Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010822

Physical Location & Seq

Genomic Coordinates Forward (+)

11252074 .. 11256031

Gene Structure 3958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGTTCTTTGGGAAATGGGAGAGAGAGAGCAAATGGAGAGAAAGGAGCAGAGCAGGAGGAGGAGGAGGAGCCGATATTAATGGAGCAGACGCAGAGGTTCTGTATGTTTCCTGTTCGGTACAAGCAAGTCTGGGAGATGTACAAGAAGGCCGTGGCCAGTTTCTGGACTGCTGAGGAGGTTGATCTCTCCCATGATATACAGCAGTGGGACACTTTGTCTGACTCTGAAAGACACTTTATAAGCCATGTCCTTGCATTTTTTGCTGCATCTGATGGGATTGTTTTGGAGAATTTGGCTGCAAGATTTCTAACTGATGTTCAGATTCCAGAGGCTCGGGCATTCTATGGATTTCAACTTGCAATGGAGAATATCCATTCGGAGATGTACAGCTTGCTTTTGGAGACATACATCAAGGATTCTACGGAGAAGCATAGATTGTTCAATGCAATTGAAAGCATTCCTTGTGTGTCTAAGAAGGCTAAGTGGGCTTTGGATTGGATAGACAGTTCCAATTCATTTGCGGAGAGACTTGTTGCTTTTGCGTGTGTTGAAGGAATCTTTTTCTCCGGAAGCTTCTGTGCCATATTCTGGCTTAAAAAGAGGGGACTAATGCCTGGGTTGACATTCTCAAACGAGCTTATATCTAGAGATGAGGGTCTTCACTGTGATTTTGCTTGCCTTTTGTACAGTTTGTTGCAGAAGCAACTAAATTGGGAAAAAGTTCATGGAATTATAAATGAAGCTGTCGAGATTGAGACTCAATTTGTTTGTGAGGCCCTCCCATGCGCATTGATTGGCATGAACTCAGATCTTATGAGCCAGTACATAAAATATGTTGCTGATCGACTCTTGGTTGCGTTAGATTGTCAGAGGAAGTACAATGTCAAAAATCCTTTTGACTGGATGGAGTTTATTTCTTTGCAAGGAAAGACGAACTTTTTCGAGAGAAGGGTTGGTGACTATCAAAAAGCATCTGTTATGTCAGGCCTCCAAGATGGTGGCAAAAACTTCATCTTCAAGTTGGACGCCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004748 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005971 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009117 GO:0009259 GO:0009987 GO:0016491 GO:0016725 GO:0016728 GO:0019637 GO:0019693 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0044260 GO:0044281 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046483 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0051726 GO:0055086 GO:0055114 GO:0061731 GO:0065007 GO:0071704 GO:0090304 GO:1901135 GO:1901360 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko00480 ko00983 ko01100 ko04115 map00230 map00240 map00480 map00983 map01100 map04115

Pfam Domains

Protein Families

Ribonuc_red_sm

Protein Analysis

347

Amino Acids

39.78

Weight (kDa)

