Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010320

Physical Location & Seq

Genomic Coordinates Forward (+)

9810259 .. 9812853

Gene Structure 2595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGACCTCAGTGATTCAACCAATTTTAGAGAAAGGAATAATTGATCACTCTATAGTACACAGGGTGTTGATAGAGTACTTCACAATAGCTGAACAGTTCTCTGCCACAGATGTAATTAAACAGTTGTCGGGCCCACTTCTTGTTCGGGTGATCCACACAAAGGATCGATCTAAGGTTGGGATGCTCTGTGTCAAGCATGGCAGTTCAAAGGAAAGAAAGAAGATAATCAAAGGAATGAAAGGCCACGTTCATAAAATAGCTCTTGATCAAGGTGGAAGTATGGTGCTTGTTTGCCTCGTTTCAACTGTTGATGATACGAAGCTTACTACAAAGGTTGTCATTCATGAGCTTCAAGAAAATCTAAAGGATCTTGTTCTTGATAAGAACGGAAGGCGCCCATTACTGCAGTTACTTCATCCAAATTGTTCACGGTATTTGACTCCCGATGACCTGGCTTCCCTCAGTTTGTCTATCCCTTCTCTTTCCAACAAGGTTGAACATGACAATTCCGAGACAAAATCTTCAAAGGTTAACAACTCTGGTGAAGAGGGCAGTAGTGATTTGGAATTAGATGAAGCGGATACGAATGCTGAGGATGGCCTCCACTCGGTTGAAGGGGGAAAAAAGGATCCTGCCATTCGAAGGCAGGAGTTGTTAGTCCAGAGTGGGCTGGCTGAGAAGCTAGTTGATGTATGCATTACAAGTGCCGGGGAATTGCTTAGATCAAATTTTGGCAAAGAAGTCATATATGAGGTTGCAACTGGGGGTGCCGGTGGAATTCTCCACCCAACTTTGGATGACAAGTTGAGTGAGTTATATGAAACTATAGCATCTCTTGTAGCAGAACCGAAATCCCAAGAATCCAAAGAGGACTCAAAAGAGGAACACATCCTTGAAAATTTCCATTCCAGTCGGACCATAAGAAAATTAATCCTGGACTGCCCCACATTTGCTTCCACTTTGTGGAACAAAGCACTCAAAGGAAAGTGTGAGTTGTGGGCCCAAGGTCACAGCGGAAAGGTAATTGCTGCATTCTTAGAATCATCAGACTCTAAGGTAAATCAACTGGCAAAGAAAGAGTTGAAGAAGTTGATAGACGGTGGCATTCTCAAAATGCCCGATCCAAAAGTAGCCACCGGAAAGAAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006417 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0010608 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0034248 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CPL zf-XS

Protein Analysis

384

Amino Acids

41.97

Weight (kDa)

