pycom16g16490

ERG2 and Sigma1 receptor like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0011384
Physical Location & Seq
Reverse (-)
12376793 .. 12378152
1360 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1146 bp
ATGTCAACGAAACAAAGCCTTTCTCCTAAACCCCGAGACGCTCAAGCTGCCATGAAATCCGCCCTCTCATCGTCTCCGTCGACGACAACGACATCATCCTCAGTGAAATCGAGCACCACCACCGCCATGGATGACGACGGATCTGAAAACCGCGACAGCTGCTACTACCCAGGATGCCGAAAAGATGCCAACTGCAACTGCGAAATGTGCTTGGCCAGTATCAATGCCACTCTCGATCTCATGCCCTTCAGCATCCAGAAAACCTCGCTCACCAAGTTCTCATCTTCAAGGCCCAAGAACAACCCGAGTGTCAAACGCACTCCCATCGCTTTCGAAGCTTCGATTTTGTCCACACCCACTTCGGGCACTCCTCCGATTCCTATGTCTCCGGAGCTTAAACCGGCTGCAAGATTGAAATCGAAGGAGAAGGTTAAGAATAGGGAGAGAAAAAGGGGTTTTGGGTGTGAAATTTGGAGATTGATTTTGGGTTTAAGCTTGGTTTATGTGGGGTTTTCTAATATGGTTTCAGGGGCTTTAAAACCTATTCTCTTGCCGGAGATTGTGAGAAATGTTGGTGAAAAATCTTGGGTTGTGGATGATTTGAATGGCAGGCTGAGGTTCTTGCAGAAAGAGATGCAGGGTCTTGTTCCGGGCAGAGTTTCGAATTGCAGCTGTCCTAATTCTATTTGGGATATTAGTCAGGATGGTTTGCTTCTGAGCTCACATTGCACGTTGTACAAATCTGCAATCGAGGAGGTGAGAATATGGGGATGGCCTTTGCAGACAGCCGGGTTGCTCACGAGTGGGTTTTCTTCCCGGTCTTTCACAATCTTATCCGGCAGAGTCACAGAGTGGTCGGATGGAAAGGTTGGCAGCTATGTGATTCGGGAGCCAAACACTTCCTGGGTGCAGAGAAGTTGGGGTGCCTCAGCTGTGCGGCTAGATCCGAATACATGGATTCTTGAGTATCGGTGGAGCACGACATTTGATAACCAAAGATTGGTTTCAGCAGCACTAGCCTTCTTTAAGAATATGATCTCCAGAAAGCTTGGAAAGATGCAGCAGAAGTTTTGGATCTTATCTACTTTTGGCAACAACCAGTACGTTGAAAGTTCTGCAAACTACAACATCAAAATCCCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ERG2_Sigma1R

Protein Analysis

382

Amino Acids

42.26

Weight (kDa)

9.62

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011384)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G05440
fragaria_vesca FvH4_4g16270
malus_domestica MD13G1194900.v1.1 MD16G1195700.v1.1
prunus_persica Prupe.1G015700_v2.0.a1
pyrus_communis pycom03g13620 pycom07g11900 pycom13g16710 pycom16g16490
rosa_chinensis RchiOBHm_Chr4g0415861
rosa_laevigata RLG00000008033
rosa_multiflora Rmu_co8517385.1_g000002 Rmu_sc0002438.1_g000006
rosa_roxburghii Rroxscaffold_5G00359720
rosa_rugosa Rorug04G0137000
rosa_samantha Rh4AG198900 Rh4BG196900 Rh4CG209800 Rh4DG196800
rosa_wichuraiana Rw4G016850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 923
AccB7I CCANNNNNTGG 1 cut(s) 1000
AccI GTMKAC 1 cut(s) 80
AccII CGCG 1 cut(s) 153
AccIII TCCGGA 1 cut(s) 388
AciI CCGC 4 cut(s) 60, 123, 151, 937
AclWI GGATC 3 cut(s) 148, 938, 1082
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 468
AcuI CTGAAG 1 cut(s) 232
AdeI CACNNNGTG 1 cut(s) 852
AfaI GTAC 2 cut(s) 737, 1103