5.01

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuc_red_sm	PF00268	33 - 299	1.1e-115	Ribonucleotide reductase, small chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010822)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23580
fragaria_vesca	FvH4_4g14370 FvH4_4g14370
malus_domestica	MD13G1182000.v1.1 MD16G1182500.v1.1
prunus_persica	Prupe.1G149900_v2.0.a1 Prupe.1G149900_v2.0.a1
pyrus_communis	pycom13g15710 pycom16g15320
rosa_chinensis	RchiOBHm_Chr4g0418551
rosa_laevigata	RLG00000007854
rosa_multiflora	Rmu_sc0000363.1_g000039
rosa_roxburghii	Rroxscaffold_5G00361810
rosa_rugosa	Rorug04G0154200 Rorug04G0154300
rosa_samantha	Rh4AG215800 Rh4BG214900 Rh4CG227400 Rh4DG214100
rosa_wichuraiana	Rw4G018260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	242, 737
Acc16I	TGCGCA	1 cut(s)	790
AccB7I	CCANNNNNTGG	2 cut(s)	165, 591
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	1 cut(s)	524
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	292
AcyI	GRCGYC	1 cut(s)	1029
AfaI	GTAC	6 cut(s)	122, 143, 389, 689, 827, 881
AfiI	CCNNNNNNNGG	2 cut(s)	165, 591
AgsI	TTSAA	5 cut(s)	356, 445, 455, 554, 1021
AhdI	GACNNNNNGTC	1 cut(s)	217
AjnI	CCWGG	1 cut(s)	616
AloI	GAACNNNNNNTCC	2 cut(s)	493, 525
AluBI	AGCT	4 cut(s)	393, 576, 640, 746
AluI	AGCT	4 cut(s)	393, 576, 640, 746
Alw26I	GTCTC	3 cut(s)	398, 523, 752
AlwNI	CAGNNNCTG	1 cut(s)	165
Ama87I	CYCGRG	1 cut(s)	336
Aor13HI	TCCGGA	1 cut(s)	569
AoxI	GGCC	4 cut(s)	150, 156, 777, 988
ApeKI	GCWGC	2 cut(s)	266, 299
ApoI	RAATTY	1 cut(s)	292
AseI	ATTAAT	1 cut(s)	80
Asp700I	GAANNNNTTC	3 cut(s)	459, 723, 941
AspLEI	GCGC	1 cut(s)	791
AspS9I	GGNCC	1 cut(s)	778
AsuHPI	GGTGA	1 cut(s)	971
AvaI	CYCGRG	1 cut(s)	336
BalI	TGGCCA	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	653
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	253, 286
BccI	CCATC	3 cut(s)	269, 901, 992
BceAI	ACGGC	1 cut(s)	137
BciT130I	CCWGG	1 cut(s)	618
BcoDI	GTCTC	3 cut(s)	398, 523, 752
BfaI	CTAG	2 cut(s)	648, 1039
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	2 cut(s)	267, 300
BlsI	GCNGC	2 cut(s)	268, 301
Bme1390I	CCNGG	1 cut(s)	618
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	1 cut(s)	778
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	618
BmsI	GCATC	2 cut(s)	278, 983
BpiI	GAAGAC	1 cut(s)	653
Bpu10I	CCTNAGC	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	1029
BsaJI	CCNNGG	2 cut(s)	153, 617
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	165, 591
Bse1I	ACTGG	3 cut(s)	159, 823, 908
Bse3DI	GCAATG	1 cut(s)	369
BseAI	TCCGGA	1 cut(s)	569
BseBI	CCWGG	1 cut(s)	618
BseDI	CCNNGG	2 cut(s)	153, 617
BseGI	GGATG	1 cut(s)	912
BseLI	CCNNNNNNNGG	2 cut(s)	165, 591
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	2 cut(s)	165, 822
BseNI	ACTGG	3 cut(s)	159, 823, 908
BseRI	GAGGAG	5 cut(s)	74, 77, 80, 83, 191
BseXI	GCAGC	2 cut(s)	253, 286
BshFI	GGCC	4 cut(s)	152, 158, 779, 990
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	570
BslFI	GGGAC	2 cut(s)	224, 621
BslI	CCNNNNNNNGG	2 cut(s)	165, 591
BsmAI	GTCTC	3 cut(s)	398, 523, 752
BsmFI	GGGAC	2 cut(s)	224, 621
