Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0002949

Physical Location & Seq

Genomic Coordinates Forward (+)

19022833 .. 19024608

Gene Structure 1776 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGATCTTATAGATTATTACAACATCTCTACAGTAAGGGATTGGACTGGTCGTGTAAAGAGCTTCAAAGCTATAGGTAGCATTGGGAATGGTTTGACGCCTATACTCCACAAGTCTGCACCACAGGTGGCAATATTCTCTGCTAGAGGACCCAACATCAAAGATTTCAGCTTCCAAGAAGCAGATCTTCTCAAGCCGGATATTCTAGCTCCTGGTTCTCTAATTTGGGCTGCTTGGTCTCCAAATGGAACAGATGAACCTGATTATGTTGGGGAGGGATTTGCCATGATTTCGGGAACAAGTATGGCTGCACCACATATAGCTGGAATAGCTGCTCTTATAAAGCAGAAGCACCCTCATTGGAGCCCCTCCGCCATCAAATCAGCTTTGATGACAACATCAACAACTATGGACAGGGCTGGCAGACCTCTTCAAGCACAACAATATTCTGAAACACAAGCCATTAAGTTTGTCAGTGCCACCCCTTTTGATTATGGGAGTGGCCATGTCGATCCAAGAGCTGCTCTGGATCCTGGACTAATCTTTGATGCGGGCTATCAGGATTACTTGGGTTTCTTGTGTACAACACCTGGTATTAATTCTAATGAGATAAAGAAGTACACAAACTCCCCCTGCAATTACACTATGGTCCGCCCGTCGAATTTCAACTCTCCTTCAATCACAGTAGCTCATCTTGTGAAAAGTCAAACGGTTACACGCAGAGTCACAAATGTTGCACAAGAAGAAACCTATGTGATCGATACAACCAGAATGGCCCCAGCCGTTGCCATCGAAGCTAGCCCTCGGGCAATGACTCTGAGACCTGGTGCATCGCGAAAGTTCTCAGTGACTCTGACAGTTCGGTCTGTGACGGGATCCTACAGTTTTGGCGAGGTGATGATGAAAGGTAGCCGGGGGCACAAGGTGAGGATCCCAGTGGTAGCTATGGGATACCAACGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0016787 GO:0017171 GO:0019538 GO:0043170 GO:0044238 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8 fn3_5

Protein Analysis

321

Amino Acids

34.74

Weight (kDa)

9.41

Isoelectric Point (pI)