AfiI CCNNNNNNNGG 2 cut(s) 362, 1000
AgsI TTSAA 4 cut(s) 288, 415, 604, 1109
AjnI CCWGG 2 cut(s) 169, 902
Alw21I GWGCWC 3 cut(s) 116, 722, 980
Alw26I GTCTC 3 cut(s) 30, 78, 390
AlwI GGATC 3 cut(s) 148, 938, 1082
Ama87I CYCGRG 2 cut(s) 33, 304
Aor13HI TCCGGA 1 cut(s) 388
AoxI GGCC 3 cut(s) 213, 290, 773
ApeKI GCWGC 7 cut(s) 47, 159, 404, 669, 873, 1010, 1060
ApoI RAATTY 1 cut(s) 468
AspS9I GGNCC 1 cut(s) 291
AsuC2I CCSGG 3 cut(s) 651, 790, 817
AsuHPI GGTGA 3 cut(s) 262, 587, 769
AsuII TTCGAA 2 cut(s) 333, 662
AvaI CYCGRG 2 cut(s) 33, 304
BaeGI GKGCMC 1 cut(s) 368
BalI TGGCCA 1 cut(s) 215
BanI GGYRCC 1 cut(s) 923
BanII GRGCYC 1 cut(s) 722
BauI CACGAG 1 cut(s) 799
Bbv12I GWGCWC 3 cut(s) 116, 722, 980
BbvCI CCTCAGC 2 cut(s) 614, 928
BbvI GCAGC 7 cut(s) 34, 146, 391, 681, 885, 1022, 1072
BccI CCATC 4 cut(s) 332, 698, 765, 854
BcgI CGANNNNNNTGC 2 cut(s) 307, 341
BciT130I CCWGG 2 cut(s) 171, 904
BcnI CCSGG 3 cut(s) 651, 790, 817
BcoDI GTCTC 3 cut(s) 30, 78, 390
BfaI CTAG 2 cut(s) 941, 1016
BisI GCNGC 8 cut(s) 48, 160, 405, 670, 874, 938, 1011, 1061
BlsI GCNGC 8 cut(s) 49, 161, 406, 671, 875, 939, 1012, 1062
Bme1390I CCNGG 5 cut(s) 171, 651, 790, 817, 904
BmeT110I CYCGRG 2 cut(s) 33, 304
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 891, 925
BmrFI CCNGG 5 cut(s) 171, 651, 790, 817, 904
BmsI GCATC 5 cut(s) 164, 175, 261, 624, 1047
BpmI CTGGAG 1 cut(s) 1024
Bpu10I CCTNAGC 2 cut(s) 614, 928
Bpu14I TTCGAA 2 cut(s) 333, 662
BpuEI CTTGAG 2 cut(s) 27, 983
BpuMI CCSGG 3 cut(s) 651, 790, 817
BsaBI GATNNNNATC 1 cut(s) 415
BsaJI CCNNGG 3 cut(s) 126, 169, 903
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 1000
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 2 cut(s) 216, 1099
Bse3DI GCAATG 1 cut(s) 724
Bse8I GATNNNNATC 1 cut(s) 415
BseAI TCCGGA 1 cut(s) 388
BseBI CCWGG 2 cut(s) 171, 904
BseDI CCNNGG 3 cut(s) 126, 169, 903
BseGI GGATG 8 cut(s) 95, 136, 179, 252, 601, 709, 776, 865
BseJI GATNNNNATC 1 cut(s) 415
BseLI CCNNNNNNNGG 2 cut(s) 362, 1000
BseMI GCAATG 1 cut(s) 724
BseMII CTCAG 4 cut(s) 114, 605, 707, 942
BseNI ACTGG 2 cut(s) 216, 1099
BseRI GAGGAG 2 cut(s) 360, 767
BseSI GKGCMC 1 cut(s) 368
BseXI GCAGC 7 cut(s) 34, 146, 391, 681, 885, 1022, 1072
BsgI GTGCAG 1 cut(s) 929
Bsh1236I CGCG 1 cut(s) 153
BshFI GGCC 3 cut(s) 215, 292, 775
BshNI GGYRCC 1 cut(s) 923
BsiHKAI GWGCWC 3 cut(s) 116, 722, 980
BsiHKCI CYCGRG 2 cut(s) 33, 304
BsiSI CCGG 7 cut(s) 389, 401, 554, 650, 789, 817, 837
BslI CCNNNNNNNGG 2 cut(s) 362, 1000
