Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011927

Physical Location & Seq

Genomic Coordinates Forward (+)

12725225 .. 12728337

Gene Structure 3113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGACAGTCATGTCCTCCTCCACTTCTTCTTCTTCGATTGCCAGATCTGGCACAAATGTTTTTGAAATTGGAAAATACAACGTAGTCCTCCAGATAGTTGAAGCAGCAGAGAGGAGTGCATGCAGCAGCAAAACCAAGTCGTCGTCGTCGTCAATTCCTCCTCTTAAAAATCCTCCGCCTCCAAAACCTCTATTGATTGGCATGCCTTGTGAAGCTACTGGAAAGTTACCGATGTTGCTGCTCCTCCATGGTTACCTTCTCTCCAACTCTTTCTATTCTCAGCTTATCAACCACATCACTTCTCATGGCTTCATTGTCATTGCCCCTCAGAATTTATATACCATAGTTGGACCAAACTCAAGTGATGAGATCAAGTCCACAGCTGTTCAGGCAAATCTAAGCAAGCTAGCACTCGCTGGCCATAGCCGCAAAGACAAGGTTTCGTTTGCACTAGCTTTAGGGAAAGAAGAAACTAGCACCAGCTTGAAGTTTTCAACCCTAATAGGCATTGACCCAGTGGATGGAATGGACACAGGGAAACAAACCCCTCCACCGATGCTAACCTATGTTCCTCAGTCATTCGATCTTGAGATGCCTGTGATGGTGATTGGTTCAGGTTTAGGTGAAGTGAAAAGGAACATTTTGTTTCCTCCTTGTGCTCCAAAGGGTGTAAACCATGAGGACTTCTTCAACGAATGCTGGAAACTGGCTTGTTATTTTGTGACCAAGGGGATTACAGGGAAAGCTACGTATTGTTTATGCAAAAATGGGAAGTCTAGGCAGCCCATGAGGAGGTTTGTTGGAGGGGTTATGGTTGCTTTCATAAAAGCTTATTTAGAAGGCGATAGCAGTTGGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009536 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0051186 GO:0051187 GO:0052689 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

287

Amino Acids

30.86

Weight (kDa)

