Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007169

Physical Location & Seq

Genomic Coordinates Reverse (-)

10908045 .. 10910037

Gene Structure 1993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTATTCAACAATTATACACTCCCTAAATCGATATCTGCACCCGCACTCTATTCTTCTCCACTGTCATACTAGGGACTTAGGGTTAGGGTTTTTCGCGCCCAGGGTTCAAACCCTAGCTGCAACAATGGCCAGGTACAGAAGCCGAAGCAGAAGCTACAGCCCTCGTCGGCGCAGCCGGACTCCGCCGCGTGGACGCAAGCGATACGACGACGAGCCGGGCGATCGACACCGTGACAGTAGGTCTCACAGAGACCGTAGCTCACCCGCCCCTTCTGGCTTGCTCGTTCGCAATCTCCCTCTCGACGCTAGGCCAGAAGATCTTAGGATCCCATTTGAGCGATTTGGCCCGGTAAAGGATGTGTATCTTCCAAAGAATTACTACACGGGGGAGCCACGGGGTTTTGGGTTTGTGAAGTACCGTTTTGGTGAGGATGCAGCGGAAGCAAAGCAACAGTTGAATCATACAGTTATTGGTGGGCGTGAGATAAGAATTGTGTTTGCTGAGGAGAATAGAAAAACTCCTCAAGAAATGCGCACAACTACTCGCGTAAGTAGTCGACATGGAGGAAGCTCCAGAAGGAGAACTCCACTGAGGTCCCCAAGACGGCAATATCATTCTTACTCGCCGTCACCATCACCTGTTAGGCGTTACTCAAGATATAATTTAAAGACTTTTGGATTAGTAAAGTTTAATGAGAAAAGAGATCATAAAAGTGACGGGCAACTTCTTTACCTTCCACCAATGGTCTCCATAAGTACTATCTGTATCCACCATCAACTTTCATCCACAAATGGCATTGGGTTCCTATTGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000244 GO:0000245 GO:0000375 GO:0000377 GO:0000381 GO:0000387 GO:0000395 GO:0000398 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006376 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022607 GO:0022613 GO:0022618 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0033119 GO:0034622 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0045292 GO:0045934 GO:0046483 GO:0048024 GO:0048025 GO:0048519 GO:0048523 GO:0050684 GO:0050686 GO:0050733 GO:0050789 GO:0050794 GO:0051082 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:1901360 GO:1903311 GO:1903312

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

273

Amino Acids

31.61

Weight (kDa)

10.96

Isoelectric Point (pI)