BsmAI GTCTC 3 cut(s) 30, 78, 390
BsmBI CGTCTC 2 cut(s) 30, 78
BsnI GGCC 3 cut(s) 215, 292, 775
BsoBI CYCGRG 2 cut(s) 33, 304
Bsp119I TTCGAA 2 cut(s) 333, 662
Bsp1286I GDGCHC 4 cut(s) 116, 368, 722, 980
Bsp13I TCCGGA 1 cut(s) 388
Bsp1407I TGTACA 1 cut(s) 735
Bsp143I GATC 5 cut(s) 140, 235, 943, 1035, 1074
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 4 cut(s) 60, 123, 151, 937
BspANI GGCC 3 cut(s) 215, 292, 775
BspCNI CTCAG 4 cut(s) 113, 606, 708, 941
BspEI TCCGGA 1 cut(s) 388
BspFNI CGCG 1 cut(s) 153
BspLI GGNNCC 2 cut(s) 891, 925
BspPI GGATC 3 cut(s) 148, 938, 1082
BspT104I TTCGAA 2 cut(s) 333, 662
BspT107I GGYRCC 1 cut(s) 923
BsrDI GCAATG 1 cut(s) 724
BsrFI RCCGGY 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 735
BsrI ACTGG 2 cut(s) 216, 1099
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 3 cut(s) 126, 169, 903
BssMI GATC 5 cut(s) 140, 235, 943, 1035, 1074
BssSI CACGAG 1 cut(s) 799
BssT1I CCWWGG 1 cut(s) 126
Bst2BI CACGAG 1 cut(s) 799
Bst2UI CCWGG 2 cut(s) 171, 904
BstAUI TGTACA 1 cut(s) 735
BstBI TTCGAA 2 cut(s) 333, 662
BstC8I GCNNGC 1 cut(s) 611
BstDEI CTNAG 4 cut(s) 100, 614, 716, 928
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 8 cut(s) 95, 136, 179, 252, 601, 709, 776, 865
BstFNI CGCG 1 cut(s) 153
BstKTI GATC 5 cut(s) 143, 238, 946, 1038, 1077
BstMAI GTCTC 3 cut(s) 30, 78, 390
BstMBI GATC 5 cut(s) 140, 235, 943, 1035, 1074
BstMWI GCNNNNNNNGC 6 cut(s) 47, 159, 207, 335, 726, 1016
BstNI CCWGG 2 cut(s) 171, 904
BstSCI CCNGG 5 cut(s) 169, 649, 788, 815, 902
BstSLI GKGCMC 1 cut(s) 368
BstUI CGCG 1 cut(s) 153
BstV1I GCAGC 7 cut(s) 34, 146, 391, 681, 885, 1022, 1072
BstX2I RGATCY 3 cut(s) 140, 943, 1074
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 3 cut(s) 140, 943, 1074
BsuRI GGCC 3 cut(s) 215, 292, 775
BtgI CCRYGG 1 cut(s) 126
BtgZI GCGATG 1 cut(s) 310
BtsCI GGATG 8 cut(s) 95, 136, 179, 252, 601, 709, 776, 865
BtsIMutI CAGTG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 611
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 291
CseI GACGC 1 cut(s) 47
Csp6I GTAC 2 cut(s) 736, 1102
CviAII CATG 4 cut(s) 52, 127, 241, 954
CviQI GTAC 2 cut(s) 736, 1102
DdeI CTNAG 4 cut(s) 100, 614, 716, 928
DpnI GATC 5 cut(s) 142, 237, 945, 1037, 1076
DpnII GATC 5 cut(s) 140, 235, 943, 1035, 1074
DraI TTTAAA 1 cut(s) 537
DraIII CACNNNGTG 1 cut(s) 852
EaeI YGGCCR 1 cut(s) 213
EciI GGCGGA 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 126
Eco24I GRGCYC 1 cut(s) 722
