Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002949

Physical Location & Seq

Genomic Coordinates Forward (+)

17035723 .. 17038159

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37186

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATCTTATAGATTACTACAACATCTCCACATCAAGAGATTGGACTGGTCGAGTTAAGAGTTTCAAAGCTATAGGTAGCATTGGGGATGGTTTGACGCCTATACTCCATAAATCAGCACCCCAGGTGGCAATATTCTCTGCTCGAGGACCCAATATTAAAGATTTCAGCTTCCAAGATGCGGATCTTCTCAAACCAGATATTCTAGCTCCTGGTTCTCTGATTTGGGCTGCCTGGTCCCCTAATGGAACAGATGAGCCTGATTATGTTGGGGAGGGATTTGCCATGATTTCTGGAACAAGTATGGCTGCACCGCATATAGCAGGAATAGCTGCTCTTATAAAGCAGAAGCACCCTCATTGGAGCCCTGCTGCCATCAAGTCATCCTTGATGACAACATCAACAACCATAGACCGGGCTGGAAGGCCTCTCCAGGCACAACAGACTTCCGAAACACAAGGCGTTAAGTTTGTGAGTGCTACTCCTTTTGATTATGGTAGTGGTCATGTTGATCCAAGGGCTGCTCTAGATCCTGGACTAATCTTTGACGTGGGTTTTGAGGATTACGTGGGCTTCTTGTGTACAACACCTGGTATTGATGCCCATGAGATAAAGAAATACACAAACTCCCCCTGCAATTACACTATGGGCCACCCATCAAATTTCAACTCTCCGTCAATCACAGTAGCTCATCTTGTAGGAAGTCGTACAGTTACTCGCACAGTGACAAATGTTGCTCAAGAAGAAACCTATGTGATCACAGCCAGAATGGCTCCAGCAATTGCCATTAGTGTCAGCCCTCCAGCAATGACTCTGAAACCTGGTGCTTCTAGAAAGTTCTCTGTGAGTCTCACAGCTCGACGTTTGACTGGAACCTACAGTTTTGGAGAGGTTCTGTTGAAAGGTAGCCGGGGGCACAAGGTTAGGATCCCGGTGGTAGCTATGGGTTACCGACGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8 fn3_5

Protein Analysis

319

Amino Acids

34.27

Weight (kDa)