74.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	94 - 164	1.7e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18810 AT5G18810
fragaria_vesca	FvH4_4g16920 FvH4_4g16920 FvH4_4g16920 FvH4_4g16920
malus_domestica	MD13G1175700.v1.1 MD16G1177500.v1.1
prunus_persica	Prupe.1G144400_v2.0.a1
pyrus_communis	pycom13g15140 pycom16g14890
rosa_chinensis	RchiOBHm_Chr4g0420501
rosa_laevigata	RLG00000007756
rosa_multiflora	Rmu_sc0002248.1_g000049 Rmu_sc0009913.1_g000001 Rmu_sc0020995.1_g000014
rosa_roxburghii	Rroxscaffold_5G00363120
rosa_rugosa	Rorug04G0164400 Rorug04G0164500 Rorug04G0164600
rosa_samantha	Rh4AG226100 Rh4BG228700 Rh4CG240400 Rh4DG224400
rosa_wichuraiana	Rw4G019510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	536
AccI	GTMKAC	1 cut(s)	559
AccII	CGCG	3 cut(s)	98, 190, 549
AciI	CCGC	5 cut(s)	44, 185, 188, 267, 440
AclWI	GGATC	2 cut(s)	322, 335
AcoI	YGGCCR	1 cut(s)	129
AfaI	GTAC	3 cut(s)	137, 419, 760
AfiI	CCNNNNNNNGG	3 cut(s)	191, 355, 606
AgsI	TTSAA	3 cut(s)	9, 110, 460
AhdI	GACNNNNNGTC	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	101, 131
AluBI	AGCT	4 cut(s)	119, 156, 261, 573
AluI	AGCT	4 cut(s)	119, 156, 261, 573
Alw26I	GTCTC	3 cut(s)	246, 249, 754
AlwI	GGATC	2 cut(s)	322, 335
AoxI	GGCC	3 cut(s)	129, 311, 346
ApeKI	GCWGC	3 cut(s)	119, 174, 437
AspLEI	GCGC	3 cut(s)	100, 174, 537
AspS9I	GGNCC	2 cut(s)	347, 597
AsuC2I	CCSGG	2 cut(s)	219, 350
AsuHPI	GGTGA	4 cut(s)	255, 440, 624, 630
AvaII	GGWCC	1 cut(s)	597
BalI	TGGCCA	1 cut(s)	131
BamHI	GGATCC	1 cut(s)	327
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	3 cut(s)	106, 186, 449
BccI	CCATC	2 cut(s)	643, 783
BceAI	ACGGC	2 cut(s)	613, 623
BciT130I	CCWGG	2 cut(s)	103, 133
BciVI	GTATCC	1 cut(s)	779
BcnI	CCSGG	2 cut(s)	219, 350
BcoDI	GTCTC	3 cut(s)	246, 249, 754
BfaI	CTAG	3 cut(s)	72, 116, 309
BfmI	CTRYAG	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	779
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	4 cut(s)	120, 175, 188, 438
BlsI	GCNGC	4 cut(s)	121, 176, 189, 439
BmcAI	AGTACT	1 cut(s)	760
Bme1390I	CCNGG	4 cut(s)	103, 133, 219, 350
Bme18I	GGWCC	1 cut(s)	597
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmgT120I	GGNCC	2 cut(s)	347, 597
BmiI	GGNNCC	4 cut(s)	329, 393, 599, 806
BmrFI	CCNGG	4 cut(s)	103, 133, 219, 350
BmsI	GCATC	1 cut(s)	424
BpmI	CTGGAG	1 cut(s)	559
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	2 cut(s)	510, 640
BpuMI	CCSGG	2 cut(s)	219, 350
Bsa29I	ATCGAT	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	363
BsaI	GGTCTC	3 cut(s)	246, 249, 754
BsaJI	CCNNGG	3 cut(s)	101, 102, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 355, 606
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	2 cut(s)	103, 133
BseCI	ATCGAT	1 cut(s)	31
BseDI	CCNNGG	3 cut(s)	101, 102, 395
BseGI	GGATG	3 cut(s)	364, 439, 785
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	3 cut(s)	191, 355, 606
BseMII	CTCAG	2 cut(s)	495, 584
BseRI	GAGGAG	2 cut(s)	513, 521
BseXI	GCAGC	3 cut(s)	106, 186, 449
BsgI	GTGCAG	1 cut(s)	23
Bsh1236I	CGCG	3 cut(s)	98, 190, 549
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	131, 313, 348
BshVI	ATCGAT	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	226
BsiSI	CCGG	3 cut(s)	178, 218, 350