Eco53kI GAGCTC 1 cut(s) 720
Eco57I CTGAAG 1 cut(s) 232
Eco88I CYCGRG 2 cut(s) 33, 304
EcoICRI GAGCTC 1 cut(s) 720
EcoRII CCWGG 2 cut(s) 169, 902
EcoT14I CCWWGG 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 722
ErhI CCWWGG 1 cut(s) 126
Esp3I CGTCTC 2 cut(s) 30, 78
FaeI CATG 4 cut(s) 55, 130, 244, 957
FatI CATG 4 cut(s) 51, 126, 240, 953
FblI GTMKAC 1 cut(s) 80
Fnu4HI GCNGC 8 cut(s) 48, 160, 405, 670, 874, 938, 1011, 1061
FokI GGATG 8 cut(s) 82, 143, 186, 239, 608, 716, 783, 872
FriOI GRGCYC 1 cut(s) 722
Fsp4HI GCNGC 8 cut(s) 48, 160, 405, 670, 874, 938, 1011, 1061
FspBI CTAG 2 cut(s) 941, 1016
GluI GCNGC 8 cut(s) 48, 160, 405, 670, 874, 938, 1011, 1061
GsuI CTGGAG 1 cut(s) 1024
HaeIII GGCC 3 cut(s) 215, 292, 775
HapII CCGG 7 cut(s) 389, 401, 554, 650, 789, 817, 837
HgaI GACGC 1 cut(s) 47
Hin1II CATG 4 cut(s) 55, 130, 244, 957
HincII GTYRAC 2 cut(s) 6, 81
HindII GTYRAC 2 cut(s) 6, 81
HindIII AAGCTT 3 cut(s) 336, 493, 1046
HinfI GANTC 4 cut(s) 376, 843, 883, 958
HpaII CCGG 7 cut(s) 389, 401, 554, 650, 789, 817, 837
HphI GGTGA 3 cut(s) 262, 587, 769
Hpy166II GTNNAC 3 cut(s) 6, 81, 351
Hpy188I TCNGA 5 cut(s) 145, 375, 717, 859, 948
Hpy188III TCNNGA 8 cut(s) 233, 256, 389, 701, 799, 887, 962, 1041
Hpy8I GTNNAC 3 cut(s) 6, 81, 351
Hpy99I CGWCG 3 cut(s) 82, 85, 140
HpyAV CCTTC 4 cut(s) 256, 415, 421, 1030
HpyCH4IV ACGT 2 cut(s) 731, 1104
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 159, 207, 335, 726, 1016
HpyF3I CTNAG 4 cut(s) 100, 614, 716, 928
HpySE526I ACGT 2 cut(s) 731, 1104
Hsp92II CATG 4 cut(s) 55, 130, 244, 957
Kpn2I TCCGGA 1 cut(s) 388
Kzo9I GATC 5 cut(s) 140, 235, 943, 1035, 1074
LmnI GCTCC 3 cut(s) 391, 889, 975
Lsp1109I GCAGC 7 cut(s) 34, 146, 391, 681, 885, 1022, 1072
LweI GCATC 5 cut(s) 164, 175, 261, 624, 1047
MaeI CTAG 2 cut(s) 941, 1016
MaeII ACGT 2 cut(s) 731, 1104
MaeIII GTNAC 1 cut(s) 844
MalI GATC 5 cut(s) 142, 237, 945, 1037, 1076
MboI GATC 5 cut(s) 140, 235, 943, 1035, 1074
MboII GAAGA 2 cut(s) 276, 804
MflI RGATCY 3 cut(s) 140, 943, 1074
MhlI GDGCHC 4 cut(s) 116, 368, 722, 980
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 3 cut(s) 468, 664, 679
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 1 cut(s) 852
MmeI TCCRAC 1 cut(s) 837
MnlI CCTC 8 cut(s) 74, 109, 274, 381, 609, 745, 748, 937
Mox20I TGGCCA 1 cut(s) 215
MroI TCCGGA 1 cut(s) 388
MscI TGGCCA 1 cut(s) 215
MseI TTAA 5 cut(s) 396, 432, 491, 536, 1026
MslI CAYNNNNRTG 1 cut(s) 125
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 3 cut(s) 159, 672, 932
