria_vesca	FvH4_4g18900 FvH4_4g18900
malus_domestica	MD13G1162200.v1.1 MD16G1162000.v1.1
prunus_persica	Prupe.1G129500_v2.0.a1
pyrus_communis	pycom13g13840 pycom16g13730 pycom16g13740
rosa_chinensis	RchiOBHm_Chr4g0423801
rosa_laevigata	RLG00000007532
rosa_multiflora	Rmu_co8056970.1_g000001 Rmu_sc0003369.1_g000020
rosa_roxburghii	Rroxscaffold_5G00365910
rosa_rugosa	Rorug04G0190800
rosa_samantha	Rh4AG250200 Rh4BG255400 Rh4CG064700 Rh4CG263400 Rh4DG249700
rosa_wichuraiana	Rw4G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	400
AciI	CCGC	4 cut(s)	7, 33, 132, 289
AcuI	CTGAAG	2 cut(s)	252, 296
AcyI	GRCGYC	1 cut(s)	397
AfaI	GTAC	1 cut(s)	304
AgeI	ACCGGT	1 cut(s)	430
AluBI	AGCT	3 cut(s)	64, 159, 266
AluI	AGCT	3 cut(s)	64, 159, 266
Alw26I	GTCTC	5 cut(s)	140, 166, 283, 404, 421
AoxI	GGCC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	83
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AsiGI	ACCGGT	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	4, 91
AvaII	GGWCC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	383
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	422
BcoDI	GTCTC	5 cut(s)	140, 166, 283, 404, 421
BisI	GCNGC	3 cut(s)	7, 84, 289
BlsI	GCNGC	3 cut(s)	8, 85, 290
Bme18I	GGWCC	1 cut(s)	91
BmgT120I	GGNCC	2 cut(s)	4, 91
BpiI	GAAGAC	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	445
BpuEI	CTTGAG	2 cut(s)	44, 491
BsaHI	GRCGYC	1 cut(s)	397
BsaI	GGTCTC	3 cut(s)	140, 166, 421
BsaJI	CCNNGG	2 cut(s)	87, 404
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bse118I	RCCGGY	1 cut(s)	430
Bse1I	ACTGG	2 cut(s)	428, 488
BseDI	CCNNGG	2 cut(s)	87, 404
BseNI	ACTGG	2 cut(s)	428, 488
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	1 cut(s)	6
BshTI	ACCGGT	1 cut(s)	430
BsiSI	CCGG	2 cut(s)	143, 431
BsmAI	GTCTC	5 cut(s)	140, 166, 283, 404, 421
BsmBI	CGTCTC	1 cut(s)	404
BsmI	GAATGC	1 cut(s)	291
BsnI	GGCC	1 cut(s)	6
Bso31I	GGTCTC	3 cut(s)	140, 166, 421
Bsp143I	GATC	2 cut(s)	195, 368
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	4 cut(s)	7, 33, 132, 289
BspANI	GGCC	1 cut(s)	6
BspTNI	GGTCTC	3 cut(s)	140, 166, 421
BsrFI	RCCGGY	1 cut(s)	430
BsrI	ACTGG	2 cut(s)	428, 488
BssAI	RCCGGY	1 cut(s)	430
BssECI	CCNNGG	2 cut(s)	87, 404
BssMI	GATC	2 cut(s)	195, 368
BssNI	GRCGYC	1 cut(s)	397
BssT1I	CCWWGG	2 cut(s)	87, 404
Bst4CI	ACNGT	1 cut(s)	277
Bst6I	CTCTTC	2 cut(s)	107, 204
BstACI	GRCGYC	1 cut(s)	397
BstDSI	CCRYGG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	198, 371
BstMAI	GTCTC	5 cut(s)	140, 166, 283, 404, 421
BstMBI	GATC	2 cut(s)	195, 368
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	383
BsuRI	GGCC	1 cut(s)	6
BtgI	CCRYGG	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	430
Cfr13I	GGNCC	2 cut(s)	4, 91
Csp6I	GTAC	1 cut(s)	303
CspAI	ACCGGT	1 cut(s)	430
CviAII	CATG	2 cut(s)	88, 457
CviJI	RGCY	9 cut(s)	6, 64, 86, 142, 159, 266, 288, 317, 413