32.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S8	PF00082	24 - 137	5.2e-22	Subtilase family
fn3_5	PF06280	213 - 314	6.8e-17	Fn3-like domain
fn3_6	PF17766	221 - 314	3.9e-17	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002949)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19170 AT2G19170 AT4G30020 AT4G30020 AT4G30020 AT4G30020
fragaria_vesca	FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370 FvH4_4g07370
malus_domestica	MD13G1242900.v1.1 MD16G1249700.v1.1
prunus_persica	Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1 Prupe.1G076600_v2.0.a1
pyrus_communis	pycom13g21460 pycom16g20920 pycom16g20930
rosa_chinensis	RchiOBHm_Chr4g0399741 RchiOBHm_Chr4g0399751
rosa_laevigata	RLG00000009242
rosa_multiflora	Rmu_sc0005299.1_g000011 Rmu_sc0028740.1_g000001
rosa_roxburghii	Rroxscaffold_5G00344690
rosa_rugosa	Rorug04G0018500 Rorug04G0018600 Rorug04G0018700
rosa_samantha	Rh4AG096300 Rh4BG093700 Rh4CG105200 Rh4DG090100
rosa_wichuraiana	Rw4G007960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	341
AasI	GACNNNNNNGTC	1 cut(s)	862
AccII	CGCG	1 cut(s)	835
AciI	CCGC	3 cut(s)	372, 551, 652
AclWI	GGATC	8 cut(s)	12, 506, 524, 537, 870, 883, 925, 938
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	661
AcyI	GRCGYC	1 cut(s)	98
AdeI	CACNNNGTG	1 cut(s)	925
AfaI	GTAC	2 cut(s)	583, 620
AgsI	TTSAA	4 cut(s)	67, 434, 667, 678
AjnI	CCWGG	4 cut(s)	211, 532, 589, 823
Alw26I	GTCTC	2 cut(s)	243, 814
AlwI	GGATC	8 cut(s)	12, 506, 524, 537, 870, 883, 925, 938
Ama87I	CYCGRG	1 cut(s)	804
AoxI	GGCC	2 cut(s)	502, 774
ApeKI	GCWGC	4 cut(s)	230, 308, 332, 521
ApoI	RAATTY	1 cut(s)	661
AseI	ATTAAT	1 cut(s)	597
AspS9I	GGNCC	3 cut(s)	149, 649, 775
AsuC2I	CCSGG	1 cut(s)	914
AsuHPI	GGTGA	2 cut(s)	907, 937
AsuNHI	GCTAGC	1 cut(s)	797
AvaI	CYCGRG	1 cut(s)	804
AvaII	GGWCC	2 cut(s)	149, 649
BaeGI	GKGCMC	1 cut(s)	921
BalI	TGGCCA	1 cut(s)	504
BamHI	GGATCC	3 cut(s)	529, 875, 930
BanII	GRGCYC	1 cut(s)	368
BbvI	GCAGC	4 cut(s)	217, 295, 319, 508
BccI	CCATC	2 cut(s)	383, 797
BceAI	ACGGC	1 cut(s)	767
BciT130I	CCWGG	4 cut(s)	213, 534, 591, 825
BciVI	GTATCC	1 cut(s)	944
BcnI	CCSGG	1 cut(s)	914
BcoDI	GTCTC	2 cut(s)	243, 814
BfaI	CTAG	3 cut(s)	144, 206, 798
BfmI	CTRYAG	3 cut(s)	30, 72, 880
BfuI	GTATCC	1 cut(s)	944
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	4 cut(s)	231, 309, 333, 522
BlsI	GCNGC	4 cut(s)	232, 310, 334, 523
Bme1390I	CCNGG	5 cut(s)	213, 534, 591, 825, 914
Bme18I	GGWCC	2 cut(s)	149, 649
BmeT110I	CYCGRG	1 cut(s)	804
BmgT120I	GGNCC	3 cut(s)	149, 649, 775
