Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004071

Physical Location & Seq

Genomic Coordinates Reverse (-)

18764606 .. 18766617

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTCCCGCCTGGGTGGTTATTATATATTTATGTTAAAAAAAAAAAGGGGTGCAGCAATTGGAAATTGGAAAAGAAAGAGAGAAAAATGGCGGCAACCAGTGACGAAGAAATGGATTCTCTGCTTTCCACTTTGGATCAAATCTACCAGGACTTCAAGACCGGCGCAGCCGAGATCGAGTCGAGCAAATCCGCGTGCAATGCCGAGGCGAAGAAGCGAGAGGCTCTCGAATTCACCTGCAACAATCTCAGACAAGAAAACGAACGATTGAGCAGATTGTACACGGAGTCGTTCAGCAGTGTTGCTGATCAGCTCGAGTGGTGTACAAGAAGCCAGAGCTTGAAGGAAGAGGTGAAGAAAATGAGGGATGAGTGGATGAATAAAGAAGAAGAGCACAGGAAAGCAATGGAGTTGGTTAAGCAAGATTATGCTGCCAAGCTTGATGATTTGGAGGCTCAAATTAGAGGGTTCATGCTTGAGAAGGCAAAAAATGAAGCAACCATTAATCACCTTCAACGGGATTTAGCAGCCCATAAGTCCCATATGCATGTTCTAGCAAGCAGGTTGGACCACTTGCAGTTGGATGTGGAATCGAAATATATTCTTGAGATTCAGGATTTGAAGGACTGCCTTGCAATTGAACAGGAGGAGAAAAATGAGTTGAATAAAGAAGTCCAAGACTTGGAAAAGGAATTGCTAGTTAGCAGATCAAAGCTAGTTGAGCAGAAACAAGACTCAAACTCAACTTGGCAGGTCGAAACGCTGAAGACCAAGATTATGAAGCTGAGAAAGGAGAATGAGATCTTAAAGCGCAAGATGCTTCATTCAGACAAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0009987 GO:0010496 GO:0012505 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

32.79

Weight (kDa)

