Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002949

Physical Location & Seq

Genomic Coordinates Reverse (-)

2784471 .. 2785835

Gene Structure 1365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0018700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTATATGTTTGTGAGGTATGGTTTGGCTTTCGACCCTTCGAAATCGCCTCATTACACTGTGGTGTGTGTCAGTCACGACATTCTCCGCGGCAAGCGCCACAGCATAGAGATATATTCGTCGGAGACTGGAACTTGGGTGAAGCGTTTCAAGGCTCCTTTCTTCCCCAGCCCTTCGGACGAGGGCAGGCACATTGATACGCGCAATATGCCTATGCATTTTGATGAGAGGAGCAGGGAAGGGGCAGTGTATTGCAACGGCGCAATTCATTGGATAAGAAACAGATGCGAAGCGAGCCTGCCATTCTGCTCGGTGAGAATTGGTGAGGTTGAAACAGTTGGATTCGAAAGAAGTGAATTGGATGTGTTGCACTACTATGACATAGGTGAAGAAAGTCTGCGGCTCGTTGCTGCTACTCCTCCAGTTCCTTTGGTTGTGAAAAACATTCCGTTGGAGAAAGAACAAAACTTTCCTACTGAGTTTCCCCATTTGATTGATAGATACTTTGGCGAGTCAGGTGGTGGCTGTTTGTATTTGATTGAGGTGTTTGAGCAGTGTAAGACTCAATTTGAGGTGATGGAGATGGAGAGGGACTACTCTGGATGGTTTGTCAAGTACCATGTTGATCTTAGTCCGGTAGTCGCACCTCTCCCTGGACAGGATCCAAATACTTTTGTTGTCTTGTTCCTTTCAGGAGATGTGGAAACAGATGGTGAGGATTCTTCAACTGATCTTTGGTTGCATATGCCGGGTAAGGTCGTATCTTATAATCTCAGGAATAAGAGCTTCAAGACATCTGTTGAGTTAGCCAATAGGGAACTTTTTCTAGCTTTAGATTATGATGAATATGAGGATGACAACTATCCTTATATGGAGACTTTAGCTTGTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8 fn3_5

Protein Analysis

297

Amino Acids

34.21

Weight (kDa)