BmiI	GGNNCC	6 cut(s)	151, 365, 531, 777, 877, 932
BmrFI	CCNGG	5 cut(s)	213, 534, 591, 825, 914
BmrI	ACTGGG	1 cut(s)	929
BmsI	GCATC	2 cut(s)	538, 839
BmtI	GCTAGC	1 cut(s)	801
BmuI	ACTGGG	1 cut(s)	929
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	914
Bsa29I	ATCGAT	1 cut(s)	759
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	2 cut(s)	243, 814
BsaJI	CCNNGG	2 cut(s)	803, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	611, 641
Bse1I	ACTGG	2 cut(s)	52, 935
Bse3DI	GCAATG	1 cut(s)	816
BseBI	CCWGG	4 cut(s)	213, 534, 591, 825
BseCI	ATCGAT	1 cut(s)	759
BseDI	CCNNGG	2 cut(s)	803, 913
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	2 cut(s)	809, 858
BseNI	ACTGG	2 cut(s)	52, 935
BseSI	GKGCMC	1 cut(s)	921
BseXI	GCAGC	4 cut(s)	217, 295, 319, 508
BseYI	CCCAGC	1 cut(s)	778
BsgI	GTGCAG	2 cut(s)	102, 294
Bsh1236I	CGCG	1 cut(s)	835
BshFI	GGCC	2 cut(s)	504, 776
BshVI	ATCGAT	1 cut(s)	759
BsiHKCI	CYCGRG	1 cut(s)	804
BsiSI	CCGG	2 cut(s)	197, 913
BsmAI	GTCTC	2 cut(s)	243, 814
BsnI	GGCC	2 cut(s)	504, 776
Bso31I	GGTCTC	2 cut(s)	243, 814
BsoBI	CYCGRG	1 cut(s)	804
Bsp1286I	GDGCHC	2 cut(s)	368, 921
Bsp1407I	TGTACA	1 cut(s)	581
Bsp143I	GATC	7 cut(s)	4, 184, 511, 529, 756, 875, 930
Bsp68I	TCGCGA	1 cut(s)	835
BspACI	CCGC	3 cut(s)	372, 551, 652
BspANI	GGCC	2 cut(s)	504, 776
BspCNI	CTCAG	2 cut(s)	810, 857
BspDI	ATCGAT	1 cut(s)	759
BspFNI	CGCG	1 cut(s)	835
BspLI	GGNNCC	6 cut(s)	151, 365, 531, 777, 877, 932
BspOI	GCTAGC	1 cut(s)	801
BspPI	GGATC	8 cut(s)	12, 506, 524, 537, 870, 883, 925, 938
BspTNI	GGTCTC	2 cut(s)	243, 814
BsrDI	GCAATG	1 cut(s)	816
BsrGI	TGTACA	1 cut(s)	581
BsrI	ACTGG	2 cut(s)	52, 935
BssECI	CCNNGG	2 cut(s)	803, 913
BssMI	GATC	7 cut(s)	4, 184, 511, 529, 756, 875, 930
BssNI	GRCGYC	1 cut(s)	98
Bst2UI	CCWGG	4 cut(s)	213, 534, 591, 825
Bst4CI	ACNGT	6 cut(s)	34, 685, 712, 859, 884, 960
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	581
BstC8I	GCNNGC	3 cut(s)	421, 553, 799
BstDEI	CTNAG	2 cut(s)	818, 844
BstFNI	CGCG	1 cut(s)	835
BstKTI	GATC	7 cut(s)	7, 187, 514, 532, 759, 878, 933
BstMAI	GTCTC	2 cut(s)	243, 814
BstMBI	GATC	7 cut(s)	4, 184, 511, 529, 756, 875, 930
BstMWI	GCNNNNNNNGC	2 cut(s)	329, 794
BstNI	CCWGG	4 cut(s)	213, 534, 591, 825
BstSCI	CCNGG	5 cut(s)	211, 532, 589, 823, 912
BstSFI	CTRYAG	3 cut(s)	30, 72, 880
BstSLI	GKGCMC	1 cut(s)	921
BstUI	CGCG	1 cut(s)	835
BstV1I	GCAGC	4 cut(s)	217, 295, 319, 508
BstX2I	RGATCY	5 cut(s)	4, 184, 529, 875, 930
BstYI	RGATCY	5 cut(s)	4, 184, 529, 875, 930
Bsu15I	ATCGAT	1 cut(s)	759
BsuI	GTATCC	1 cut(s)	944
BsuRI	GGCC	2 cut(s)	504, 776