6.24

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26020 AT4G26020 AT4G26020
fragaria_vesca	FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070 FvH4_4g07070
malus_domestica	MD16G1247400.v1.1
prunus_persica	Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1 Prupe.1G073900_v2.0.a1
pyrus_communis	pycom16g20770
rosa_chinensis	RchiOBHm_Chr4g0399191
rosa_laevigata	RLG00000009291
rosa_multiflora	Rmu_sc0002582.1_g000003 Rmu_sc0024868.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344150
rosa_rugosa	Rorug04G0014800 Rorug04G0014900 Rorug04G0015000
rosa_samantha	Rh4AG092900 Rh4BG090700 Rh4CG101300 Rh4DG085200
rosa_wichuraiana	Rw4G007650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	245
Acc36I	ACCTGC	3 cut(s)	245, 552, 742
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccII	CGCG	1 cut(s)	194
AciI	CCGC	3 cut(s)	8, 92, 192
AclWI	GGATC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	785
AfaI	GTAC	2 cut(s)	281, 325
AfiI	CCNNNNNNNGG	2 cut(s)	517, 682
AgsI	TTSAA	6 cut(s)	157, 343, 515, 622, 641, 664
AjnI	CCWGG	2 cut(s)	10, 147
AluBI	AGCT	5 cut(s)	313, 339, 439, 715, 784
AluI	AGCT	5 cut(s)	313, 339, 439, 715, 784
Alw21I	GWGCWC	1 cut(s)	396
AlwI	GGATC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	314
ApeKI	GCWGC	4 cut(s)	54, 167, 431, 527
ApoI	RAATTY	1 cut(s)	230
AseI	ATTAAT	1 cut(s)	504
AspLEI	GCGC	2 cut(s)	167, 813
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	3 cut(s)	226, 364, 500
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	568
BbsI	GAAGAC	1 cut(s)	773
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	4 cut(s)	66, 179, 418, 539
BciT130I	CCWGG	2 cut(s)	12, 149
BclI	TGATCA	1 cut(s)	307
BfaI	CTAG	4 cut(s)	554, 698, 716, 838
BfuAI	ACCTGC	3 cut(s)	245, 552, 742
BglII	AGATCT	1 cut(s)	801
BisI	GCNGC	5 cut(s)	55, 93, 168, 432, 528
BlsI	GCNGC	5 cut(s)	56, 94, 169, 433, 529
Bme1390I	CCNGG	2 cut(s)	12, 149
Bme18I	GGWCC	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	568
BmrFI	CCNGG	2 cut(s)	12, 149
BmsI	GCATC	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	773
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpuEI	CTTGAG	2 cut(s)	497, 626
BsaJI	CCNNGG	2 cut(s)	11, 204
Bsc4I	CCNNNNNNNGG	2 cut(s)	517, 682
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	99
Bse3DI	GCAATG	2 cut(s)	205, 411
BseBI	CCWGG	2 cut(s)	12, 149
BseDI	CCNNGG	2 cut(s)	11, 204
BseGI	GGATG	3 cut(s)	373, 381, 589
BseLI	CCNNNNNNNGG	2 cut(s)	517, 682
BseMI	GCAATG	2 cut(s)	205, 411
BseMII	CTCAG	2 cut(s)	262, 776
BseNI	ACTGG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	662
BseXI	GCAGC	4 cut(s)	66, 179, 418, 539
BsgI	GTGCAG	1 cut(s)	73
Bsh1236I	CGCG	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	2 cut(s)	517, 682
BsmFI	GGGAC	1 cut(s)	523
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp1407I	TGTACA	2 cut(s)	279, 323
Bsp143I	GATC	5 cut(s)	136, 174, 307, 707, 801
BspACI	CCGC	3 cut(s)	8, 92, 192
BspCNI	CTCAG	2 cut(s)	261, 777
BspFNI	CGCG	1 cut(s)	194
BspMI	ACCTGC	3 cut(s)	245, 552, 742
BspPI	GGATC	1 cut(s)	144
BspQI	GCTCTTC	1 cut(s)	384
BsrDI	GCAATG	2 cut(s)	205, 411
BsrFI	RCCGGY	1 cut(s)	161
BsrGI	TGTACA	2 cut(s)	279, 323
BsrI	ACTGG	1 cut(s)	99
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	11, 204
BssMI	GATC	5 cut(s)	136, 174, 307, 707, 801
Bst2UI	CCWGG	2 cut(s)	12, 149
Bst6I	CTCTTC	2 cut(s)	342, 384
BstAUI	TGTACA	2 cut(s)	279, 323
BstC8I	GCNNGC	2 cut(s)	196, 559
BstDEI	CTNAG	2 cut(s)	248, 785
BstF5I	GGATG	3 cut(s)	373, 381, 589
BstFNI	CGCG	1 cut(s)	194
BstHHI	GCGC	2 cut(s)	167, 813
BstKTI	GATC	5 cut(s)	139, 177, 310, 710, 804
BstMBI	GATC	5 cut(s)	136, 174, 307, 707, 801
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 721, 817
BstNI	CCWGG	2 cut(s)	12, 149
BstNSI	RCATGY	1 cut(s)	551
BstSCI	CCNGG	2 cut(s)	10, 147
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	4 cut(s)	66, 179, 418, 539
BstV2I	GAAGAC	1 cut(s)	773
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
BtsCI	GGATG	3 cut(s)	373, 381, 589
BtsI	GCAGTG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	106, 304
BveI	ACCTGC	3 cut(s)	245, 552, 742
Cac8I	GCNNGC	2 cut(s)	196, 559
CfoI	GCGC	2 cut(s)	167, 813
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	568
Csp6I	GTAC	2 cut(s)	280, 324
CviAII	CATG	2 cut(s)	472, 548
CviQI	GTAC	2 cut(s)	280, 324
DdeI	CTNAG	2 cut(s)	248, 785
DpnI	GATC	5 cut(s)	138, 176, 309, 709, 803
DpnII	GATC	5 cut(s)	136, 174, 307, 707, 801
Eam1104I	CTCTTC	2 cut(s)	342, 384
EarI	CTCTTC	2 cut(s)	342, 384
