Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002949

Physical Location & Seq

Genomic Coordinates Forward (+)

19017571 .. 19021404

Gene Structure 3834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g20920.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGTAAAAATGGTGGCCGTGGAGTTTGGGTGCGCGGTTGCCGTACTGTTTTCCCTTTTAATTATTGGCAAAGCTGATGTTTACATCGTGACGATTGAAGGAGAGCCTATTATAAGTTACCAAGGTGGTGTTGATGGATTTGAAGCCACTGCTGTGGAATCTGATGAAAAGATTGATACAACTAGTGAATCAGTCACGTCCTATGCCCGACACCTGGAGAGTAAACATGATATGCTTCTTGGCATGTTGTTTGAGGAAGGGAGCTACCAAAAACTCTACAGCTATCAACATCTTATTAATGGATTTGCAGTCCACATTTCTCATGAACAGGCAGAAACATTGATGCATGCTCCTGGTGTGAAATCGGTGGAGAGAGATTGGAAGGTGAAGAGACTTACAACCCACACCCCACAGTTTTTAGGTCTCCCAACTGGAGTATGGCCGACAGGAGGTGGCTTTGATAGGGCCGGGGAAGATATAGTGATAGGGTTTGTGGACTCAGGGATCTATCCGCACCATCCAAGCTTTGCGAGCCCCAATATCGATCCTTATGGGCCTGTTCCAAAGTATAGAGGTAAATGTGAAGTTGATCCAGACACAAAGAGGAACTTCTGTAATGGGAAGATTATTGGAGCTCACCATTTTGCCAAAGCTGCAATAGCAGCTGGGGTATTTAATCCTTCTATTGATTTTGACTCTCCTATGGATGGTGATGGACATGGAAGTCACACTGCAGCTATTGCAGCTGGTAATAATGGAATTCCAGTGAGAATGCGTGGTCATGAATTTGGGAAAGCAAGTGGGATGGCTCCCCGTGCCAGAATTGCTGTATATAAAGCCCTTTACAGGCTTTTTGGAGGGTTTGTTGCAGATGTAGTTGCCGCAATTGATCAGGCTGTATATGATGGAGTGGATATATTGAGCCTTTCTGTGGGGCCAAACAGTCCTCCAGCTACCACCAAGACCACTTATTTGAATCCTTTTGATGCCACACTTCTTTCAGCTGTGAAAGCAGGTGTATTTGTTGCACAAGCAGCTGGAAATGGAGGGCCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8 fn3_5

Protein Analysis

354

Amino Acids

37.63

Weight (kDa)

5.84

Isoelectric Point (pI)