BsuTUI	ATCGAT	1 cut(s)	759
BtgZI	GCGATG	1 cut(s)	816
BtsIMutI	CAGTG	3 cut(s)	481, 852, 942
BtuMI	TCGCGA	1 cut(s)	835
Cac8I	GCNNGC	3 cut(s)	421, 553, 799
Cfr13I	GGNCC	3 cut(s)	149, 649, 775
ClaI	ATCGAT	1 cut(s)	759
CseI	GACGC	1 cut(s)	106
CsiI	ACCWGGT	2 cut(s)	589, 823
Csp6I	GTAC	2 cut(s)	582, 619
CspCI	CAANNNNNGTGG	2 cut(s)	469, 504
CviAII	CATG	2 cut(s)	286, 506
CviQI	GTAC	2 cut(s)	582, 619
DdeI	CTNAG	2 cut(s)	818, 844
DpnI	GATC	7 cut(s)	6, 186, 513, 531, 758, 877, 932
DpnII	GATC	7 cut(s)	4, 184, 511, 529, 756, 875, 930
DraIII	CACNNNGTG	1 cut(s)	925
DrdI	GACNNNNNNGTC	1 cut(s)	862
DseDI	GACNNNNNNGTC	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
EciI	GGCGGA	2 cut(s)	361, 641
Eco24I	GRGCYC	1 cut(s)	368
Eco31I	GGTCTC	2 cut(s)	243, 814
Eco47I	GGWCC	2 cut(s)	149, 649
Eco88I	CYCGRG	1 cut(s)	804
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRII	CCWGG	4 cut(s)	211, 532, 589, 823
EcoT38I	GRGCYC	1 cut(s)	368
FaeI	CATG	2 cut(s)	289, 509
FalI	AAGNNNNNCTT	2 cut(s)	171, 203
FatI	CATG	2 cut(s)	285, 505
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	4 cut(s)	231, 309, 333, 522
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	4 cut(s)	231, 309, 333, 522
FspBI	CTAG	3 cut(s)	144, 206, 798
GluI	GCNGC	4 cut(s)	231, 309, 333, 522
GsaI	CCCAGC	1 cut(s)	782
HaeIII	GGCC	2 cut(s)	504, 776
HapII	CCGG	2 cut(s)	197, 913
HgaI	GACGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	2 cut(s)	289, 509
HinfI	GANTC	3 cut(s)	723, 814, 850
HpaII	CCGG	2 cut(s)	197, 913
HphI	GGTGA	2 cut(s)	907, 937
Hpy166II	GTNNAC	2 cut(s)	582, 621
Hpy188I	TCNGA	3 cut(s)	451, 819, 855
Hpy188III	TCNNGA	4 cut(s)	294, 527, 560, 834
Hpy8I	GTNNAC	2 cut(s)	582, 621
Hpy99I	CGWCG	1 cut(s)	661
HpyAV	CCTTC	1 cut(s)	684
HpyCH4III	ACNGT	6 cut(s)	34, 685, 712, 859, 884, 960
HpyCH4V	TGCA	5 cut(s)	119, 311, 636, 737, 830
HpyF10VI	GCNNNNNNNGC	2 cut(s)	329, 794
HpyF3I	CTNAG	2 cut(s)	818, 844
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	2 cut(s)	289, 509
Kzo9I	GATC	7 cut(s)	4, 184, 511, 529, 756, 875, 930
LmnI	GCTCC	2 cut(s)	214, 363
Lsp1109I	GCAGC	4 cut(s)	217, 295, 319, 508
LweI	GCATC	2 cut(s)	538, 839
MabI	ACCWGGT	2 cut(s)	589, 823
MaeI	CTAG	3 cut(s)	144, 206, 798
MaeIII	GTNAC	4 cut(s)	712, 724, 847, 868
MalI	GATC	7 cut(s)	6, 186, 513, 531, 758, 877, 932
MboI	GATC	7 cut(s)	4, 184, 511, 529, 756, 875, 930
MboII	GAAGA	3 cut(s)	179, 422, 755
MflI	RGATCY	5 cut(s)	4, 184, 529, 875, 930
MhlI	GDGCHC	2 cut(s)	368, 921
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	4 cut(s)	222, 598, 637, 661