BsmI	GAATGC	2 cut(s)	341, 459
BsnI	GGCC	4 cut(s)	152, 158, 779, 990
BsoBI	CYCGRG	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	569
Bsp1407I	TGTACA	3 cut(s)	141, 387, 687
Bsp143I	GATC	3 cut(s)	184, 811, 844
BspACI	CCGC	1 cut(s)	524
BspANI	GGCC	4 cut(s)	152, 158, 779, 990
BspCNI	CTCAG	2 cut(s)	166, 821
BspEI	TCCGGA	1 cut(s)	569
BspLI	GGNNCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	369
BsrGI	TGTACA	3 cut(s)	141, 387, 687
BsrI	ACTGG	3 cut(s)	159, 823, 908
BssECI	CCNNGG	2 cut(s)	153, 617
BssMI	GATC	3 cut(s)	184, 811, 844
BssNI	GRCGYC	1 cut(s)	1029
Bst2UI	CCWGG	1 cut(s)	618
Bst4CI	ACNGT	3 cut(s)	509, 668, 692
BstACI	GRCGYC	1 cut(s)	1029
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	3 cut(s)	141, 387, 687
BstC8I	GCNNGC	2 cut(s)	395, 679
BstDEI	CTNAG	4 cut(s)	174, 474, 483, 808
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	912
BstHHI	GCGC	1 cut(s)	791
BstKTI	GATC	3 cut(s)	187, 814, 847
BstMAI	GTCTC	3 cut(s)	398, 523, 752
BstMBI	GATC	3 cut(s)	184, 811, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 488
BstNI	CCWGG	1 cut(s)	618
BstSCI	CCNGG	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	253, 286
BstV2I	GAAGAC	1 cut(s)	653
BstX2I	RGATCY	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	1001
BstYI	RGATCY	1 cut(s)	811
BsuRI	GGCC	4 cut(s)	152, 158, 779, 990
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	912
BtsI	GCAGTG	1 cut(s)	212
BtsIMutI	CAGTG	2 cut(s)	212, 664
Cac8I	GCNNGC	2 cut(s)	395, 679
CaiI	CAGNNNCTG	1 cut(s)	165
CfoI	GCGC	1 cut(s)	791
Cfr13I	GGNCC	1 cut(s)	778
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	6 cut(s)	121, 142, 388, 688, 826, 880
CviAII	CATG	5 cut(s)	194, 248, 728, 786, 802
CviQI	GTAC	6 cut(s)	121, 142, 388, 688, 826, 880
DdeI	CTNAG	4 cut(s)	174, 474, 483, 808
DpnI	GATC	3 cut(s)	186, 813, 846
DpnII	GATC	3 cut(s)	184, 811, 844
DriI	GACNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	156
Eam1105I	GACNNNNNGTC	1 cut(s)	217
Eco147I	AGGCCT	1 cut(s)	990
Eco88I	CYCGRG	1 cut(s)	336
EcoO109I	RGGNCCY	1 cut(s)	778
EcoRII	CCWGG	1 cut(s)	616
FaeI	CATG	5 cut(s)	197, 251, 731, 789, 805
FalI	AAGNNNNNCTT	4 cut(s)	448, 480, 923, 955
FaqI	GGGAC	2 cut(s)	224, 621
FatI	CATG	5 cut(s)	193, 247, 727, 785, 801
Fnu4HI	GCNGC	2 cut(s)	267, 300
FokI	GGATG	1 cut(s)	919
Fsp4HI	GCNGC	2 cut(s)	267, 300
FspAI	RTGCGCAY	1 cut(s)	790
FspBI	CTAG	2 cut(s)	648, 1039
FspI	TGCGCA	1 cut(s)	790
GlaI	GCGC	1 cut(s)	790
GluI	GCNGC	2 cut(s)	267, 300
HaeIII	GGCC	4 cut(s)	152, 158, 779, 990
HapII	CCGG	1 cut(s)	570
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	791
Hin1I	GRCGYC	1 cut(s)	1029
Hin1II	CATG	5 cut(s)	197, 251, 731, 789, 805
Hin6I	GCGC	1 cut(s)	789
HinP1I	GCGC	1 cut(s)	789
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	6 cut(s)	224, 325, 419, 558, 760, 849
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	1 cut(s)	971
Hpy166II	GTNNAC	1 cut(s)	624
Hpy188I	TCNGA	7 cut(s)	223, 229, 274, 324, 382, 811, 873
Hpy188III	TCNNGA	6 cut(s)	166, 329, 570, 648, 751, 946
Hpy8I	GTNNAC	1 cut(s)	624
HpyAV	CCTTC	4 cut(s)	142, 472, 548, 945
HpyCH4III	ACNGT	3 cut(s)	509, 668, 692