6.55

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPL	PF08144	206 - 311	1.4e-10	CPL (NUC119) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G16810
fragaria_vesca	FvH4_4g18900 FvH4_4g18900
malus_domestica	MD13G1162200.v1.1 MD16G1162000.v1.1
prunus_persica	Prupe.1G129500_v2.0.a1
pyrus_communis	pycom13g13840 pycom16g13730 pycom16g13740
rosa_chinensis	RchiOBHm_Chr4g0423801
rosa_laevigata	RLG00000007532
rosa_multiflora	Rmu_co8056970.1_g000001 Rmu_sc0003369.1_g000020
rosa_roxburghii	Rroxscaffold_5G00365910
rosa_rugosa	Rorug04G0190800
rosa_samantha	Rh4AG250200 Rh4BG255400 Rh4CG064700 Rh4CG263400 Rh4DG249700
rosa_wichuraiana	Rw4G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	393, 767
AccB7I	CCANNNNNTGG	1 cut(s)	963
AciI	CCGC	2 cut(s)	578, 1014
AclWI	GGATC	6 cut(s)	145, 171, 375, 623, 636, 1115
AcsI	RAATTY	3 cut(s)	727, 777, 898
AcyI	GRCGYC	1 cut(s)	394
AdeI	CACNNNGTG	2 cut(s)	64, 963
AfaI	GTAC	2 cut(s)	57, 77
AfiI	CCNNNNNNNGG	5 cut(s)	160, 607, 642, 793, 963
AgsI	TTSAA	9 cut(s)	17, 207, 303, 353, 497, 525, 614, 896, 1084
AjnI	CCWGG	2 cut(s)	450, 933
AluBI	AGCT	5 cut(s)	89, 260, 322, 349, 682
AluI	AGCT	5 cut(s)	89, 260, 322, 349, 682
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	6 cut(s)	145, 171, 375, 623, 636, 1115
AoxI	GGCC	4 cut(s)	130, 241, 598, 999
ApaI	GGGCCC	2 cut(s)	134, 1003
ApeKI	GCWGC	1 cut(s)	1028
ApoI	RAATTY	3 cut(s)	727, 777, 898
AseI	ATTAAT	1 cut(s)	929
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	5 cut(s)	130, 131, 915, 999, 1000
AsuC2I	CCSGG	1 cut(s)	709
AsuHPI	GGTGA	2 cut(s)	160, 554
AsuII	TTCGAA	1 cut(s)	640
AvaII	GGWCC	1 cut(s)	915
BaeGI	GKGCMC	2 cut(s)	134, 1003
BamHI	GGATCC	1 cut(s)	628
BanI	GGYRCC	2 cut(s)	393, 767
BanII	GRGCYC	2 cut(s)	134, 1003
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	1015
BccI	CCATC	1 cut(s)	590
BciT130I	CCWGG	2 cut(s)	452, 935
BciVI	GTATCC	1 cut(s)	574
BclI	TGATCA	2 cut(s)	43, 265
BcnI	CCSGG	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	683
BfmI	CTRYAG	3 cut(s)	51, 404, 825
BfoI	RGCGCY	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	574
BisI	GCNGC	1 cut(s)	1029
BlsI	GCNGC	1 cut(s)	1030
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	3 cut(s)	452, 709, 935
Bme18I	GGWCC	1 cut(s)	915
BmgT120I	GGNCC	5 cut(s)	130, 131, 915, 999, 1000
BmiI	GGNNCC	5 cut(s)	132, 395, 630, 769, 1001
BmrFI	CCNGG	3 cut(s)	452, 709, 935
BmrI	ACTGGG	1 cut(s)	771
BmsI	GCATC	2 cut(s)	171, 839
BmuI	ACTGGG	1 cut(s)	771
Bpu10I	CCTNAGC	1 cut(s)	591
Bpu14I	TTCGAA	1 cut(s)	640
BpuMI	CCSGG	1 cut(s)	709
Bsa29I	ATCGAT	1 cut(s)	166
BsaHI	GRCGYC	1 cut(s)	394