CviKI_1	RGCY	9 cut(s)	6, 64, 86, 142, 159, 266, 288, 317, 413
CviQI	GTAC	1 cut(s)	303
DpnI	GATC	2 cut(s)	197, 370
DpnII	GATC	2 cut(s)	195, 368
Eam1104I	CTCTTC	2 cut(s)	107, 204
EarI	CTCTTC	2 cut(s)	107, 204
Eco130I	CCWWGG	2 cut(s)	87, 404
Eco31I	GGTCTC	3 cut(s)	140, 166, 421
Eco47I	GGWCC	1 cut(s)	91
Eco57I	CTGAAG	2 cut(s)	252, 296
EcoT14I	CCWWGG	2 cut(s)	87, 404
ErhI	CCWWGG	2 cut(s)	87, 404
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	2 cut(s)	91, 460
FaiI	YATR	9 cut(s)	42, 89, 156, 182, 224, 436, 458, 464, 477
FatI	CATG	2 cut(s)	87, 456
Fnu4HI	GCNGC	3 cut(s)	7, 84, 289
Fsp4HI	GCNGC	3 cut(s)	7, 84, 289
GluI	GCNGC	3 cut(s)	7, 84, 289
GsuI	CTGGAG	1 cut(s)	445
HaeIII	GGCC	1 cut(s)	6
HapII	CCGG	2 cut(s)	143, 431
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	2 cut(s)	91, 460
HincII	GTYRAC	1 cut(s)	360
HindII	GTYRAC	1 cut(s)	360
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	143, 431
Hpy166II	GTNNAC	2 cut(s)	303, 360
Hpy188I	TCNGA	4 cut(s)	322, 348, 387, 421
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	2 cut(s)	303, 360
Hpy99I	CGWCG	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	2 cut(s)	91, 460
Kzo9I	GATC	2 cut(s)	195, 368
LmnI	GCTCC	2 cut(s)	164, 263
LpnPI	CCDG	6 cut(s)	114, 156, 299, 409, 444, 469
Lsp1109I	GCAGC	1 cut(s)	95
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	197, 370
MboI	GATC	2 cut(s)	195, 368
MboII	GAAGA	4 cut(s)	124, 221, 383, 454
MluCI	AATT	1 cut(s)	446
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	444
MnlI	CCTC	4 cut(s)	108, 205, 354, 373
MseI	TTAA	3 cut(s)	138, 248, 490
MslI	CAYNNNNRTG	1 cut(s)	77
MspA1I	CMGCKG	2 cut(s)	9, 33
MspI	CCGG	2 cut(s)	143, 431
Mva1269I	GAATGC	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	2 cut(s)	195, 368
NlaIII	CATG	2 cut(s)	91, 460
PctI	GAATGC	1 cut(s)	291
PinAI	ACCGGT	1 cut(s)	430
PkrI	GCNGC	3 cut(s)	8, 85, 290
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	4, 91
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	138, 248, 490
SatI	GCNGC	3 cut(s)	7, 84, 289
Sau3AI	GATC	2 cut(s)	195, 368
Sau96I	GGNCC	2 cut(s)	4, 91
SchI	GAGTC	1 cut(s)	397
SetI	ASST	8 cut(s)	66, 152, 161, 268, 346, 359, 365, 400
SinI	GGWCC	1 cut(s)	91
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	59, 470
SmoI	CTYRAG	2 cut(s)	59, 470
Sse9I	AATT	1 cut(s)	446
SsiI	CCGC	4 cut(s)	7, 33, 132, 289
SspI	AATATT	1 cut(s)	253
StyI	CCWWGG	2 cut(s)	87, 404
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	3 cut(s)	198, 367, 394
TasI	AATT	1 cut(s)	446
TatI	WGTACW	1 cut(s)	302
TauI	GCSGC	2 cut(s)	9, 291
Tru1I	TTAA	3 cut(s)	138, 248, 490
Tru9I	TTAA	3 cut(s)	138, 248, 490
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	5 cut(s)	66, 254, 284, 366, 445
VpaK11BI	GGWCC	1 cut(s)	91
ZraI	GACGTC	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.