BslFI	GGGAC	2 cut(s)	89, 583
BslI	CCNNNNNNNGG	3 cut(s)	191, 355, 606
BsmAI	GTCTC	3 cut(s)	246, 249, 754
BsmFI	GGGAC	2 cut(s)	89, 583
BsnI	GGCC	3 cut(s)	131, 313, 348
Bso31I	GGTCTC	3 cut(s)	246, 249, 754
Bsp143I	GATC	4 cut(s)	223, 319, 327, 706
BspACI	CCGC	5 cut(s)	44, 185, 188, 267, 440
BspANI	GGCC	3 cut(s)	131, 313, 348
BspCNI	CTCAG	2 cut(s)	496, 585
BspDI	ATCGAT	1 cut(s)	31
BspFNI	CGCG	3 cut(s)	98, 190, 549
BspLI	GGNNCC	4 cut(s)	329, 393, 599, 806
BspPI	GGATC	2 cut(s)	322, 335
BspTNI	GGTCTC	3 cut(s)	246, 249, 754
BssECI	CCNNGG	3 cut(s)	101, 102, 395
BssMI	GATC	4 cut(s)	223, 319, 327, 706
Bst2UI	CCWGG	2 cut(s)	103, 133
Bst4CI	ACNGT	7 cut(s)	65, 233, 239, 257, 422, 456, 469
BstC8I	GCNNGC	2 cut(s)	200, 281
BstDEI	CTNAG	4 cut(s)	79, 323, 504, 593
BstDSI	CCRYGG	1 cut(s)	395
BstF5I	GGATG	3 cut(s)	364, 439, 785
BstFNI	CGCG	3 cut(s)	98, 190, 549
BstHHI	GCGC	3 cut(s)	100, 174, 537
BstKTI	GATC	4 cut(s)	226, 322, 330, 709
BstMAI	GTCTC	3 cut(s)	246, 249, 754
BstMBI	GATC	4 cut(s)	223, 319, 327, 706
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 443
BstNI	CCWGG	2 cut(s)	103, 133
BstSCI	CCNGG	4 cut(s)	101, 131, 217, 348
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	3 cut(s)	98, 190, 549
BstV1I	GCAGC	3 cut(s)	106, 186, 449
BstX2I	RGATCY	2 cut(s)	319, 327
BstYI	RGATCY	2 cut(s)	319, 327
Bsu15I	ATCGAT	1 cut(s)	31
BsuI	GTATCC	1 cut(s)	779
BsuRI	GGCC	3 cut(s)	131, 313, 348
BsuTUI	ATCGAT	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	395
BtsCI	GGATG	3 cut(s)	364, 439, 785
BtsIMutI	CAGTG	2 cut(s)	61, 590
Cac8I	GCNNGC	2 cut(s)	200, 281
CfoI	GCGC	3 cut(s)	100, 174, 537
Cfr13I	GGNCC	2 cut(s)	347, 597
ClaI	ATCGAT	1 cut(s)	31
CseI	GACGC	2 cut(s)	204, 314
Csp6I	GTAC	3 cut(s)	136, 418, 759
CviAII	CATG	1 cut(s)	563
CviQI	GTAC	3 cut(s)	136, 418, 759
DdeI	CTNAG	4 cut(s)	79, 323, 504, 593
DpnI	GATC	4 cut(s)	225, 321, 329, 708
DpnII	GATC	4 cut(s)	223, 319, 327, 706
DraI	TTTAAA	1 cut(s)	669
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EciI	GGCGGA	1 cut(s)	174
Eco31I	GGTCTC	3 cut(s)	246, 249, 754
Eco32I	GATATC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	597
EcoO109I	RGGNCCY	1 cut(s)	597
EcoRII	CCWGG	2 cut(s)	101, 131
EcoRV	GATATC	1 cut(s)	35
FaeI	CATG	1 cut(s)	566
FaiI	YATR	8 cut(s)	17, 69, 465, 564, 663, 711, 755, 817
FaqI	GGGAC	2 cut(s)	89, 583
FatI	CATG	1 cut(s)	562
FauI	CCCGC	2 cut(s)	51, 274
FblI	GTMKAC	1 cut(s)	559
Fnu4HI	GCNGC	4 cut(s)	120, 175, 188, 438
FokI	GGATG	3 cut(s)	371, 446, 772
Fsp4HI	GCNGC	4 cut(s)	120, 175, 188, 438
FspAI	RTGCGCAY	1 cut(s)	536
FspBI	CTAG	3 cut(s)	72, 116, 309
FspI	TGCGCA	1 cut(s)	536
GlaI	GCGC	3 cut(s)	99, 173, 536
GluI	GCNGC	4 cut(s)	120, 175, 188, 438
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	3 cut(s)	131, 313, 348
HapII	CCGG	3 cut(s)	178, 218, 350
HgaI	GACGC	2 cut(s)	204, 314
HhaI	GCGC	3 cut(s)	100, 174, 537
Hin1II	CATG	1 cut(s)	566
Hin6I	GCGC	3 cut(s)	98, 172, 535
HinP1I	GCGC	3 cut(s)	98, 172, 535
HincII	GTYRAC	1 cut(s)	560
HindII	GTYRAC	1 cut(s)	560
HinfI	GANTC	2 cut(s)	181, 460
HpaII	CCGG	3 cut(s)	178, 218, 350
HphI	GGTGA	4 cut(s)	255, 440, 624, 630
Hpy166II	GTNNAC	2 cut(s)	194, 560
Hpy188III	TCNNGA	4 cut(s)	302, 527, 576, 657
Hpy8I	GTNNAC	2 cut(s)	194, 560
