Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0012488

Physical Location & Seq

Genomic Coordinates Reverse (-)

11617442 .. 11618980

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGTCTTTCGCTCCCTCTTCTTCTCTTAATCCAAAACCCATCTCAGCTCCCCCGTCTTCCTCCACGGATCTTCTCGACGACTCGTATGAAGACTGCTGCAGCATCTGCCTCGAGCCGTTCAACTGCGACGACCCGGGCACTATAACCAGCTGCAAACACGAATATCATCTTCACTGTATATTAGAATGGTCACAAAGAAGTAAAGAATGCCCAATTTGTTGGCAGTCATTTTCCCTGAAGGATCCTGCTTTCCAAGAGCTTCTAGCTGCTATACAAAATGAGAAGAACTCAAGGTCAAGAAAAACATCTTCCATGGCACCCCAAACATATCATTCATATGAGGATTTTGATGCTGAGCACGAATCTTTCTCAGATGACTCCGATTTGGATGAGCGCATCATGCAGCATCTTGCTGCTGCTTCTAGCAGAGCTCGTTATGCTCGCAGAAGGGAAAGACAGATCGATCATCTGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0010498 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0051726 GO:0055046 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_2 zf-RING_2 zf-rbx1

Protein Analysis

160

Amino Acids

18.07

Weight (kDa)

5.05

Isoelectric Point (pI)