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	3 cut(s)	732, 808, 844
MnlI	CCTC	8 cut(s)	140, 268, 366, 379, 438, 813, 886, 921
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	2 cut(s)	465, 597
Msp20I	TGGCCA	1 cut(s)	504
MspI	CCGG	2 cut(s)	197, 913
MspR9I	CCNGG	5 cut(s)	213, 534, 591, 825, 914
MvaI	CCWGG	4 cut(s)	213, 534, 591, 825
MvnI	CGCG	1 cut(s)	835
MwoI	GCNNNNNNNGC	2 cut(s)	329, 794
NciI	CCSGG	1 cut(s)	914
NdeII	GATC	7 cut(s)	4, 184, 511, 529, 756, 875, 930
NheI	GCTAGC	1 cut(s)	797
NlaIII	CATG	2 cut(s)	289, 509
NlaIV	GGNNCC	6 cut(s)	151, 365, 531, 777, 877, 932
NmuCI	GTSAC	3 cut(s)	724, 847, 868
NruI	TCGCGA	1 cut(s)	835
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	4 cut(s)	232, 310, 334, 523
PleI	GAGTC	3 cut(s)	731, 808, 844
PpsI	GAGTC	3 cut(s)	731, 808, 844
PpuMI	RGGWCCY	1 cut(s)	149
PshBI	ATTAAT	1 cut(s)	597
PsiI	TTATAA	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	149
Psp6I	CCWGG	4 cut(s)	211, 532, 589, 823
PspFI	CCCAGC	1 cut(s)	778
PspGI	CCWGG	4 cut(s)	211, 532, 589, 823
PspN4I	GGNNCC	6 cut(s)	151, 365, 531, 777, 877, 932
PspPI	GGNCC	3 cut(s)	149, 649, 775
PspPPI	RGGWCCY	1 cut(s)	149
PsuI	RGATCY	5 cut(s)	4, 184, 529, 875, 930
RruI	TCGCGA	1 cut(s)	835
RsaI	GTAC	2 cut(s)	583, 620
RsaNI	GTAC	2 cut(s)	582, 619
SaqAI	TTAA	2 cut(s)	465, 597
SatI	GCNGC	4 cut(s)	231, 309, 333, 522
Sau3AI	GATC	7 cut(s)	4, 184, 511, 529, 756, 875, 930
Sau96I	GGNCC	3 cut(s)	149, 649, 775
SchI	GAGTC	3 cut(s)	732, 808, 844
ScrFI	CCNGG	5 cut(s)	213, 534, 591, 825, 914
SduI	GDGCHC	2 cut(s)	368, 921
SexAI	ACCWGGT	2 cut(s)	589, 823
SfaNI	GCATC	2 cut(s)	538, 839
SfcI	CTRYAG	3 cut(s)	30, 72, 880
SinI	GGWCC	2 cut(s)	149, 649
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	4 cut(s)	222, 598, 637, 661
SsiI	CCGC	3 cut(s)	372, 551, 652
SspI	AATATT	2 cut(s)	135, 446
SspMI	CTAG	3 cut(s)	144, 206, 798
StyD4I	CCNGG	5 cut(s)	211, 532, 589, 823, 912
TaaI	ACNGT	6 cut(s)	34, 685, 712, 859, 884, 960
TaqI	TCGA	4 cut(s)	510, 659, 759, 792
TaqII	GACCGA	1 cut(s)	852
TasI	AATT	4 cut(s)	222, 598, 637, 661
TatI	WGTACW	2 cut(s)	581, 618
Tru1I	TTAA	2 cut(s)	465, 597
Tru9I	TTAA	2 cut(s)	465, 597
TscAI	CASTG	3 cut(s)	481, 852, 942
TseFI	GTSAC	3 cut(s)	724, 847, 868
TseI	GCWGC	4 cut(s)	230, 308, 332, 521
Tsp45I	GTSAC	3 cut(s)	724, 847, 868
TspDTI	ATGAA	2 cut(s)	270, 917
TspRI	CASTG	3 cut(s)	481, 852, 942
VpaK11BI	GGWCC	2 cut(s)	149, 649
VspI	ATTAAT	1 cut(s)	597
XapI	RAATTY	1 cut(s)	661
XspI	CTAG	3 cut(s)	144, 206, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.