HpyCH4V	TGCA	7 cut(s)	257, 269, 302, 362, 449, 700, 925
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 488
HpyF3I	CTNAG	4 cut(s)	174, 474, 483, 808
Hsp92I	GRCGYC	1 cut(s)	1029
Hsp92II	CATG	5 cut(s)	197, 251, 731, 789, 805
HspAI	GCGC	1 cut(s)	789
Kpn2I	TCCGGA	1 cut(s)	569
Kzo9I	GATC	3 cut(s)	184, 811, 844
LmnI	GCTCC	3 cut(s)	47, 70, 85
Lsp1109I	GCAGC	2 cut(s)	253, 286
LweI	GCATC	2 cut(s)	278, 983
MaeI	CTAG	2 cut(s)	648, 1039
MaeIII	GTNAC	1 cut(s)	959
MalI	GATC	3 cut(s)	186, 813, 846
MboI	GATC	3 cut(s)	184, 811, 844
MboII	GAAGA	2 cut(s)	653, 1009
MfeI	CAATTG	1 cut(s)	450
MflI	RGATCY	1 cut(s)	811
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	6 cut(s)	292, 450, 514, 712, 732, 764
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	3 cut(s)	218, 754, 843
MmeI	TCCRAC	1 cut(s)	1005
Mox20I	TGGCCA	1 cut(s)	158
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	3 cut(s)	459, 723, 941
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	2 cut(s)	80, 597
Msp20I	TGGCCA	1 cut(s)	158
MspI	CCGG	1 cut(s)	570
MspR9I	CCNGG	1 cut(s)	618
MunI	CAATTG	1 cut(s)	450
Mva1269I	GAATGC	2 cut(s)	341, 459
MvaI	CCWGG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	263, 488
NdeII	GATC	3 cut(s)	184, 811, 844
NlaIII	CATG	5 cut(s)	197, 251, 731, 789, 805
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	959
NsbI	TGCGCA	1 cut(s)	790
PceI	AGGCCT	1 cut(s)	990
PctI	GAATGC	2 cut(s)	341, 459
PdmI	GAANNNNTTC	3 cut(s)	459, 723, 941
PfeI	GAWTC	3 cut(s)	325, 419, 558
PflMI	CCANNNNNTGG	2 cut(s)	165, 591
PkrI	GCNGC	2 cut(s)	268, 301
PleI	GAGTC	3 cut(s)	218, 754, 843
PpsI	GAGTC	3 cut(s)	218, 754, 843
PshBI	ATTAAT	1 cut(s)	80
PsiI	TTATAA	2 cut(s)	242, 737
Psp6I	CCWGG	1 cut(s)	616
PspGI	CCWGG	1 cut(s)	616
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	165
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	6 cut(s)	122, 143, 389, 689, 827, 881
RsaNI	GTAC	6 cut(s)	121, 142, 388, 688, 826, 880
SaqAI	TTAA	2 cut(s)	80, 597
SatI	GCNGC	2 cut(s)	267, 300
Sau3AI	GATC	3 cut(s)	184, 811, 844
Sau96I	GGNCC	1 cut(s)	778
SchI	GAGTC	3 cut(s)	218, 754, 843
ScrFI	CCNGG	1 cut(s)	618
SetI	ASST	6 cut(s)	101, 183, 395, 578, 642, 748
SfaNI	GCATC	2 cut(s)	278, 983
Sse9I	AATT	6 cut(s)	292, 450, 514, 712, 732, 764
SseBI	AGGCCT	1 cut(s)	990
SsiI	CCGC	1 cut(s)	524
SspMI	CTAG	2 cut(s)	648, 1039
StuI	AGGCCT	1 cut(s)	990
StyD4I	CCNGG	1 cut(s)	616
TaaI	ACNGT	3 cut(s)	509, 668, 692
TaqI	TCGA	3 cut(s)	750, 847, 945
TasI	AATT	6 cut(s)	292, 450, 514, 712, 732, 764
TatI	WGTACW	5 cut(s)	141, 387, 687, 825, 879
TfiI	GAWTC	3 cut(s)	325, 419, 558
Tru1I	TTAA	2 cut(s)	80, 597
Tru9I	TTAA	2 cut(s)	80, 597
TscAI	CASTG	2 cut(s)	212, 671
TseFI	GTSAC	1 cut(s)	959
TseI	GCWGC	2 cut(s)	266, 299
Tsp45I	GTSAC	1 cut(s)	959
TspDTI	ATGAA	5 cut(s)	507, 716, 756, 818, 1003
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	212, 671
Van91I	CCANNNNNTGG	2 cut(s)	165, 591
VspI	ATTAAT	1 cut(s)	80
XapI	RAATTY	1 cut(s)	292
XbaI	TCTAGA	1 cut(s)	647
XmnI	GAANNNNTTC	3 cut(s)	459, 723, 941
XspI	CTAG	2 cut(s)	648, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.