68.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	29 - 74	3.7e-08	RING-H2 zinc finger domain
zf-ANAPC11	PF12861	29 - 82	5.6e-08	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-RING_2	PF13639	33 - 74	7.2e-08	Ring finger domain
zf-RING_11	PF17123	34 - 61	4.6e-06	RING-like zinc finger
zf-RING_UBOX	PF13445	34 - 67	4e-06	RING-type zinc-finger
zf-C3HC4	PF00097	34 - 74	2.5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012488)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14220
fragaria_vesca	FvH4_4g14860
malus_domestica	MD13G1185900.v1.1 MD16G1186700.v1.1
prunus_persica	Prupe.1G153500_v2.0.a1
pyrus_communis	pycom13g16040 pycom16g15650
rosa_chinensis	RchiOBHm_Chr4g0417351 RchiOBHm_Chr4g0417381
rosa_laevigata	RLG00000007915
rosa_multiflora	Rmu_co8127690.1_g000001 Rmu_sc0004142.1_g000031
rosa_roxburghii	Rroxscaffold_5G00361110
rosa_rugosa	Rorug04G0147200
rosa_samantha	Rh4AG210700 Rh4BG211200 Rh4CG221600 Rh4DG208600
rosa_wichuraiana	Rw4G017800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	319
AclWI	GGATC	3 cut(s)	78, 239, 252
AcuI	CTGAAG	1 cut(s)	260
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	5 cut(s)	50, 153, 262, 269, 434
AluI	AGCT	5 cut(s)	50, 153, 262, 269, 434
Alw21I	GWGCWC	2 cut(s)	363, 436
AlwI	GGATC	3 cut(s)	78, 239, 252
AlwNI	CAGNNNCTG	1 cut(s)	108
Ama87I	CYCGRG	2 cut(s)	113, 136
ApeKI	GCWGC	7 cut(s)	99, 102, 153, 269, 406, 416, 419
AspLEI	GCGC	1 cut(s)	399
AsuC2I	CCSGG	2 cut(s)	137, 138
AvaI	CYCGRG	2 cut(s)	113, 136
BaeGI	GKGCMC	1 cut(s)	143
BamHI	GGATCC	1 cut(s)	244
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	51, 99
Bbv12I	GWGCWC	2 cut(s)	363, 436
BbvI	GCAGC	7 cut(s)	86, 114, 140, 256, 403, 406, 418
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	103
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BcnI	CCSGG	2 cut(s)	137, 138
BfaI	CTAG	3 cut(s)	266, 426, 478
BfmI	CTRYAG	1 cut(s)	100
BisI	GCNGC	7 cut(s)	100, 103, 154, 270, 407, 417, 420
BlpI	GCTNAGC	1 cut(s)	357
BlsI	GCNGC	7 cut(s)	101, 104, 155, 271, 408, 418, 421
Bme1390I	CCNGG	2 cut(s)	137, 138
BmeT110I	CYCGRG	2 cut(s)	113, 136
BmiI	GGNNCC	2 cut(s)	246, 321
BmrFI	CCNGG	2 cut(s)	137, 138
BmsI	GCATC	4 cut(s)	114, 343, 408, 418
BpiI	GAAGAC	2 cut(s)	51, 99
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu1102I	GCTNAGC	1 cut(s)	357
BpuEI	CTTGAG	1 cut(s)	277
BpuMI	CCSGG	2 cut(s)	137, 138
Bsa29I	ATCGAT	1 cut(s)	465
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	3 cut(s)	66, 136, 315
BseCI	ATCGAT	1 cut(s)	465
BseDI	CCNNGG	3 cut(s)	66, 136, 315
BseGI	GGATG	1 cut(s)	397
BseMII	CTCAG	3 cut(s)	60, 348, 387
BseSI	GKGCMC	1 cut(s)	143
BseXI	GCAGC	7 cut(s)	86, 114, 140, 256, 403, 406, 418
BshNI	GGYRCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	465
BsiHKAI	GWGCWC	2 cut(s)	363, 436
BsiHKCI	CYCGRG	2 cut(s)	113, 136
BsiSI	CCGG	1 cut(s)	137
BsmI	GAATGC	1 cut(s)	215
BsoBI	CYCGRG	2 cut(s)	113, 136
Bsp1286I	GDGCHC	3 cut(s)	143, 363, 436
Bsp143I	GATC	4 cut(s)	70, 244, 462, 466
Bsp1720I	GCTNAGC	1 cut(s)	357
Bsp19I	CCATGG	1 cut(s)	315
BspCNI	CTCAG	3 cut(s)	59, 349, 386
BspDI	ATCGAT	1 cut(s)	465
BspLI	GGNNCC	2 cut(s)	246, 321
BspMAI	CTGCAG	1 cut(s)	104
BspPI	GGATC	3 cut(s)	78, 239, 252
BspT107I	GGYRCC	1 cut(s)	319
BssECI	CCNNGG	3 cut(s)	66, 136, 315
BssMI	GATC	4 cut(s)	70, 244, 462, 466
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	179
Bst6I	CTCTTC	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	5
BstAPI	GCANNNNNTGC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	3 cut(s)	46, 357, 373
BstDSI	CCRYGG	2 cut(s)	66, 315
BstF5I	GGATG	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	399
BstKTI	GATC	4 cut(s)	73, 247, 465, 469
BstMBI	GATC	4 cut(s)	70, 244, 462, 466
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 108, 403, 440
BstSCI	CCNGG	2 cut(s)	135, 136
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	143
BstV1I	GCAGC	7 cut(s)	86, 114, 140, 256, 403, 406, 418
BstV2I	GAAGAC	2 cut(s)	51, 99
BstX2I	RGATCY	2 cut(s)	70, 244
BstXI	CCANNNNNNTGG	1 cut(s)	222
BstYI	RGATCY	2 cut(s)	70, 244
Bsu15I	ATCGAT	1 cut(s)	465
BsuTUI	ATCGAT	1 cut(s)	465
BtgI	CCRYGG	2 cut(s)	66, 315
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	108
CfoI	GCGC	1 cut(s)	399