Hpy99I	CGWCG	4 cut(s)	171, 212, 215, 308
HpyAV	CCTTC	3 cut(s)	282, 573, 746
HpyCH4III	ACNGT	7 cut(s)	65, 233, 239, 257, 422, 456, 469
HpyCH4V	TGCA	3 cut(s)	40, 122, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 443
HpyF3I	CTNAG	4 cut(s)	79, 323, 504, 593
Hsp92II	CATG	1 cut(s)	566
HspAI	GCGC	3 cut(s)	98, 172, 535
Kzo9I	GATC	4 cut(s)	223, 319, 327, 706
LmnI	GCTCC	2 cut(s)	391, 578
Lsp1109I	GCAGC	3 cut(s)	106, 186, 449
LweI	GCATC	1 cut(s)	424
MaeI	CTAG	3 cut(s)	72, 116, 309
MaeIII	GTNAC	4 cut(s)	233, 630, 650, 716
MalI	GATC	4 cut(s)	225, 321, 329, 708
MboI	GATC	4 cut(s)	223, 319, 327, 706
MboII	GAAGA	3 cut(s)	47, 329, 359
MflI	RGATCY	2 cut(s)	319, 327
MlsI	TGGCCA	1 cut(s)	131
MluCI	AATT	4 cut(s)	12, 376, 492, 664
MluNI	TGGCCA	1 cut(s)	131
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	7 cut(s)	174, 309, 424, 499, 534, 560, 588
Mox20I	TGGCCA	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	131
MseI	TTAA	2 cut(s)	668, 693
MslI	CAYNNNNRTG	1 cut(s)	714
Msp20I	TGGCCA	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	3 cut(s)	178, 218, 350
MspR9I	CCNGG	4 cut(s)	103, 133, 219, 350
MvaI	CCWGG	2 cut(s)	103, 133
MvnI	CGCG	3 cut(s)	98, 190, 549
MwoI	GCNNNNNNNGC	2 cut(s)	128, 443
NciI	CCSGG	2 cut(s)	219, 350
NdeII	GATC	4 cut(s)	223, 319, 327, 706
NlaIII	CATG	1 cut(s)	566
NlaIV	GGNNCC	4 cut(s)	329, 393, 599, 806
NmuCI	GTSAC	3 cut(s)	233, 630, 716
NsbI	TGCGCA	1 cut(s)	536
PasI	CCCWGGG	1 cut(s)	102
PcsI	WCGNNNNNNNCGW	1 cut(s)	219
PfeI	GAWTC	1 cut(s)	460
PkrI	GCNGC	4 cut(s)	121, 176, 189, 439
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	597
Psp5II	RGGWCCY	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	101, 131
PspGI	CCWGG	2 cut(s)	101, 131
PspN4I	GGNNCC	4 cut(s)	329, 393, 599, 806
PspPI	GGNCC	2 cut(s)	347, 597
PspPPI	RGGWCCY	1 cut(s)	597
PsuI	RGATCY	2 cut(s)	319, 327
PvuI	CGATCG	1 cut(s)	226
RsaI	GTAC	3 cut(s)	137, 419, 760
RsaNI	GTAC	3 cut(s)	136, 418, 759
RseI	CAYNNNNRTG	1 cut(s)	714
SalI	GTCGAC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	668, 693
SatI	GCNGC	4 cut(s)	120, 175, 188, 438
Sau3AI	GATC	4 cut(s)	223, 319, 327, 706
Sau96I	GGNCC	2 cut(s)	347, 597
ScaI	AGTACT	1 cut(s)	760
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	4 cut(s)	103, 133, 219, 350
SetI	ASST	9 cut(s)	121, 137, 158, 245, 263, 575, 599, 643, 738
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	714
SmlI	CTYRAG	2 cut(s)	525, 655
SmoI	CTYRAG	2 cut(s)	525, 655
Sse9I	AATT	4 cut(s)	12, 376, 492, 664
SsiI	CCGC	5 cut(s)	44, 185, 188, 267, 440
SspMI	CTAG	3 cut(s)	72, 116, 309
StyD4I	CCNGG	4 cut(s)	101, 131, 217, 348
TaaI	ACNGT	7 cut(s)	65, 233, 239, 257, 422, 456, 469
TaqI	TCGA	4 cut(s)	31, 226, 303, 559
TasI	AATT	4 cut(s)	12, 376, 492, 664
TatI	WGTACW	1 cut(s)	758
TauI	GCSGC	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	460
Tru1I	TTAA	2 cut(s)	668, 693
Tru9I	TTAA	2 cut(s)	668, 693
TscAI	CASTG	2 cut(s)	68, 597
TseFI	GTSAC	3 cut(s)	233, 630, 716
TseI	GCWGC	3 cut(s)	119, 174, 437
Tsp45I	GTSAC	3 cut(s)	233, 630, 716
TspDTI	ATGAA	1 cut(s)	774
TspRI	CASTG	2 cut(s)	68, 597
VpaK11BI	GGWCC	1 cut(s)	597
XmiI	GTMKAC	1 cut(s)	559
XspI	CTAG	3 cut(s)	72, 116, 309
ZrmI	AGTACT	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.