4.9

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19170 AT2G19170 AT4G30020 AT4G30020 AT4G30020 AT4G30020
fragaria_vesca	FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370
malus_domestica	MD13G1242900.v1.1 MD16G1249700.v1.1
prunus_persica	Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1
pyrus_communis	pycom13g21460 pycom16g20920 pycom16g20930
rosa_chinensis	RchiOBHm_Chr4g0399741 RchiOBHm_Chr4g0399751
rosa_laevigata	RLG00000009242
rosa_multiflora	Rmu_sc0005299.1_g000011 Rmu_sc0028740.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344690
rosa_rugosa	Rorug04G0018500 Rorug04G0018600 Rorug04G0018700
rosa_samantha	Rh4AG096300 Rh4BG093700 Rh4CG105200 Rh4DG090100
rosa_wichuraiana	Rw4G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	768
AccII	CGCG	2 cut(s)	90, 202
AciI	CCGC	3 cut(s)	88, 90, 400
AclWI	GGATC	2 cut(s)	656, 669
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	2 cut(s)	653, 658
AgsI	TTSAA	4 cut(s)	151, 332, 726, 790
AjnI	CCWGG	1 cut(s)	652
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	3 cut(s)	786, 830, 884
AluI	AGCT	3 cut(s)	786, 830, 884
Alw26I	GTCTC	2 cut(s)	119, 869
AlwI	GGATC	2 cut(s)	656, 669
ApeKI	GCWGC	1 cut(s)	410
Asp700I	GAANNNNTTC	2 cut(s)	146, 822
AspLEI	GCGC	3 cut(s)	99, 204, 263
AsuC2I	CCSGG	1 cut(s)	750
AsuHPI	GGTGA	6 cut(s)	151, 325, 335, 398, 586, 725
AsuII	TTCGAA	2 cut(s)	41, 345
BamHI	GGATCC	1 cut(s)	661
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	4 cut(s)	571, 577, 597, 704
BceAI	ACGGC	1 cut(s)	274
BciT130I	CCWGG	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	750
BcoDI	GTCTC	2 cut(s)	119, 869
BfaI	CTAG	1 cut(s)	827
BfoI	RGCGCY	1 cut(s)	100
BisI	GCNGC	3 cut(s)	91, 401, 411
BlsI	GCNGC	3 cut(s)	92, 402, 412
Bme1390I	CCNGG	2 cut(s)	654, 750
BmiI	GGNNCC	2 cut(s)	156, 663
BmrFI	CCNGG	2 cut(s)	654, 750
BmsI	GCATC	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	405
Bpu14I	TTCGAA	2 cut(s)	41, 345
BpuMI	CCSGG	1 cut(s)	750
BsaJI	CCNNGG	2 cut(s)	88, 652
BsaWI	WCCGGW	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 658
Bse1I	ACTGG	2 cut(s)	133, 422
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	88, 652
BseGI	GGATG	3 cut(s)	367, 608, 859
BseLI	CCNNNNNNNGG	2 cut(s)	653, 658
BseMII	CTCAG	2 cut(s)	468, 787
BseNI	ACTGG	2 cut(s)	133, 422
BseRI	GAGGAG	2 cut(s)	244, 408
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	167
Bsh1236I	CGCG	2 cut(s)	90, 202
BsiSI	CCGG	2 cut(s)	635, 749
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	2 cut(s)	653, 658
BsmAI	GTCTC	2 cut(s)	119, 869
BsmFI	GGGAC	1 cut(s)	605
Bsp119I	TTCGAA	2 cut(s)	41, 345
Bsp143I	GATC	3 cut(s)	625, 661, 730
BspACI	CCGC	3 cut(s)	88, 90, 400
BspCNI	CTCAG	2 cut(s)	469, 786
BspFNI	CGCG	2 cut(s)	90, 202
BspLI	GGNNCC	2 cut(s)	156, 663
BspPI	GGATC	2 cut(s)	656, 669
BspT104I	TTCGAA	2 cut(s)	41, 345
BsrI	ACTGG	2 cut(s)	133, 422
BssECI	CCNNGG	2 cut(s)	88, 652
BssMI	GATC	3 cut(s)	625, 661, 730
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	2 cut(s)	61, 337
BstBI	TTCGAA	2 cut(s)	41, 345
BstC8I	GCNNGC	4 cut(s)	95, 188, 295, 299
BstDEI	CTNAG	3 cut(s)	477, 629, 773
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	3 cut(s)	367, 608, 859
BstFNI	CGCG	2 cut(s)	90, 202
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	3 cut(s)	99, 204, 263
BstKTI	GATC	3 cut(s)	628, 664, 733
BstMAI	GTCTC	2 cut(s)	119, 869
BstMBI	GATC	3 cut(s)	625, 661, 730
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 208, 294
BstNI	CCWGG	1 cut(s)	654
BstSCI	CCNGG	2 cut(s)	652, 748
BstUI	CGCG	2 cut(s)	90, 202
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BtgI	CCRYGG	1 cut(s)	88
BtsCI	GGATG	3 cut(s)	367, 608, 859
BtsI	GCAGTG	2 cut(s)	252, 560
BtsIMutI	CAGTG	3 cut(s)	57, 252, 560