9.24

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	24 - 142	1.2e-21	Subtilase family
fn3_5	PF06280	216 - 313	3e-17	Fn3-like domain
fn3_6	PF17766	221 - 313	7e-19	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19170 AT2G19170 AT4G30020 AT4G30020 AT4G30020 AT4G30020
fragaria_vesca	FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370
malus_domestica	MD13G1242900.v1.1 MD16G1249700.v1.1
prunus_persica	Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1
pyrus_communis	pycom13g21460 pycom16g20920 pycom16g20930
rosa_chinensis	RchiOBHm_Chr4g0399741 RchiOBHm_Chr4g0399751
rosa_laevigata	RLG00000009242
rosa_multiflora	Rmu_sc0005299.1_g000011 Rmu_sc0028740.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344690
rosa_rugosa	Rorug04G0018500 Rorug04G0018600 Rorug04G0018700
rosa_samantha	Rh4AG096300 Rh4BG093700 Rh4CG105200 Rh4DG090100
rosa_wichuraiana	Rw4G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AciI	CCGC	2 cut(s)	182, 314
AclWI	GGATC	6 cut(s)	12, 192, 506, 524, 922, 935
AcsI	RAATTY	1 cut(s)	661
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	583, 709
AfiI	CCNNNNNNNGG	2 cut(s)	181, 414
AgsI	TTSAA	3 cut(s)	67, 667, 901
AjiI	CACGTC	1 cut(s)	550
AjnI	CCWGG	7 cut(s)	123, 211, 233, 432, 532, 589, 820
AluBI	AGCT	7 cut(s)	71, 171, 209, 332, 689, 857, 941
AluI	AGCT	7 cut(s)	71, 171, 209, 332, 689, 857, 941
Alw26I	GTCTC	1 cut(s)	854
AlwI	GGATC	6 cut(s)	12, 192, 506, 524, 922, 935
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	2 cut(s)	425, 649
ApeKI	GCWGC	5 cut(s)	230, 308, 332, 371, 521
ApoI	RAATTY	1 cut(s)	661
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AspS9I	GGNCC	3 cut(s)	149, 237, 649
AsuC2I	CCSGG	3 cut(s)	416, 911, 932
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	149, 237
BaeGI	GKGCMC	1 cut(s)	918
BamHI	GGATCC	1 cut(s)	927
BanII	GRGCYC	1 cut(s)	368
BbvI	GCAGC	5 cut(s)	217, 295, 319, 358, 508
BccI	CCATC	3 cut(s)	83, 383, 664
BciT130I	CCWGG	7 cut(s)	125, 213, 235, 434, 534, 591, 822
BclI	TGATCA	1 cut(s)	756
BcnI	CCSGG	3 cut(s)	416, 911, 932
BcoDI	GTCTC	1 cut(s)	854
BfaI	CTAG	3 cut(s)	206, 527, 831
BfmI	CTRYAG	2 cut(s)	72, 877
BglI	GCCNNNNNGGC	1 cut(s)	770
BisI	GCNGC	5 cut(s)	231, 309, 333, 372, 522
BlsI	GCNGC	5 cut(s)	232, 310, 334, 373, 523
Bme18I	GGWCC	2 cut(s)	149, 237
BmeT110I	CYCGRG	1 cut(s)	144
BmgBI	CACGTC	1 cut(s)	550
BmgT120I	GGNCC	3 cut(s)	149, 237, 649
BmiI	GGNNCC	6 cut(s)	151, 239, 365, 774, 874, 929
BmsI	GCATC	2 cut(s)	169, 589
BplI	GAGNNNNNCTC	2 cut(s)	466, 498
BpmI	CTGGAG	3 cut(s)	416, 759, 786
BpuEI	CTTGAG	1 cut(s)	723
BpuMI	CCSGG	3 cut(s)	416, 911, 932
BsaAI	YACGTR	1 cut(s)	568
BsaBI	GATNNNNATC	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	98
BsaJI	CCNNGG	3 cut(s)	123, 515, 910
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 611, 641
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 414
Bse1I	ACTGG	2 cut(s)	52, 874
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	183
BseBI	CCWGG	7 cut(s)	125, 213, 235, 434, 534, 591, 822
BseDI	CCNNGG	3 cut(s)	123, 515, 910
BseGI	GGATG	2 cut(s)	94, 383
BseJI	GATNNNNATC	1 cut(s)	183
BseLI	CCNNNNNNNGG	2 cut(s)	181, 414
BseMI	GCAATG	1 cut(s)	813
BseNI	ACTGG	2 cut(s)	52, 874
BseSI	GKGCMC	1 cut(s)	918
BseXI	GCAGC	5 cut(s)	217, 295, 319, 358, 508