Eco47I	GGWCC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	785
Eco88I	CYCGRG	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	230
EcoRII	CCWGG	2 cut(s)	10, 147
EcoT22I	ATGCAT	1 cut(s)	549
FaeI	CATG	2 cut(s)	475, 551
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	2 cut(s)	471, 547
FauI	CCCGC	1 cut(s)	15
FauNDI	CATATG	1 cut(s)	543
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	5 cut(s)	55, 93, 168, 432, 528
FokI	GGATG	3 cut(s)	380, 388, 596
Fsp4HI	GCNGC	5 cut(s)	55, 93, 168, 432, 528
FspBI	CTAG	4 cut(s)	554, 698, 716, 838
GlaI	GCGC	2 cut(s)	166, 812
GluI	GCNGC	5 cut(s)	55, 93, 168, 432, 528
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	2 cut(s)	167, 813
Hin1II	CATG	2 cut(s)	475, 551
Hin6I	GCGC	2 cut(s)	165, 811
HinP1I	GCGC	2 cut(s)	165, 811
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	6 cut(s)	116, 179, 287, 590, 610, 734
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	226, 364, 500
Hpy166II	GTNNAC	2 cut(s)	282, 324
Hpy188I	TCNGA	2 cut(s)	251, 829
Hpy188III	TCNNGA	4 cut(s)	157, 227, 605, 614
Hpy8I	GTNNAC	2 cut(s)	282, 324
HpyAV	CCTTC	4 cut(s)	337, 475, 521, 616
HpyCH4V	TGCA	6 cut(s)	54, 198, 240, 547, 577, 635
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 721, 817
HpyF3I	CTNAG	2 cut(s)	248, 785
Hsp92II	CATG	2 cut(s)	475, 551
HspAI	GCGC	2 cut(s)	165, 811
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	5 cut(s)	136, 174, 307, 707, 801
LguI	GCTCTTC	1 cut(s)	384
Lsp1109I	GCAGC	4 cut(s)	66, 179, 418, 539
LweI	GCATC	1 cut(s)	807
MaeI	CTAG	4 cut(s)	554, 698, 716, 838
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	5 cut(s)	138, 176, 309, 709, 803
MboI	GATC	5 cut(s)	136, 174, 307, 707, 801
MboII	GAAGA	7 cut(s)	119, 223, 359, 367, 398, 401, 778
MfeI	CAATTG	2 cut(s)	58, 636
MflI	RGATCY	1 cut(s)	801
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	6 cut(s)	58, 65, 230, 459, 636, 692
MlyI	GAGTC	3 cut(s)	188, 296, 728
MmeI	TCCRAC	2 cut(s)	546, 561
MnlI	CCTC	7 cut(s)	199, 214, 343, 357, 445, 458, 640
Mph1103I	ATGCAT	1 cut(s)	549
MseI	TTAA	4 cut(s)	36, 417, 504, 806
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	2 cut(s)	12, 149
MunI	CAATTG	2 cut(s)	58, 636
MvaI	CCWGG	2 cut(s)	12, 149
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	200, 721, 817
NdeI	CATATG	1 cut(s)	543
NdeII	GATC	5 cut(s)	136, 174, 307, 707, 801
NlaIII	CATG	2 cut(s)	475, 551
NmeAIII	GCCGAG	2 cut(s)	196, 229
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	549
NspI	RCATGY	1 cut(s)	551
PaeR7I	CTCGAG	1 cut(s)	314
PaqCI	CACCTGC	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	384
PfeI	GAWTC	3 cut(s)	116, 590, 610
PflMI	CCANNNNNTGG	1 cut(s)	682
PkrI	GCNGC	5 cut(s)	56, 94, 169, 433, 529
PleI	GAGTC	3 cut(s)	187, 295, 728
PpsI	GAGTC	3 cut(s)	187, 295, 728
PshBI	ATTAAT	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	10, 147
PspGI	CCWGG	2 cut(s)	10, 147
PspPI	GGNCC	1 cut(s)	568
PspXI	VCTCGAGB	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	801
RsaI	GTAC	2 cut(s)	281, 325
RsaNI	GTAC	2 cut(s)	280, 324
RseI	CAYNNNNRTG	1 cut(s)	546
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	4 cut(s)	36, 417, 504, 806
SatI	GCNGC	5 cut(s)	55, 93, 168, 432, 528
Sau3AI	GATC	5 cut(s)	136, 174, 307, 707, 801
Sau96I	GGNCC	1 cut(s)	568
SchI	GAGTC	3 cut(s)	188, 296, 728
ScrFI	CCNGG	2 cut(s)	12, 149
SduI	GDGCHC	1 cut(s)	396
SfaNI	GCATC	1 cut(s)	807
Sfr274I	CTCGAG	1 cut(s)	314
SinI	GGWCC	1 cut(s)	568
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	3 cut(s)	314, 476, 605
SmoI	CTYRAG	3 cut(s)	314, 476, 605
Sse9I	AATT	6 cut(s)	58, 65, 230, 459, 636, 692
SsiI	CCGC	3 cut(s)	8, 92, 192
SspMI	CTAG	4 cut(s)	554, 698, 716, 838
StyD4I	CCNGG	2 cut(s)	10, 147
TaqI	TCGA	6 cut(s)	177, 182, 228, 315, 593, 756
TasI	AATT	6 cut(s)	58, 65, 230, 459, 636, 692
TatI	WGTACW	2 cut(s)	279, 323
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	3 cut(s)	116, 590, 610
Tru1I	TTAA	4 cut(s)	36, 417, 504, 806
Tru9I	TTAA	4 cut(s)	36, 417, 504, 806
TscAI	CASTG	2 cut(s)	106, 304
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	4 cut(s)	54, 167, 431, 527
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	392, 460, 507, 794, 812
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	2 cut(s)	106, 304
Van91I	CCANNNNNTGG	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	568
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	551
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	4 cut(s)	554, 698, 716, 838
Zsp2I	ATGCAT	1 cut(s)	549

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.