25.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19170 AT2G19170 AT4G30020 AT4G30020 AT4G30020 AT4G30020
fragaria_vesca	FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370
malus_domestica	MD13G1242900.v1.1 MD16G1249700.v1.1
prunus_persica	Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1
pyrus_communis	pycom13g21460 pycom16g20920 pycom16g20930
rosa_chinensis	RchiOBHm_Chr4g0399741 RchiOBHm_Chr4g0399751
rosa_laevigata	RLG00000009242
rosa_multiflora	Rmu_sc0005299.1_g000011 Rmu_sc0028740.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344690
rosa_rugosa	Rorug04G0018500 Rorug04G0018600 Rorug04G0018700
rosa_samantha	Rh4AG096300 Rh4BG093700 Rh4CG105200 Rh4DG090100
rosa_wichuraiana	Rw4G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	113
AarI	CACCTGC	1 cut(s)	1004
AasI	GACNNNNNNGTC	1 cut(s)	723
Acc36I	ACCTGC	1 cut(s)	1004
AccII	CGCG	1 cut(s)	35
AciI	CCGC	3 cut(s)	35, 512, 882
AclWI	GGATC	3 cut(s)	512, 539, 584
AcoI	YGGCCR	2 cut(s)	15, 440
AcsI	RAATTY	2 cut(s)	759, 785
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	5 cut(s)	214, 449, 707, 846, 931
AgsI	TTSAA	3 cut(s)	98, 143, 976
AhlI	ACTAGT	1 cut(s)	182
AjiI	CACGTC	1 cut(s)	198
AjnI	CCWGG	2 cut(s)	213, 352
AleI	CACNNNNGTG	1 cut(s)	152
Alw21I	GWGCWC	1 cut(s)	637
Alw26I	GTCTC	2 cut(s)	385, 428
AlwI	GGATC	3 cut(s)	512, 539, 584
AoxI	GGCC	6 cut(s)	15, 440, 465, 554, 935, 1049
ApeKI	GCWGC	5 cut(s)	653, 662, 734, 743, 1034
ApoI	RAATTY	2 cut(s)	759, 785
ArsI	GACNNNNNNTTYG	2 cut(s)	955, 987
AseI	ATTAAT	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	4 cut(s)	465, 554, 935, 1049
AsuC2I	CCSGG	1 cut(s)	469
AsuHPI	GGTGA	3 cut(s)	397, 629, 722
BanII	GRGCYC	2 cut(s)	536, 637
Bbv12I	GWGCWC	1 cut(s)	637
BbvI	GCAGC	5 cut(s)	640, 674, 746, 755, 1046
BccI	CCATC	6 cut(s)	128, 525, 701, 707, 799, 899
BceAI	ACGGC	2 cut(s)	2, 26
BciT130I	CCWGG	2 cut(s)	215, 354
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	385, 428
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	2 cut(s)	277, 732
BfuAI	ACCTGC	1 cut(s)	1004
BisI	GCNGC	6 cut(s)	654, 663, 735, 744, 882, 1035
BlsI	GCNGC	6 cut(s)	655, 664, 736, 745, 883, 1036
Bme1390I	CCNGG	3 cut(s)	215, 354, 469
BmgBI	CACGTC	1 cut(s)	198
BmgT120I	GGNCC	4 cut(s)	465, 554, 935, 1049
BmiI	GGNNCC	2 cut(s)	810, 936
BmrFI	CCNGG	3 cut(s)	215, 354, 469
BmsI	GCATC	2 cut(s)	333, 976
BpmI	CTGGAG	3 cut(s)	236, 453, 933
BpuMI	CCSGG	1 cut(s)	469
Bsa29I	ATCGAT	1 cut(s)	543
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	18, 121, 468
BsaXI	ACNNNNNCTCC	4 cut(s)	14, 44, 849, 879
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 449, 707, 846, 931
Bse1I	ACTGG	2 cut(s)	436, 764
BseBI	CCWGG	2 cut(s)	215, 354
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	3 cut(s)	18, 121, 468
BseGI	GGATG	3 cut(s)	517, 712, 810
BseLI	CCNNNNNNNGG	5 cut(s)	214, 449, 707, 846, 931
BseMII	CTCAG	1 cut(s)	513
BseNI	ACTGG	2 cut(s)	436, 764
BseXI	GCAGC	5 cut(s)	640, 674, 746, 755, 1046
BseYI	CCCAGC	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	6 cut(s)	17, 442, 467, 556, 937, 1051
BshVI	ATCGAT	1 cut(s)	543
BsiHKAI	GWGCWC	1 cut(s)	637
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	5 cut(s)	214, 449, 707, 846, 931
BsmAI	GTCTC	2 cut(s)	385, 428
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	6 cut(s)	17, 442, 467, 556, 937, 1051
Bso31I	GGTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	536, 637
Bsp143I	GATC	4 cut(s)	504, 544, 589, 889
BspACI	CCGC	3 cut(s)	35, 512, 882