MspI CCGG 7 cut(s) 389, 401, 554, 650, 789, 817, 837
MspR9I CCNGG 5 cut(s) 171, 651, 790, 817, 904
MvaI CCWGG 2 cut(s) 171, 904
MvnI CGCG 1 cut(s) 153
MwoI GCNNNNNNNGC 6 cut(s) 47, 159, 207, 335, 726, 1016
NciI CCSGG 3 cut(s) 651, 790, 817
NcoI CCATGG 1 cut(s) 126
NdeII GATC 5 cut(s) 140, 235, 943, 1035, 1074
NlaIII CATG 4 cut(s) 55, 130, 244, 957
NlaIV GGNNCC 2 cut(s) 891, 925
NmuCI GTSAC 1 cut(s) 844
NspV TTCGAA 2 cut(s) 333, 662
PcsI WCGNNNNNNNCGW 2 cut(s) 77, 86
PfeI GAWTC 3 cut(s) 376, 883, 958
PflMI CCANNNNNTGG 1 cut(s) 1000
PkrI GCNGC 8 cut(s) 49, 161, 406, 671, 875, 939, 1012, 1062
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
Psp124BI GAGCTC 1 cut(s) 722
Psp6I CCWGG 2 cut(s) 169, 902
PspGI CCWGG 2 cut(s) 169, 902
PspN4I GGNNCC 2 cut(s) 891, 925
PspPI GGNCC 1 cut(s) 291
PsuI RGATCY 3 cut(s) 140, 943, 1074
PvuII CAGCTG 3 cut(s) 159, 672, 932
RsaI GTAC 2 cut(s) 737, 1103
RsaNI GTAC 2 cut(s) 736, 1102
RseI CAYNNNNRTG 1 cut(s) 125
SacI GAGCTC 1 cut(s) 722
SalI GTCGAC 1 cut(s) 79
SaqAI TTAA 5 cut(s) 396, 432, 491, 536, 1026
SatI GCNGC 8 cut(s) 48, 160, 405, 670, 874, 938, 1011, 1061
Sau3AI GATC 5 cut(s) 140, 235, 943, 1035, 1074
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 852
ScrFI CCNGG 5 cut(s) 171, 651, 790, 817, 904
SduI GDGCHC 4 cut(s) 116, 368, 722, 980
SfaNI GCATC 5 cut(s) 164, 175, 261, 624, 1047
SfuI TTCGAA 2 cut(s) 333, 662
SgrDI CGTCGACG 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 42, 962
SmoI CTYRAG 2 cut(s) 42, 962
Sse9I AATT 3 cut(s) 468, 664, 679
SsiI CCGC 4 cut(s) 60, 123, 151, 937
SspMI CTAG 2 cut(s) 941, 1016
SstI GAGCTC 1 cut(s) 722
StyD4I CCNGG 5 cut(s) 169, 649, 788, 815, 902
StyI CCWWGG 1 cut(s) 126
TaiI ACGT 2 cut(s) 734, 1107
TaqI TCGA 8 cut(s) 80, 110, 234, 333, 341, 419, 662, 750
TasI AATT 3 cut(s) 468, 664, 679
TatI WGTACW 1 cut(s) 735
TauI GCSGC 1 cut(s) 940
TfiI GAWTC 3 cut(s) 376, 883, 958
Tru1I TTAA 5 cut(s) 396, 432, 491, 536, 1026
Tru9I TTAA 5 cut(s) 396, 432, 491, 536, 1026
TscAI CASTG 1 cut(s) 108
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 7 cut(s) 47, 159, 404, 669, 873, 1010, 1060
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 1 cut(s) 68
TspGWI ACGGA 2 cut(s) 66, 153
TspRI CASTG 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 1000
XapI RAATTY 1 cut(s) 468
XcmI CCANNNNNNNNNTGG 2 cut(s) 124, 900
XmiI GTMKAC 1 cut(s) 80
XspI CTAG 2 cut(s) 941, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.