BsgI	GTGCAG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	427, 651
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	415, 910, 932
BslFI	GGGAC	1 cut(s)	223
BslI	CCNNNNNNNGG	2 cut(s)	181, 414
BsmAI	GTCTC	1 cut(s)	854
BsmFI	GGGAC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	427, 651
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	368, 918
Bsp1407I	TGTACA	1 cut(s)	581
Bsp143I	GATC	6 cut(s)	4, 184, 511, 529, 756, 927
BspACI	CCGC	2 cut(s)	182, 314
BspANI	GGCC	2 cut(s)	427, 651
BspLI	GGNNCC	6 cut(s)	151, 239, 365, 774, 874, 929
BspPI	GGATC	6 cut(s)	12, 192, 506, 524, 922, 935
BsrDI	GCAATG	1 cut(s)	813
BsrGI	TGTACA	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	52, 874
BssECI	CCNNGG	3 cut(s)	123, 515, 910
BssMI	GATC	6 cut(s)	4, 184, 511, 529, 756, 927
BssNI	GRCGYC	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	515
Bst2UI	CCWGG	7 cut(s)	125, 213, 235, 434, 534, 591, 822
Bst4CI	ACNGT	5 cut(s)	685, 712, 724, 881, 957
BstACI	GRCGYC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	568
BstEII	GGTNACC	1 cut(s)	947
BstF5I	GGATG	2 cut(s)	94, 383
BstKTI	GATC	6 cut(s)	7, 187, 514, 532, 759, 930
BstMAI	GTCTC	1 cut(s)	854
BstMBI	GATC	6 cut(s)	4, 184, 511, 529, 756, 927
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 770
BstNI	CCWGG	7 cut(s)	125, 213, 235, 434, 534, 591, 822
BstPI	GGTNACC	1 cut(s)	947
BstSFI	CTRYAG	2 cut(s)	72, 877
BstSLI	GKGCMC	1 cut(s)	918
BstV1I	GCAGC	5 cut(s)	217, 295, 319, 358, 508
BstX2I	RGATCY	4 cut(s)	4, 184, 529, 927
BstYI	RGATCY	4 cut(s)	4, 184, 529, 927
BsuRI	GGCC	2 cut(s)	427, 651
BtrI	CACGTC	1 cut(s)	550
BtsCI	GGATG	2 cut(s)	94, 383
BtsIMutI	CAGTG	1 cut(s)	729
Cfr13I	GGNCC	3 cut(s)	149, 237, 649
CseI	GACGC	1 cut(s)	106
CsiI	ACCWGGT	2 cut(s)	589, 820
Csp6I	GTAC	2 cut(s)	582, 708
CviAII	CATG	3 cut(s)	286, 506, 605
CviQI	GTAC	2 cut(s)	582, 708
DpnI	GATC	6 cut(s)	6, 186, 513, 531, 758, 929
DpnII	GATC	6 cut(s)	4, 184, 511, 529, 756, 927
Eco130I	CCWWGG	1 cut(s)	515
Eco147I	AGGCCT	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	368
Eco47I	GGWCC	2 cut(s)	149, 237
Eco88I	CYCGRG	1 cut(s)	144
Eco91I	GGTNACC	1 cut(s)	947
EcoO109I	RGGNCCY	1 cut(s)	149
EcoO65I	GGTNACC	1 cut(s)	947
EcoRII	CCWGG	7 cut(s)	123, 211, 233, 432, 532, 589, 820
EcoT14I	CCWWGG	1 cut(s)	515
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	515
FaeI	CATG	3 cut(s)	289, 509, 608
FalI	AAGNNNNNCTT	2 cut(s)	371, 403
FaqI	GGGAC	1 cut(s)	223
FatI	CATG	3 cut(s)	285, 505, 604
FbaI	TGATCA	1 cut(s)	756
Fnu4HI	GCNGC	5 cut(s)	231, 309, 333, 372, 522
FokI	GGATG	2 cut(s)	101, 370
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	5 cut(s)	231, 309, 333, 372, 522
FspBI	CTAG	3 cut(s)	206, 527, 831
GluI	GCNGC	5 cut(s)	231, 309, 333, 372, 522
GsuI	CTGGAG	3 cut(s)	416, 759, 786
HaeIII	GGCC	2 cut(s)	427, 651
HapII	CCGG	3 cut(s)	415, 910, 932
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	289, 509, 608
HinfI	GANTC	2 cut(s)	811, 847
HpaII	CCGG	3 cut(s)	415, 910, 932
Hpy166II	GTNNAC	1 cut(s)	582
Hpy188I	TCNGA	3 cut(s)	222, 451, 816
Hpy188III	TCNNGA	5 cut(s)	36, 294, 527, 740, 831
Hpy8I	GTNNAC	1 cut(s)	582
Hpy99I	CGWCG	2 cut(s)	864, 957
HpyAV	CCTTC	1 cut(s)	417
HpyCH4III	ACNGT	5 cut(s)	685, 712, 724, 881, 957
HpyCH4IV	ACGT	3 cut(s)	549, 567, 862