9.09

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	18 - 128	3e-25	Chlorophyllase
Chlorophyllase	PF07224	128 - 284	5.9e-64	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011927)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43860
fragaria_vesca	FvH4_4g00030 FvH4_4g01061 FvH4_4g01061
malus_domestica	MD13G1198800.v1.1 MD16G1199000.v1.1
prunus_persica	Prupe.1G020600_v2.0.a1
pyrus_communis	pycom13g17260 pycom16g16760
rosa_laevigata	RLG00000010105
rosa_multiflora	Rmu_sc0003953.1_g000005 Rmu_sc0012183.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334310
rosa_rugosa	Rorug03G0311700
rosa_samantha	Rh4AG017300 Rh4BG012100 Rh4CG018500 Rh4DG013100
rosa_wichuraiana	Rw4G001110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	521
AciI	CCGC	2 cut(s)	176, 427
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	1 cut(s)	331
AfiI	CCNNNNNNNGG	2 cut(s)	521, 792
AgsI	TTSAA	5 cut(s)	65, 101, 487, 495, 691
AluBI	AGCT	8 cut(s)	215, 283, 383, 406, 455, 483, 746, 830
AluI	AGCT	8 cut(s)	215, 283, 383, 406, 455, 483, 746, 830
Alw21I	GWGCWC	1 cut(s)	661
AoxI	GGCC	1 cut(s)	418
ApeKI	GCWGC	5 cut(s)	104, 123, 126, 238, 781
ApoI	RAATTY	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	2 cut(s)	616, 635
AsuNHI	GCTAGC	1 cut(s)	406
AvaII	GGWCC	1 cut(s)	350
BalI	TGGCCA	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	661
BbvI	GCAGC	5 cut(s)	116, 135, 138, 225, 793
BccI	CCATC	2 cut(s)	515, 595
BcgI	CGANNNNNNTGC	2 cut(s)	220, 254
BfaI	CTAG	4 cut(s)	407, 452, 474, 777
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	6 cut(s)	105, 124, 127, 239, 427, 782
BlsI	GCNGC	6 cut(s)	106, 125, 128, 240, 428, 783
Bme18I	GGWCC	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	350
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	2 cut(s)	546, 582
BmtI	GCTAGC	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	509
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	2 cut(s)	343, 608
BsaAI	YACGTR	1 cut(s)	750
BsaJI	CCNNGG	2 cut(s)	247, 726
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	521, 792
Bse1I	ACTGG	3 cut(s)	223, 515, 711
Bse3DI	GCAATG	1 cut(s)	318
BseDI	CCNNGG	2 cut(s)	247, 726
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	521, 792
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	3 cut(s)	293, 341, 587
BseNI	ACTGG	3 cut(s)	223, 515, 711
BseRI	GAGGAG	5 cut(s)	7, 127, 150, 233, 805
BseXI	GCAGC	5 cut(s)	116, 135, 138, 225, 793
BshFI	GGCC	1 cut(s)	420
BsiHKAI	GWGCWC	1 cut(s)	661
BslI	CCNNNNNNNGG	2 cut(s)	521, 792
BsmI	GAATGC	1 cut(s)	701
BsnI	GGCC	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	661
Bsp143I	GATC	3 cut(s)	44, 369, 583
Bsp19I	CCATGG	1 cut(s)	247
BspACI	CCGC	2 cut(s)	176, 427
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	3 cut(s)	292, 340, 586
BspOI	GCTAGC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	223, 515, 711
BssECI	CCNNGG	2 cut(s)	247, 726
BssMI	GATC	3 cut(s)	44, 369, 583
BssT1I	CCWWGG	2 cut(s)	247, 726
Bst4CI	ACNGT	1 cut(s)	7
BstBAI	YACGTR	1 cut(s)	750
BstC8I	GCNNGC	5 cut(s)	121, 203, 404, 408, 418
BstDEI	CTNAG	4 cut(s)	279, 327, 398, 573
BstDSI	CCRYGG	1 cut(s)	247
BstEII	GGTNACC	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	3 cut(s)	47, 372, 586
BstMBI	GATC	3 cut(s)	44, 369, 583
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 426
BstNSI	RCATGY	2 cut(s)	123, 205
BstPI	GGTNACC	1 cut(s)	251
BstSNI	TACGTA	1 cut(s)	750
BstV1I	GCAGC	5 cut(s)	116, 135, 138, 225, 793
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	420
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	522
Cac8I	GCNNGC	5 cut(s)	121, 203, 404, 408, 418
Cfr13I	GGNCC	1 cut(s)	350
CviAII	CATG	7 cut(s)	10, 120, 202, 248, 305, 677, 787