Cac8I	GCNNGC	4 cut(s)	95, 188, 295, 299
CfoI	GCGC	3 cut(s)	99, 204, 263
Cfr42I	CCGCGG	1 cut(s)	91
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	1 cut(s)	620
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	3 cut(s)	477, 629, 773
DpnI	GATC	3 cut(s)	627, 663, 732
DpnII	GATC	3 cut(s)	625, 661, 730
EcoRII	CCWGG	1 cut(s)	652
EcoT22I	ATGCAT	1 cut(s)	219
FaeI	CATG	1 cut(s)	623
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	1 cut(s)	619
FauNDI	CATATG	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	91, 401, 411
FokI	GGATG	3 cut(s)	374, 615, 866
Fsp4HI	GCNGC	3 cut(s)	91, 401, 411
FspBI	CTAG	1 cut(s)	827
GlaI	GCGC	3 cut(s)	98, 203, 262
GluI	GCNGC	3 cut(s)	91, 401, 411
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	405
HaeII	RGCGCY	1 cut(s)	100
HapII	CCGG	2 cut(s)	635, 749
HhaI	GCGC	3 cut(s)	99, 204, 263
Hin1II	CATG	1 cut(s)	623
Hin6I	GCGC	3 cut(s)	97, 202, 261
HinP1I	GCGC	3 cut(s)	97, 202, 261
HinfI	GANTC	4 cut(s)	342, 512, 562, 719
HpaII	CCGG	2 cut(s)	635, 749
HphI	GGTGA	6 cut(s)	151, 325, 335, 398, 586, 725
Hpy188I	TCNGA	2 cut(s)	124, 178
Hpy188III	TCNNGA	5 cut(s)	77, 600, 693, 775, 790
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	3 cut(s)	48, 183, 233
HpyCH4III	ACNGT	2 cut(s)	61, 337
HpyCH4V	TGCA	4 cut(s)	217, 255, 370, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 208, 294
HpyF3I	CTNAG	3 cut(s)	477, 629, 773
Hsp92II	CATG	1 cut(s)	623
HspAI	GCGC	3 cut(s)	97, 202, 261
KspI	CCGCGG	1 cut(s)	91
Kzo9I	GATC	3 cut(s)	625, 661, 730
LmnI	GCTCC	2 cut(s)	160, 231
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	275
MaeI	CTAG	1 cut(s)	827
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	3 cut(s)	627, 663, 732
MboI	GATC	3 cut(s)	625, 661, 730
MboII	GAAGA	3 cut(s)	154, 401, 714
MflI	RGATCY	1 cut(s)	661
MluCI	AATT	4 cut(s)	264, 318, 356, 566
MlyI	GAGTC	2 cut(s)	521, 556
MmeI	TCCRAC	3 cut(s)	102, 319, 432
Mph1103I	ATGCAT	1 cut(s)	219
MroXI	GAANNNNTTC	2 cut(s)	146, 822
MslI	CAYNNNNRTG	3 cut(s)	62, 222, 375
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	2 cut(s)	635, 749
MspR9I	CCNGG	2 cut(s)	654, 750
MvaI	CCWGG	1 cut(s)	654
MvnI	CGCG	2 cut(s)	90, 202
MwoI	GCNNNNNNNGC	3 cut(s)	96, 208, 294
NciI	CCSGG	1 cut(s)	750
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	3 cut(s)	625, 661, 730
NlaIII	CATG	1 cut(s)	623
NlaIV	GGNNCC	2 cut(s)	156, 663
NmuCI	GTSAC	1 cut(s)	74
NsiI	ATGCAT	1 cut(s)	219
NspV	TTCGAA	2 cut(s)	41, 345
OliI	CACNNNNGTG	1 cut(s)	62
PdmI	GAANNNNTTC	2 cut(s)	146, 822
PfeI	GAWTC	2 cut(s)	342, 719
PkrI	GCNGC	3 cut(s)	92, 402, 412
PleI	GAGTC	2 cut(s)	520, 556
PpsI	GAGTC	2 cut(s)	520, 556
PsiI	TTATAA	1 cut(s)	768
Psp6I	CCWGG	1 cut(s)	652
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	652
PspN4I	GGNNCC	2 cut(s)	156, 663
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
RseI	CAYNNNNRTG	3 cut(s)	62, 222, 375
SacII	CCGCGG	1 cut(s)	91
SatI	GCNGC	3 cut(s)	91, 401, 411
Sau3AI	GATC	3 cut(s)	625, 661, 730
SchI	GAGTC	2 cut(s)	521, 556
ScrFI	CCNGG	2 cut(s)	654, 750
SfaNI	GCATC	1 cut(s)	275
Sfr303I	CCGCGG	1 cut(s)	91
SfuI	TTCGAA	2 cut(s)	41, 345
SgrBI	CCGCGG	1 cut(s)	91
SmiMI	CAYNNNNRTG	3 cut(s)	62, 222, 375
Sse9I	AATT	4 cut(s)	264, 318, 356, 566
SsiI	CCGC	3 cut(s)	88, 90, 400
SspMI	CTAG	1 cut(s)	827
StyD4I	CCNGG	2 cut(s)	652, 748
TaaI	ACNGT	2 cut(s)	61, 337
TaqI	TCGA	3 cut(s)	33, 41, 345
TasI	AATT	4 cut(s)	264, 318, 356, 566
TauI	GCSGC	2 cut(s)	93, 403
TfiI	GAWTC	2 cut(s)	342, 719
TscAI	CASTG	3 cut(s)	64, 252, 560
TseFI	GTSAC	1 cut(s)	74
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	2 cut(s)	257, 858
TspGWI	ACGGA	1 cut(s)	438
TspRI	CASTG	3 cut(s)	64, 252, 560
XmnI	GAANNNNTTC	2 cut(s)	146, 822
XspI	CTAG	1 cut(s)	827
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.