Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0006489

Physical Location & Seq

Genomic Coordinates Reverse (-)

12446547 .. 12447874

Gene Structure 1328 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGAGCCCCATACTTCTCCCCACCAAACAAATCAAAACACTCAAATCCCAGTTCAGATATACCACAGCTTCCCAATCACTTCCCACACAAACCCAAAAAAACTTATATTCCAATGGCACAAAAGTTTGAGATGTCTCTAGTCCTTGTTCTAGTGACCATGTTCTTGGCAAGGGCAGCAGCCCAGTCTAGTTGCACAAACGTGATCATCAGCATGTCACCCTGCCTCAATTACATTACTGGCAACTCCTCCACCCCTTCTTCCGGGTGCTGCTCGCAGCTCGCCAGCGTTGTCGCTTCCTCCCCACAGTGTTTGTGTGAGGTCCTTAATGGCGGTGGATCATCGCTAGGGATCAATGTGAACCAGACTCAGGCTCTGGCATTGCCTGGTGCTTGCAATGTCCAGACTCCACCACTCAGCAAGTGCAATGCTGCTTCTCCGGCTGGCTCTCCAACAGGAGCAGCAGACTCTCCTAATGAAGGAACCGGTTCAAAAACTGTACCATCGACTCAAGGCGGCATGTCGGACGGGTACTCCATCAAGATGTCCACTCCGACTCAACTCTTTCTTCTCTTGGCTACAGCATACGCTACCTTCACAATGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

203

Amino Acids

20.9

Weight (kDa)

8.76

Isoelectric Point (pI)