DdeI	CTNAG	4 cut(s)	279, 327, 398, 573
DpnI	GATC	3 cut(s)	46, 371, 585
DpnII	GATC	3 cut(s)	44, 369, 583
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
EaeI	YGGCCR	1 cut(s)	418
EciI	GGCGGA	1 cut(s)	165
Eco105I	TACGTA	1 cut(s)	750
Eco130I	CCWWGG	2 cut(s)	247, 726
Eco47I	GGWCC	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	251
EcoO65I	GGTNACC	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	247, 726
ErhI	CCWWGG	2 cut(s)	247, 726
FaeI	CATG	7 cut(s)	13, 123, 205, 251, 308, 680, 790
FatI	CATG	7 cut(s)	9, 119, 201, 247, 304, 676, 786
Fnu4HI	GCNGC	6 cut(s)	105, 124, 127, 239, 427, 782
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	6 cut(s)	105, 124, 127, 239, 427, 782
FspBI	CTAG	4 cut(s)	407, 452, 474, 777
GluI	GCNGC	6 cut(s)	105, 124, 127, 239, 427, 782
GsuI	CTGGAG	1 cut(s)	74
HaeIII	GGCC	1 cut(s)	420
Hin1II	CATG	7 cut(s)	13, 123, 205, 251, 308, 680, 790
HindIII	AAGCTT	1 cut(s)	828
HphI	GGTGA	2 cut(s)	616, 635
Hpy166II	GTNNAC	2 cut(s)	378, 673
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	2 cut(s)	91, 587
Hpy8I	GTNNAC	2 cut(s)	378, 673
Hpy99I	CGWCG	3 cut(s)	145, 148, 151
HpyAV	CCTTC	2 cut(s)	266, 833
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4IV	ACGT	2 cut(s)	81, 749
HpyCH4V	TGCA	4 cut(s)	119, 123, 449, 762
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 426
HpyF3I	CTNAG	4 cut(s)	279, 327, 398, 573
HpySE526I	ACGT	2 cut(s)	81, 749
Hsp92II	CATG	7 cut(s)	13, 123, 205, 251, 308, 680, 790
Kzo9I	GATC	3 cut(s)	44, 369, 583
LmnI	GCTCC	2 cut(s)	246, 664
Lsp1109I	GCAGC	5 cut(s)	116, 135, 138, 225, 793
LweI	GCATC	2 cut(s)	546, 582
MaeI	CTAG	4 cut(s)	407, 452, 474, 777
MaeII	ACGT	2 cut(s)	81, 749
MaeIII	GTNAC	3 cut(s)	225, 251, 721
MalI	GATC	3 cut(s)	46, 371, 585
MboI	GATC	3 cut(s)	44, 369, 583
MboII	GAAGA	5 cut(s)	18, 21, 24, 479, 679
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	1 cut(s)	661
MlsI	TGGCCA	1 cut(s)	420
MluCI	AATT	3 cut(s)	66, 153, 331
MluNI	TGGCCA	1 cut(s)	420
MmeI	TCCRAC	3 cut(s)	288, 328, 781
Mox20I	TGGCCA	1 cut(s)	420
MscI	TGGCCA	1 cut(s)	420
MseI	TTAA	1 cut(s)	165
Msp20I	TGGCCA	1 cut(s)	420
MspA1I	CMGCKG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	701
MwoI	GCNNNNNNNGC	2 cut(s)	389, 426
NcoI	CCATGG	1 cut(s)	247
NdeII	GATC	3 cut(s)	44, 369, 583
NheI	GCTAGC	1 cut(s)	406
NlaIII	CATG	7 cut(s)	13, 123, 205, 251, 308, 680, 790
NmuCI	GTSAC	1 cut(s)	721
NspI	RCATGY	2 cut(s)	123, 205
PaeI	GCATGC	2 cut(s)	123, 205
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	1 cut(s)	701
PflMI	CCANNNNNTGG	1 cut(s)	521
PkrI	GCNGC	6 cut(s)	106, 125, 128, 240, 428, 783
Ppu21I	YACGTR	1 cut(s)	750
PspEI	GGTNACC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	6 cut(s)	105, 124, 127, 239, 427, 782
Sau3AI	GATC	3 cut(s)	44, 369, 583
Sau96I	GGNCC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	661
SfaNI	GCATC	2 cut(s)	546, 582
SinI	GGWCC	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	358, 587
SmoI	CTYRAG	2 cut(s)	358, 587
SnaBI	TACGTA	1 cut(s)	750
SphI	GCATGC	2 cut(s)	123, 205
Sse9I	AATT	3 cut(s)	66, 153, 331
SsiI	CCGC	2 cut(s)	176, 427
SspMI	CTAG	4 cut(s)	407, 452, 474, 777
StyI	CCWWGG	2 cut(s)	247, 726
TaaI	ACNGT	1 cut(s)	7
TaiI	ACGT	2 cut(s)	84, 752
TaqI	TCGA	2 cut(s)	35, 582
TasI	AATT	3 cut(s)	66, 153, 331
TauI	GCSGC	1 cut(s)	429
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	522
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	5 cut(s)	104, 123, 126, 238, 781
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	2 cut(s)	301, 811
TspRI	CASTG	1 cut(s)	522
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	331
XceI	RCATGY	2 cut(s)	123, 205
XspI	CTAG	4 cut(s)	407, 452, 474, 777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.