BspANI	GGCC	6 cut(s)	17, 442, 467, 556, 937, 1051
BspCNI	CTCAG	1 cut(s)	512
BspDI	ATCGAT	1 cut(s)	543
BspFNI	CGCG	1 cut(s)	35
BspHI	TCATGA	2 cut(s)	322, 781
BspLI	GGNNCC	2 cut(s)	810, 936
BspMAI	CTGCAG	1 cut(s)	736
BspMI	ACCTGC	1 cut(s)	1004
BspPI	GGATC	3 cut(s)	512, 539, 584
BspTNI	GGTCTC	1 cut(s)	428
BsrI	ACTGG	2 cut(s)	436, 764
BssECI	CCNNGG	3 cut(s)	18, 121, 468
BssMI	GATC	4 cut(s)	504, 544, 589, 889
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	2 cut(s)	215, 354
Bst4CI	ACNGT	3 cut(s)	48, 414, 944
Bst6I	CTCTTC	1 cut(s)	383
BstAPI	GCANNNNNTGC	1 cut(s)	740
BstC8I	GCNNGC	2 cut(s)	348, 532
BstDEI	CTNAG	1 cut(s)	499
BstDSI	CCRYGG	1 cut(s)	18
BstF5I	GGATG	3 cut(s)	517, 712, 810
BstFNI	CGCG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	4 cut(s)	507, 547, 592, 892
BstMAI	GTCTC	2 cut(s)	385, 428
BstMBI	GATC	4 cut(s)	504, 544, 589, 889
BstNI	CCWGG	2 cut(s)	215, 354
BstNSI	RCATGY	2 cut(s)	247, 350
BstSCI	CCNGG	3 cut(s)	213, 352, 467
BstSFI	CTRYAG	2 cut(s)	277, 732
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	5 cut(s)	640, 674, 746, 755, 1046
BstX2I	RGATCY	1 cut(s)	504
BstXI	CCANNNNNNTGG	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	504
Bsu15I	ATCGAT	1 cut(s)	543
BsuRI	GGCC	6 cut(s)	17, 442, 467, 556, 937, 1051
BsuTUI	ATCGAT	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	18
BtrI	CACGTC	1 cut(s)	198
BtsCI	GGATG	3 cut(s)	517, 712, 810
BtsI	GCAGTG	2 cut(s)	147, 729
BtsIMutI	CAGTG	3 cut(s)	147, 729, 771
BveI	ACCTGC	1 cut(s)	1004
Cac8I	GCNNGC	2 cut(s)	348, 532
CciI	TCATGA	2 cut(s)	322, 781
CfoI	GCGC	1 cut(s)	35
Cfr13I	GGNCC	4 cut(s)	465, 554, 935, 1049
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	44
CviAII	CATG	6 cut(s)	227, 244, 323, 347, 719, 782
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	1 cut(s)	499
DpnI	GATC	4 cut(s)	506, 546, 591, 891
DpnII	GATC	4 cut(s)	504, 544, 589, 889
DrdI	GACNNNNNNGTC	1 cut(s)	723
DseDI	GACNNNNNNGTC	1 cut(s)	723
EaeI	YGGCCR	2 cut(s)	15, 440
Eam1104I	CTCTTC	1 cut(s)	383
EarI	CTCTTC	1 cut(s)	383
Ecl136II	GAGCTC	1 cut(s)	635
Eco130I	CCWWGG	1 cut(s)	121
Eco24I	GRGCYC	2 cut(s)	536, 637
Eco31I	GGTCTC	1 cut(s)	428
Eco53kI	GAGCTC	1 cut(s)	635
EcoICRI	GAGCTC	1 cut(s)	635
EcoO109I	RGGNCCY	1 cut(s)	1049
EcoRI	GAATTC	1 cut(s)	759
EcoRII	CCWGG	2 cut(s)	213, 352
EcoT14I	CCWWGG	1 cut(s)	121
EcoT22I	ATGCAT	1 cut(s)	348
EcoT38I	GRGCYC	2 cut(s)	536, 637
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	6 cut(s)	230, 247, 326, 350, 722, 785
FalI	AAGNNNNNCTT	2 cut(s)	593, 625
FatI	CATG	6 cut(s)	226, 243, 322, 346, 718, 781
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	6 cut(s)	654, 663, 735, 744, 882, 1035
FokI	GGATG	3 cut(s)	504, 719, 817
FriOI	GRGCYC	2 cut(s)	536, 637
Fsp4HI	GCNGC	6 cut(s)	654, 663, 735, 744, 882, 1035
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	6 cut(s)	654, 663, 735, 744, 882, 1035
GsaI	CCCAGC	1 cut(s)	669
GsuI	CTGGAG	3 cut(s)	236, 453, 933
HaeIII	GGCC	6 cut(s)	17, 442, 467, 556, 937, 1051
HapII	CCGG	1 cut(s)	468
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	6 cut(s)	230, 247, 326, 350, 722, 785
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	5 cut(s)	158, 188, 497, 695, 976
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	3 cut(s)	397, 629, 722
Hpy166II	GTNNAC	4 cut(s)	82, 224, 313, 496
Hpy188I	TCNGA	1 cut(s)	163
Hpy188III	TCNNGA	4 cut(s)	88, 323, 593, 782
Hpy8I	GTNNAC	4 cut(s)	82, 224, 313, 496
HpyAV	CCTTC	4 cut(s)	92, 251, 376, 690
HpyCH4III	ACNGT	3 cut(s)	48, 414, 944