58.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	50 - 142	2.2e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	65 - 142	1.4e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22600 AT4G14815
fragaria_vesca	FvH4_4g16110 FvH4_4g16110
malus_domestica	MD03G1261700.v1.1 MD11G1282100.v1.1 MD11G1282400.v1.1 MD13G1196200.v1.1 MD16G1196700.v1.1
prunus_persica	Prupe.1G016900_v2.0.a1 Prupe.8G238000_v2.0.a1
pyrus_communis	pycom11g25010 pycom13g16830 pycom16g16550
rosa_laevigata	RLG00000008054
rosa_multiflora	Rmu_sc0001194.1_g000008 Rmu_sc0004599.1_g000012 Rmu_sc0023626.1_g000001
rosa_roxburghii	Rroxscaffold_5G00359460
rosa_rugosa	Rorug04G0136100 Rorug04G0136100
rosa_samantha	Rh4AG196700 Rh4BG195300 Rh4CG207500 Rh4DG194600
rosa_wichuraiana	Rw4G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	333, 516
AclWI	GGATC	2 cut(s)	346, 359
AdeI	CACNNNGTG	1 cut(s)	603
AfaI	GTAC	2 cut(s)	501, 533
AfiI	CCNNNNNNNGG	3 cut(s)	263, 370, 479
AgeI	ACCGGT	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	492
AjnI	CCWGG	1 cut(s)	385
AleI	CACNNNNGTG	1 cut(s)	200
AluBI	AGCT	2 cut(s)	70, 280
AluI	AGCT	2 cut(s)	70, 280
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	2 cut(s)	346, 359
AlwNI	CAGNNNCTG	1 cut(s)	376
ApeKI	GCWGC	6 cut(s)	176, 179, 270, 277, 431, 461
AsiGI	ACCGGT	1 cut(s)	485
Asp700I	GAANNNNTTC	1 cut(s)	487
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	10
BbvI	GCAGC	6 cut(s)	188, 191, 257, 289, 418, 473
BccI	CCATC	2 cut(s)	511, 545
BciT130I	CCWGG	1 cut(s)	387
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	141
BfaI	CTAG	4 cut(s)	140, 152, 189, 347
BfmI	CTRYAG	1 cut(s)	579
BisI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
BlsI	GCNGC	7 cut(s)	178, 181, 272, 279, 433, 463, 518
Bme1390I	CCNGG	2 cut(s)	265, 387
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	2 cut(s)	265, 387
BmrI	ACTGGG	2 cut(s)	45, 178
BmuI	ACTGGG	2 cut(s)	45, 178
BpuEI	CTTGAG	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	265
BsaWI	WCCGGW	1 cut(s)	485
BsaXI	ACNNNNNCTCC	2 cut(s)	518, 548
Bsc4I	CCNNNNNNNGG	3 cut(s)	263, 370, 479
Bse118I	RCCGGY	1 cut(s)	485
Bse1I	ACTGG	3 cut(s)	51, 184, 244
Bse3DI	GCAATG	3 cut(s)	380, 403, 433
BseBI	CCWGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	3 cut(s)	263, 370, 479
BseMI	GCAATG	3 cut(s)	380, 403, 433
BseMII	CTCAG	2 cut(s)	383, 430
BseNI	ACTGG	3 cut(s)	51, 184, 244
BseRI	GAGGAG	1 cut(s)	238
BseXI	GCAGC	6 cut(s)	188, 191, 257, 289, 418, 473
BshTI	ACCGGT	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	264, 440, 486
BslI	CCNNNNNNNGG	3 cut(s)	263, 370, 479
BsmAI	GTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	204, 338, 351
BspACI	CCGC	2 cut(s)	333, 516
BspCNI	CTCAG	2 cut(s)	382, 429
BspLI	GGNNCC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	346, 359
BsrDI	GCAATG	3 cut(s)	380, 403, 433
BsrFI	RCCGGY	1 cut(s)	485
BsrI	ACTGG	3 cut(s)	51, 184, 244
BssAI	RCCGGY	1 cut(s)	485
BssMI	GATC	3 cut(s)	204, 338, 351
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	309, 499
BstC8I	GCNNGC	5 cut(s)	275, 282, 286, 394, 445
BstDEI	CTNAG	2 cut(s)	369, 416
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstKTI	GATC	3 cut(s)	207, 341, 354
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	3 cut(s)	204, 338, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 440
BstNI	CCWGG	1 cut(s)	387
BstNSI	RCATGY	2 cut(s)	217, 523
BstSCI	CCNGG	2 cut(s)	263, 385
BstSFI	CTRYAG	1 cut(s)	579
BstV1I	GCAGC	6 cut(s)	188, 191, 257, 289, 418, 473
BstXI	CCANNNNNNTGG	1 cut(s)	166
BtgZI	GCGATG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	5 cut(s)	275, 282, 286, 394, 445
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	322
Csp6I	GTAC	2 cut(s)	500, 532
CspAI	ACCGGT	1 cut(s)	485
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	3 cut(s)	160, 214, 520