HpyCH4V	TGCA	2 cut(s)	311, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 770
HpySE526I	ACGT	3 cut(s)	549, 567, 862
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	289, 509, 608
Ksp22I	TGATCA	1 cut(s)	756
Kzo9I	GATC	6 cut(s)	4, 184, 511, 529, 756, 927
LmnI	GCTCC	3 cut(s)	214, 363, 778
Lsp1109I	GCAGC	5 cut(s)	217, 295, 319, 358, 508
LweI	GCATC	2 cut(s)	169, 589
MabI	ACCWGGT	2 cut(s)	589, 820
MaeI	CTAG	3 cut(s)	206, 527, 831
MaeII	ACGT	3 cut(s)	549, 567, 862
MaeIII	GTNAC	3 cut(s)	712, 724, 947
MalI	GATC	6 cut(s)	6, 186, 513, 531, 758, 929
MboI	GATC	6 cut(s)	4, 184, 511, 529, 756, 927
MboII	GAAGA	2 cut(s)	179, 755
MfeI	CAATTG	1 cut(s)	780
MflI	RGATCY	4 cut(s)	4, 184, 529, 927
MhlI	GDGCHC	2 cut(s)	368, 918
MluCI	AATT	3 cut(s)	637, 661, 780
MlyI	GAGTC	2 cut(s)	805, 856
MnlI	CCTC	7 cut(s)	140, 268, 366, 438, 553, 810, 883
MseI	TTAA	3 cut(s)	57, 159, 465
MspI	CCGG	3 cut(s)	415, 910, 932
MunI	CAATTG	1 cut(s)	780
MvaI	CCWGG	7 cut(s)	125, 213, 235, 434, 534, 591, 822
MwoI	GCNNNNNNNGC	2 cut(s)	329, 770
NciI	CCSGG	3 cut(s)	416, 911, 932
NdeII	GATC	6 cut(s)	4, 184, 511, 529, 756, 927
NlaIII	CATG	3 cut(s)	289, 509, 608
NlaIV	GGNNCC	6 cut(s)	151, 239, 365, 774, 874, 929
NmuCI	GTSAC	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	144
PceI	AGGCCT	1 cut(s)	427
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	5 cut(s)	232, 310, 334, 373, 523
PleI	GAGTC	2 cut(s)	805, 855
PpsI	GAGTC	2 cut(s)	805, 855
Ppu21I	YACGTR	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	149
PsiI	TTATAA	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	7 cut(s)	123, 211, 233, 432, 532, 589, 820
PspEI	GGTNACC	1 cut(s)	947
PspGI	CCWGG	7 cut(s)	123, 211, 233, 432, 532, 589, 820
PspN4I	GGNNCC	6 cut(s)	151, 239, 365, 774, 874, 929
PspPI	GGNCC	3 cut(s)	149, 237, 649
PspPPI	RGGWCCY	1 cut(s)	149
PspXI	VCTCGAGB	1 cut(s)	144
PsuI	RGATCY	4 cut(s)	4, 184, 529, 927
RsaI	GTAC	2 cut(s)	583, 709
RsaNI	GTAC	2 cut(s)	582, 708
SaqAI	TTAA	3 cut(s)	57, 159, 465
SatI	GCNGC	5 cut(s)	231, 309, 333, 372, 522
Sau3AI	GATC	6 cut(s)	4, 184, 511, 529, 756, 927
Sau96I	GGNCC	3 cut(s)	149, 237, 649
SchI	GAGTC	2 cut(s)	805, 856
SduI	GDGCHC	2 cut(s)	368, 918
SexAI	ACCWGGT	2 cut(s)	589, 820
SfaNI	GCATC	2 cut(s)	169, 589
SfcI	CTRYAG	2 cut(s)	72, 877
Sfr274I	CTCGAG	1 cut(s)	144
SinI	GGWCC	2 cut(s)	149, 237
SlaI	CTCGAG	1 cut(s)	144
SmlI	CTYRAG	2 cut(s)	144, 738
SmoI	CTYRAG	2 cut(s)	144, 738
Sse9I	AATT	3 cut(s)	637, 661, 780
SseBI	AGGCCT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	182, 314
SspI	AATATT	2 cut(s)	135, 157
SspMI	CTAG	3 cut(s)	206, 527, 831
StuI	AGGCCT	1 cut(s)	427
StyI	CCWWGG	1 cut(s)	515
TaaI	ACNGT	5 cut(s)	685, 712, 724, 881, 957
TaiI	ACGT	3 cut(s)	552, 570, 865
TaqI	TCGA	3 cut(s)	52, 145, 859
TasI	AATT	3 cut(s)	637, 661, 780
TatI	WGTACW	1 cut(s)	581
Tru1I	TTAA	3 cut(s)	57, 159, 465
Tru9I	TTAA	3 cut(s)	57, 159, 465
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	5 cut(s)	230, 308, 332, 371, 521
Tsp45I	GTSAC	1 cut(s)	724
TspGWI	ACGGA	1 cut(s)	663
TspRI	CASTG	1 cut(s)	729
VpaK11BI	GGWCC	2 cut(s)	149, 237
XapI	RAATTY	1 cut(s)	661
XbaI	TCTAGA	2 cut(s)	526, 830
XhoI	CTCGAG	1 cut(s)	144
XspI	CTAG	3 cut(s)	206, 527, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.