Cfr9I	CCCGGG	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	465
CviAII	CATG	2 cut(s)	316, 403
CviJI	RGCY	7 cut(s)	50, 118, 153, 262, 269, 434, 477
CviKI_1	RGCY	7 cut(s)	50, 118, 153, 262, 269, 434, 477
DdeI	CTNAG	3 cut(s)	46, 357, 373
DpnI	GATC	4 cut(s)	72, 246, 464, 468
DpnII	GATC	4 cut(s)	70, 244, 462, 466
Eam1104I	CTCTTC	1 cut(s)	25
EarI	CTCTTC	1 cut(s)	25
Ecl136II	GAGCTC	1 cut(s)	434
Eco130I	CCWWGG	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	260
Eco88I	CYCGRG	2 cut(s)	113, 136
EcoICRI	GAGCTC	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	315
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	2 cut(s)	319, 406
FatI	CATG	2 cut(s)	315, 402
FauNDI	CATATG	1 cut(s)	340
Fnu4HI	GCNGC	7 cut(s)	100, 103, 154, 270, 407, 417, 420
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	436
Fsp4HI	GCNGC	7 cut(s)	100, 103, 154, 270, 407, 417, 420
FspBI	CTAG	3 cut(s)	266, 426, 478
GlaI	GCGC	1 cut(s)	398
GluI	GCNGC	7 cut(s)	100, 103, 154, 270, 407, 417, 420
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	399
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	319, 406
Hin6I	GCGC	1 cut(s)	397
HinP1I	GCGC	1 cut(s)	397
HinfI	GANTC	3 cut(s)	83, 365, 380
HpaII	CCGG	1 cut(s)	137
Hpy188I	TCNGA	2 cut(s)	376, 385
Hpy188III	TCNNGA	2 cut(s)	77, 300
Hpy99I	CGWCG	2 cut(s)	83, 134
HpyAV	CCTTC	2 cut(s)	235, 444
HpyCH4III	ACNGT	1 cut(s)	179
HpyCH4V	TGCA	3 cut(s)	102, 156, 406
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 108, 403, 440
HpyF3I	CTNAG	3 cut(s)	46, 357, 373
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	319, 406
HspAI	GCGC	1 cut(s)	397
Kzo9I	GATC	4 cut(s)	70, 244, 462, 466
LmnI	GCTCC	2 cut(s)	19, 55
LpnPI	CCDG	5 cut(s)	150, 163, 251, 261, 458
Lsp1109I	GCAGC	7 cut(s)	86, 114, 140, 256, 403, 406, 418
LweI	GCATC	4 cut(s)	114, 343, 408, 418
MaeI	CTAG	3 cut(s)	266, 426, 478
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	4 cut(s)	72, 246, 464, 468
MboI	GATC	4 cut(s)	70, 244, 462, 466
MboII	GAAGA	8 cut(s)	12, 15, 51, 65, 104, 164, 298, 303
MflI	RGATCY	2 cut(s)	70, 244
MhlI	GDGCHC	3 cut(s)	143, 363, 436
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	2 cut(s)	77, 374
MnlI	CCTC	4 cut(s)	28, 73, 122, 337
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	137, 138
Mva1269I	GAATGC	1 cut(s)	215
MwoI	GCNNNNNNNGC	4 cut(s)	11, 108, 403, 440
NciI	CCSGG	2 cut(s)	137, 138
NcoI	CCATGG	1 cut(s)	315
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	4 cut(s)	70, 244, 462, 466
NlaIII	CATG	2 cut(s)	319, 406
NlaIV	GGNNCC	2 cut(s)	246, 321
NmuCI	GTSAC	1 cut(s)	192
PaeR7I	CTCGAG	1 cut(s)	113
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	1 cut(s)	365
PkrI	GCNGC	7 cut(s)	101, 104, 155, 271, 408, 418, 421
PleI	GAGTC	2 cut(s)	77, 374
PpsI	GAGTC	2 cut(s)	77, 374
Psp124BI	GAGCTC	1 cut(s)	436
PspN4I	GGNNCC	2 cut(s)	246, 321
PspXI	VCTCGAGB	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	104
PstNI	CAGNNNCTG	1 cut(s)	108
PsuI	RGATCY	2 cut(s)	70, 244
PvuII	CAGCTG	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	7 cut(s)	100, 103, 154, 270, 407, 417, 420
Sau3AI	GATC	4 cut(s)	70, 244, 462, 466
SchI	GAGTC	2 cut(s)	77, 374
ScrFI	CCNGG	2 cut(s)	137, 138
SduI	GDGCHC	3 cut(s)	143, 363, 436
SetI	ASST	6 cut(s)	52, 155, 264, 271, 299, 436
SfaNI	GCATC	4 cut(s)	114, 343, 408, 418
SfcI	CTRYAG	1 cut(s)	100
Sfr274I	CTCGAG	1 cut(s)	113
SlaI	CTCGAG	1 cut(s)	113
SmaI	CCCGGG	1 cut(s)	138
SmiMI	CAYNNNNRTG	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	113, 292
SmoI	CTYRAG	2 cut(s)	113, 292
Sse9I	AATT	1 cut(s)	216
SspMI	CTAG	3 cut(s)	266, 426, 478
SstI	GAGCTC	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	135, 136
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	179
TaqI	TCGA	3 cut(s)	78, 114, 465
TasI	AATT	1 cut(s)	216
TfiI	GAWTC	1 cut(s)	365
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	182
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	7 cut(s)	99, 102, 153, 269, 406, 416, 419
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	105, 327
TspGWI	ACGGA	1 cut(s)	83
TspMI	CCCGGG	1 cut(s)	136
TspRI	CASTG	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	113
XmaI	CCCGGG	1 cut(s)	136
XspI	CTAG	3 cut(s)	266, 426, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.