CviJI	RGCY	8 cut(s)	8, 70, 182, 280, 374, 443, 447, 578
CviKI_1	RGCY	8 cut(s)	8, 70, 182, 280, 374, 443, 447, 578
CviQI	GTAC	2 cut(s)	500, 532
DdeI	CTNAG	2 cut(s)	369, 416
DpnI	GATC	3 cut(s)	206, 340, 353
DpnII	GATC	3 cut(s)	204, 338, 351
DraIII	CACNNNGTG	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	10
FaeI	CATG	3 cut(s)	163, 217, 523
FaiI	YATR	7 cut(s)	13, 62, 108, 161, 215, 521, 586
FatI	CATG	3 cut(s)	159, 213, 519
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
FspBI	CTAG	4 cut(s)	140, 152, 189, 347
GluI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
HapII	CCGG	3 cut(s)	264, 440, 486
Hin1II	CATG	3 cut(s)	163, 217, 523
HinfI	GANTC	5 cut(s)	367, 406, 467, 508, 556
HpaII	CCGG	3 cut(s)	264, 440, 486
HphI	GGTGA	1 cut(s)	210
Hpy166II	GTNNAC	2 cut(s)	361, 549
Hpy188I	TCNGA	3 cut(s)	58, 526, 555
Hpy188III	TCNNGA	2 cut(s)	403, 541
Hpy8I	GTNNAC	2 cut(s)	361, 549
HpyAV	CCTTC	3 cut(s)	267, 473, 604
HpyCH4III	ACNGT	2 cut(s)	309, 499
HpyCH4IV	ACGT	1 cut(s)	201
HpyCH4V	TGCA	3 cut(s)	195, 396, 426
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 440
HpyF3I	CTNAG	2 cut(s)	369, 416
HpySE526I	ACGT	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	163, 217, 523
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	204, 338, 351
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	6 cut(s)	188, 191, 257, 289, 418, 473
MaeI	CTAG	4 cut(s)	140, 152, 189, 347
MaeII	ACGT	1 cut(s)	201
MaeIII	GTNAC	2 cut(s)	154, 216
MalI	GATC	3 cut(s)	206, 340, 353
MboI	GATC	3 cut(s)	204, 338, 351
MboII	GAAGA	2 cut(s)	252, 560
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	229
MlyI	GAGTC	5 cut(s)	361, 400, 461, 502, 550
MmeI	TCCRAC	3 cut(s)	476, 504, 578
MnlI	CCTC	4 cut(s)	236, 259, 310, 313
MroXI	GAANNNNTTC	1 cut(s)	487
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	3 cut(s)	200, 212, 542
MspI	CCGG	3 cut(s)	264, 440, 486
MspR9I	CCNGG	2 cut(s)	265, 387
MvaI	CCWGG	1 cut(s)	387
MwoI	GCNNNNNNNGC	2 cut(s)	176, 440
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	204, 338, 351
NlaIII	CATG	3 cut(s)	163, 217, 523
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	2 cut(s)	154, 216
NspI	RCATGY	2 cut(s)	217, 523
OliI	CACNNNNGTG	1 cut(s)	200
PdmI	GAANNNNTTC	1 cut(s)	487
PinAI	ACCGGT	1 cut(s)	485
PkrI	GCNGC	7 cut(s)	178, 181, 272, 279, 433, 463, 518
PleI	GAGTC	5 cut(s)	361, 400, 461, 502, 550
PpsI	GAGTC	5 cut(s)	361, 400, 461, 502, 550
PpuMI	RGGWCCY	1 cut(s)	322
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	1 cut(s)	322
PspPPI	RGGWCCY	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	501, 533
RsaNI	GTAC	2 cut(s)	500, 532
RseI	CAYNNNNRTG	3 cut(s)	200, 212, 542
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	7 cut(s)	177, 180, 271, 278, 432, 462, 517
Sau3AI	GATC	3 cut(s)	204, 338, 351
Sau96I	GGNCC	1 cut(s)	322
SchI	GAGTC	5 cut(s)	361, 400, 461, 502, 550
ScrFI	CCNGG	2 cut(s)	265, 387
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	5 cut(s)	72, 204, 282, 324, 596
SfcI	CTRYAG	1 cut(s)	579
SinI	GGWCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	3 cut(s)	200, 212, 542
SmlI	CTYRAG	1 cut(s)	510
SmoI	CTYRAG	1 cut(s)	510
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	2 cut(s)	333, 516
SspMI	CTAG	4 cut(s)	140, 152, 189, 347
StyD4I	CCNGG	2 cut(s)	263, 385
TaaI	ACNGT	2 cut(s)	309, 499
TaiI	ACGT	1 cut(s)	204
TaqI	TCGA	1 cut(s)	506
TasI	AATT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	519
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	314
TseFI	GTSAC	2 cut(s)	154, 216
TseI	GCWGC	6 cut(s)	176, 179, 270, 277, 431, 461
Tsp45I	GTSAC	2 cut(s)	154, 216
TspDTI	ATGAA	1 cut(s)	492
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	322
XagI	CCTNNNNNAGG	1 cut(s)	477
XceI	RCATGY	2 cut(s)	217, 523
XmnI	GAANNNNTTC	1 cut(s)	487
XspI	CTAG	4 cut(s)	140, 152, 189, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.