BsaJI	CCNNGG	2 cut(s)	708, 1003
BsaWI	WCCGGW	1 cut(s)	1136
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 607, 642, 793, 963
Bse118I	RCCGGY	1 cut(s)	770
Bse1I	ACTGG	3 cut(s)	766, 909, 1071
BseBI	CCWGG	2 cut(s)	452, 935
BseCI	ATCGAT	1 cut(s)	166
BseDI	CCNNGG	2 cut(s)	708, 1003
BseGI	GGATG	5 cut(s)	186, 415, 601, 802, 888
BseLI	CCNNNNNNNGG	5 cut(s)	160, 607, 642, 793, 963
BseMII	CTCAG	4 cut(s)	21, 475, 582, 666
BseNI	ACTGG	3 cut(s)	766, 909, 1071
BseSI	GKGCMC	2 cut(s)	134, 1003
BseXI	GCAGC	1 cut(s)	1015
BshFI	GGCC	4 cut(s)	132, 243, 600, 1001
BshNI	GGYRCC	2 cut(s)	393, 767
BshVI	ATCGAT	1 cut(s)	166
BsiSI	CCGG	3 cut(s)	708, 771, 1137
BslI	CCNNNNNNNGG	5 cut(s)	160, 607, 642, 793, 963
BsmAI	GTCTC	1 cut(s)	506
BsmI	GAATGC	3 cut(s)	592, 1031, 1104
BsnI	GGCC	4 cut(s)	132, 243, 600, 1001
Bsp119I	TTCGAA	1 cut(s)	640
Bsp120I	GGGCCC	2 cut(s)	130, 999
Bsp1286I	GDGCHC	2 cut(s)	134, 1003
Bsp143I	GATC	9 cut(s)	43, 150, 163, 167, 265, 367, 628, 722, 1120
BspACI	CCGC	2 cut(s)	578, 1014
BspANI	GGCC	4 cut(s)	132, 243, 600, 1001
BspCNI	CTCAG	4 cut(s)	20, 474, 583, 667
BspDI	ATCGAT	1 cut(s)	166
BspHI	TCATGA	1 cut(s)	343
BspLI	GGNNCC	5 cut(s)	132, 395, 630, 769, 1001
BspMAI	CTGCAG	1 cut(s)	408
BspPI	GGATC	6 cut(s)	145, 171, 375, 623, 636, 1115
BspT104I	TTCGAA	1 cut(s)	640
BspT107I	GGYRCC	2 cut(s)	393, 767
BsrFI	RCCGGY	1 cut(s)	770
BsrI	ACTGG	3 cut(s)	766, 909, 1071
BssAI	RCCGGY	1 cut(s)	770
BssECI	CCNNGG	2 cut(s)	708, 1003
BssMI	GATC	9 cut(s)	43, 150, 163, 167, 265, 367, 628, 722, 1120
BssNI	GRCGYC	1 cut(s)	394
BssT1I	CCWWGG	1 cut(s)	1003
Bst2UI	CCWGG	2 cut(s)	452, 935
Bst4CI	ACNGT	5 cut(s)	96, 123, 307, 432, 1100
Bst6I	CTCTTC	1 cut(s)	540
BstACI	GRCGYC	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	640
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	8 cut(s)	7, 171, 461, 591, 675, 719, 1036, 1053
BstF5I	GGATG	5 cut(s)	186, 415, 601, 802, 888
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	9 cut(s)	46, 153, 166, 170, 268, 370, 631, 725, 1123
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	9 cut(s)	43, 150, 163, 167, 265, 367, 628, 722, 1120
BstNI	CCWGG	2 cut(s)	452, 935
BstSCI	CCNGG	3 cut(s)	450, 707, 933
BstSFI	CTRYAG	3 cut(s)	51, 404, 825
BstSLI	GKGCMC	2 cut(s)	134, 1003
BstV1I	GCAGC	1 cut(s)	1015
BstX2I	RGATCY	2 cut(s)	367, 628
BstYI	RGATCY	2 cut(s)	367, 628
Bsu15I	ATCGAT	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	574
BsuRI	GGCC	4 cut(s)	132, 243, 600, 1001
BsuTUI	ATCGAT	1 cut(s)	166
BtsCI	GGATG	5 cut(s)	186, 415, 601, 802, 888
BtsIMutI	CAGTG	1 cut(s)	15
Cac8I	GCNNGC	1 cut(s)	672
CciI	TCATGA	1 cut(s)	343