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	7 cut(s)	308, 346, 656, 734, 743, 869, 1028
HpyF3I	CTNAG	1 cut(s)	499
HpySE526I	ACGT	1 cut(s)	197
Hsp92II	CATG	6 cut(s)	230, 247, 326, 350, 722, 785
HspAI	GCGC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	4 cut(s)	504, 544, 589, 889
LmnI	GCTCC	4 cut(s)	261, 355, 632, 814
Lsp1109I	GCAGC	5 cut(s)	640, 674, 746, 755, 1046
LweI	GCATC	2 cut(s)	333, 976
MaeI	CTAG	1 cut(s)	183
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	4 cut(s)	88, 116, 193, 725
MalI	GATC	4 cut(s)	506, 546, 591, 891
MboI	GATC	4 cut(s)	504, 544, 589, 889
MboII	GAAGA	3 cut(s)	400, 485, 634
MfeI	CAATTG	1 cut(s)	885
MflI	RGATCY	1 cut(s)	504
MhlI	GDGCHC	2 cut(s)	536, 637
MluCI	AATT	5 cut(s)	60, 759, 785, 822, 885
MlyI	GAGTC	2 cut(s)	491, 689
MnlI	CCTC	7 cut(s)	247, 443, 566, 597, 851, 957, 1040
Mph1103I	ATGCAT	1 cut(s)	348
MseI	TTAA	3 cut(s)	59, 297, 675
MslI	CAYNNNNRTG	1 cut(s)	152
MspA1I	CMGCKG	4 cut(s)	665, 746, 1004, 1037
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	3 cut(s)	215, 354, 469
MunI	CAATTG	1 cut(s)	885
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	2 cut(s)	215, 354
MvnI	CGCG	1 cut(s)	35
NciI	CCSGG	1 cut(s)	469
NdeII	GATC	4 cut(s)	504, 544, 589, 889
NlaIII	CATG	6 cut(s)	230, 247, 326, 350, 722, 785
NlaIV	GGNNCC	2 cut(s)	810, 936
NmuCI	GTSAC	3 cut(s)	88, 193, 725
NsiI	ATGCAT	1 cut(s)	348
NspI	RCATGY	2 cut(s)	247, 350
OliI	CACNNNNGTG	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	350
PagI	TCATGA	2 cut(s)	322, 781
PaqCI	CACCTGC	1 cut(s)	1004
PctI	GAATGC	1 cut(s)	777
PfeI	GAWTC	3 cut(s)	158, 188, 976
PkrI	GCNGC	6 cut(s)	655, 664, 736, 745, 883, 1036
PleI	GAGTC	2 cut(s)	491, 689
PpsI	GAGTC	2 cut(s)	491, 689
PshBI	ATTAAT	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	113
Psp124BI	GAGCTC	1 cut(s)	637
Psp6I	CCWGG	2 cut(s)	213, 352
PspFI	CCCAGC	1 cut(s)	665
PspGI	CCWGG	2 cut(s)	213, 352
PspN4I	GGNNCC	2 cut(s)	810, 936
PspPI	GGNCC	4 cut(s)	465, 554, 935, 1049
PstI	CTGCAG	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	504
PvuII	CAGCTG	4 cut(s)	665, 746, 1004, 1037
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	152
SacI	GAGCTC	1 cut(s)	637
SaqAI	TTAA	3 cut(s)	59, 297, 675
SatI	GCNGC	6 cut(s)	654, 663, 735, 744, 882, 1035
Sau3AI	GATC	4 cut(s)	504, 544, 589, 889
Sau96I	GGNCC	4 cut(s)	465, 554, 935, 1049
SchI	GAGTC	2 cut(s)	491, 689
ScrFI	CCNGG	3 cut(s)	215, 354, 469
SduI	GDGCHC	2 cut(s)	536, 637
SfaNI	GCATC	2 cut(s)	333, 976
SfcI	CTRYAG	2 cut(s)	277, 732
SmiMI	CAYNNNNRTG	1 cut(s)	152
SpeI	ACTAGT	1 cut(s)	182
SphI	GCATGC	1 cut(s)	350
Sse9I	AATT	5 cut(s)	60, 759, 785, 822, 885
SsiI	CCGC	3 cut(s)	35, 512, 882
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	637
StyD4I	CCNGG	3 cut(s)	213, 352, 467
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	3 cut(s)	48, 414, 944
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	1 cut(s)	543
TasI	AATT	5 cut(s)	60, 759, 785, 822, 885
TauI	GCSGC	1 cut(s)	884
TfiI	GAWTC	3 cut(s)	158, 188, 976
Tru1I	TTAA	3 cut(s)	59, 297, 675
Tru9I	TTAA	3 cut(s)	59, 297, 675
TscAI	CASTG	3 cut(s)	154, 736, 771
TseFI	GTSAC	3 cut(s)	88, 193, 725
TseI	GCWGC	5 cut(s)	653, 662, 734, 743, 1034
Tsp45I	GTSAC	3 cut(s)	88, 193, 725
TspDTI	ATGAA	3 cut(s)	180, 339, 798
TspRI	CASTG	3 cut(s)	154, 736, 771
VspI	ATTAAT	1 cut(s)	297
XapI	RAATTY	2 cut(s)	759, 785
XceI	RCATGY	2 cut(s)	247, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	435
XspI	CTAG	1 cut(s)	183
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.