CfoI	GCGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	770
Cfr13I	GGNCC	5 cut(s)	130, 131, 915, 999, 1000
ClaI	ATCGAT	1 cut(s)	166
Csp6I	GTAC	2 cut(s)	56, 76
CviAII	CATG	3 cut(s)	197, 344, 500
CviQI	GTAC	2 cut(s)	56, 76
DdeI	CTNAG	8 cut(s)	7, 171, 461, 591, 675, 719, 1036, 1053
DinI	GGCGCC	1 cut(s)	395
DpnI	GATC	9 cut(s)	45, 152, 165, 169, 267, 369, 630, 724, 1122
DpnII	GATC	9 cut(s)	43, 150, 163, 167, 265, 367, 628, 722, 1120
DraIII	CACNNNGTG	2 cut(s)	64, 963
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	1003
Eco24I	GRGCYC	2 cut(s)	134, 1003
Eco47I	GGWCC	1 cut(s)	915
EcoRI	GAATTC	1 cut(s)	777
EcoRII	CCWGG	2 cut(s)	450, 933
EcoT14I	CCWWGG	1 cut(s)	1003
EcoT22I	ATGCAT	1 cut(s)	698
EcoT38I	GRGCYC	2 cut(s)	134, 1003
EgeI	GGCGCC	1 cut(s)	395
EheI	GGCGCC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	1003
FaeI	CATG	3 cut(s)	200, 347, 503
FatI	CATG	3 cut(s)	196, 343, 499
FbaI	TGATCA	2 cut(s)	43, 265
Fnu4HI	GCNGC	1 cut(s)	1029
FokI	GGATG	5 cut(s)	193, 402, 608, 809, 875
FriOI	GRGCYC	2 cut(s)	134, 1003
Fsp4HI	GCNGC	1 cut(s)	1029
FspBI	CTAG	1 cut(s)	683
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	1029
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	4 cut(s)	132, 243, 600, 1001
HapII	CCGG	3 cut(s)	708, 771, 1137
HhaI	GCGC	1 cut(s)	396
Hin1I	GRCGYC	1 cut(s)	394
Hin1II	CATG	3 cut(s)	200, 347, 503
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HincII	GTYRAC	1 cut(s)	532
HindII	GTYRAC	1 cut(s)	532
HindIII	AAGCTT	1 cut(s)	320
HinfI	GANTC	6 cut(s)	13, 439, 860, 872, 1040, 1049
HpaI	GTTAAC	1 cut(s)	532
HpaII	CCGG	3 cut(s)	708, 771, 1137
HphI	GGTGA	2 cut(s)	160, 554
Hpy166II	GTNNAC	3 cut(s)	58, 428, 532
Hpy188I	TCNGA	3 cut(s)	511, 915, 1048
Hpy188III	TCNNGA	6 cut(s)	263, 344, 353, 377, 443, 661
Hpy8I	GTNNAC	3 cut(s)	58, 428, 532
HpyAV	CCTTC	5 cut(s)	384, 486, 608, 636, 1138
HpyCH4III	ACNGT	5 cut(s)	96, 123, 307, 432, 1100
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	4 cut(s)	406, 696, 758, 1031
HpyF3I	CTNAG	8 cut(s)	7, 171, 461, 591, 675, 719, 1036, 1053
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	394
Hsp92II	CATG	3 cut(s)	200, 347, 503
HspAI	GCGC	1 cut(s)	394
KasI	GGCGCC	1 cut(s)	393
Ksp22I	TGATCA	2 cut(s)	43, 265
KspAI	GTTAAC	1 cut(s)	532
Kzo9I	GATC	9 cut(s)	43, 150, 163, 167, 265, 367, 628, 722, 1120
Lsp1109I	GCAGC	1 cut(s)	1015
LweI	GCATC	2 cut(s)	171, 839
MaeI	CTAG	1 cut(s)	683
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	408, 1007
MalI	GATC	9 cut(s)	45, 152, 165, 169, 267, 369, 630, 724, 1122
MboI	GATC	9 cut(s)	43, 150, 163, 167, 265, 367, 628, 722, 1120
MboII	GAAGA	4 cut(s)	232, 513, 557, 1096
MflI	RGATCY	2 cut(s)	367, 628
MhlI	GDGCHC	2 cut(s)	134, 1003
Mly113I	GGCGCC	1 cut(s)	394
MlyI	GAGTC	3 cut(s)	433, 866, 1043
MmeI	TCCRAC	2 cut(s)	510, 893
MnlI	CCTC	9 cut(s)	16, 305, 470, 541, 586, 611, 745, 862, 874
Mph1103I	ATGCAT	1 cut(s)	698
MseI	TTAA	3 cut(s)	117, 531, 929
MspA1I	CMGCKG	1 cut(s)	1014
MspI	CCGG	3 cut(s)	708, 771, 1137
MspR9I	CCNGG	3 cut(s)	452, 709, 935
Mva1269I	GAATGC	3 cut(s)	592, 1031, 1104
MvaI	CCWGG	2 cut(s)	452, 935
NarI	GGCGCC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	709
NdeII	GATC	9 cut(s)	43, 150, 163, 167, 265, 367, 628, 722, 1120
NlaIII	CATG	3 cut(s)	200, 347, 503
NlaIV	GGNNCC	5 cut(s)	132, 395, 630, 769, 1001
NmuCI	GTSAC	1 cut(s)	1007
NsiI	ATGCAT	1 cut(s)	698
NspV	TTCGAA	1 cut(s)	640
PagI	TCATGA	1 cut(s)	343
PctI	GAATGC	3 cut(s)	592, 1031, 1104
PfeI	GAWTC	3 cut(s)	13, 860, 1040
PflMI	CCANNNNNTGG	1 cut(s)	963
PfoI	TCCNGGA	1 cut(s)	933
PkrI	GCNGC	1 cut(s)	1030
PleI	GAGTC	3 cut(s)	433, 866, 1043
PluTI	GGCGCC	1 cut(s)	397
PpsI	GAGTC	3 cut(s)	433, 866, 1043
PshBI	ATTAAT	1 cut(s)	929
Psp6I	CCWGG	2 cut(s)	450, 933
PspGI	CCWGG	2 cut(s)	450, 933
PspN4I	GGNNCC	5 cut(s)	132, 395, 630, 769, 1001
PspOMI	GGGCCC	2 cut(s)	130, 999
PspPI	GGNCC	5 cut(s)	130, 131, 915, 999, 1000
PstI	CTGCAG	1 cut(s)	408
PsuI	RGATCY	2 cut(s)	367, 628
RsaI	GTAC	2 cut(s)	57, 77
RsaNI	GTAC	2 cut(s)	56, 76
SaqAI	TTAA	3 cut(s)	117, 531, 929
SatI	GCNGC	1 cut(s)	1029
Sau3AI	GATC	9 cut(s)	43, 150, 163, 167, 265, 367, 628, 722, 1120
Sau96I	GGNCC	5 cut(s)	130, 131, 915, 999, 1000
ScaI	AGTACT	1 cut(s)	77
SchI	GAGTC	3 cut(s)	433, 866, 1043
ScrFI	CCNGG	3 cut(s)	452, 709, 935
SduI	GDGCHC	2 cut(s)	134, 1003
SfaNI	GCATC	2 cut(s)	171, 839
SfcI	CTRYAG	3 cut(s)	51, 404, 825
SfoI	GGCGCC	1 cut(s)	395
SfuI	TTCGAA	1 cut(s)	640
SinI	GGWCC	1 cut(s)	915
SsiI	CCGC	2 cut(s)	578, 1014
SspDI	GGCGCC	1 cut(s)	393
SspMI	CTAG	1 cut(s)	683
StyD4I	CCNGG	3 cut(s)	450, 707, 933
StyI	CCWWGG	1 cut(s)	1003
TaaI	ACNGT	5 cut(s)	96, 123, 307, 432, 1100
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	166, 640
TatI	WGTACW	2 cut(s)	55, 75
TfiI	GAWTC	3 cut(s)	13, 860, 1040
Tru1I	TTAA	3 cut(s)	117, 531, 929
Tru9I	TTAA	3 cut(s)	117, 531, 929
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	1007
TseI	GCWGC	1 cut(s)	1028
Tsp45I	GTSAC	1 cut(s)	1007
TspDTI	ATGAA	6 cut(s)	239, 251, 332, 404, 588, 834
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	15
Van91I	CCANNNNNTGG	1 cut(s)	963
VpaK11BI	GGWCC	1 cut(s)	915
VspI	ATTAAT	1 cut(s)	929
XapI	RAATTY	3 cut(s)	727, 777, 898
XspI	CTAG	1 cut(s)	683
ZrmI	AGTACT	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.