Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0007699

Physical Location & Seq

Genomic Coordinates Forward (+)

25214957 .. 25216854

Gene Structure 1898 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAGCTTTCGGGATCTGGAAGCGGGTCGGGGCACCAATTATTCCCGGCGAGGAGACCTCATCAATGGAAAGAAGGACCCCACCCAAGCTGTGGCCTCCGGCATTTTCCAGATCAACACCGCCGTATCCACCTTCCAGAGGCTCGTCAACACCCTCGGCACCCCCAAAGACACGCCGGACCTCCGCGAAAAGCTGCACAAGACAAGACTACATATCGGGCAATTGGTGAAGGATACTTCAGAAAAACTTAAACAAGTCAGCGAAAGAGATCATCATACCGAAGTTAATGCAAGCAAGAAGATTACGGATGCTAAGCTTGCAAAAGATTTTCAAGCAGTGCTGAGAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGAGAAACAACATATGCTCCTTTTGTTCCTCAAGCAGTTCTTCCGTCCAGTTACACCGCTAGCGAGATAGATGTAAACTCAGACAAAAGTCCAGAACAGCGTGCTCTCCTTGTGGAATCTAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0000325 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006886 GO:0006906 GO:0006996 GO:0008104 GO:0008150 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009657 GO:0009660 GO:0009705 GO:0009959 GO:0009987 GO:0010118 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0032991 GO:0033036 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048278 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0098588 GO:0098796 GO:0098805 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 ko04145 map04130 map04145

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin_2

Protein Analysis

169

Amino Acids

18.86

Weight (kDa)

9.61

Isoelectric Point (pI)

37.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin_2	PF14523	28 - 157	2e-38	Syntaxin-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007699)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17730 AT4G17730 AT5G46860
fragaria_vesca	FvH4_5g22860 FvH4_5g22860
malus_domestica	MD06G1038300.v1.1 MD16G1270600.v1.1
prunus_persica	Prupe.5G030000_v2.0.a1 Prupe.5G030000_v2.0.a1
pyrus_communis	pycom06g03200 pycom16g23960
rosa_chinensis	RchiOBHm_Chr7g0211551
rosa_laevigata	RLG00000002929 RLG00000002999
rosa_multiflora	Rmu_co8509339.1_g000001 Rmu_sc0011240.1_g000011 Rmu_sc0012097.1_g000010
rosa_roxburghii	Rroxscaffold_3G00247770
rosa_rugosa	Rorug07G0125900
rosa_samantha	Rh7AG258100 Rh7BG252300 Rh7CG275200 Rh7DG265700
rosa_wichuraiana	Rw7G022080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 158
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccII	CGCG	1 cut(s)	186
AciI	CCGC	4 cut(s)	23, 120, 184, 435
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	347
AcuI	CTGAAG	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	91, 138
AgsI	TTSAA	1 cut(s)	332
AluBI	AGCT	5 cut(s)	6, 89, 193, 316, 374
AluI	AGCT	5 cut(s)	6, 89, 193, 316, 374
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	21
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	193, 371
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	76, 178
AsuC2I	CCSGG	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	238
AsuNHI	GCTAGC	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	76, 178
BaeGI	GKGCMC	1 cut(s)	35
BaeI	ACNNNNGTAYC	2 cut(s)	108, 141
BanI	GGYRCC	2 cut(s)	32, 158
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	2 cut(s)	180, 383
BceAI	ACGGC	1 cut(s)	107
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciVI	GTATCC	2 cut(s)	136, 226
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	48
BfaI	CTAG	2 cut(s)	438, 498
BfuI	GTATCC	2 cut(s)	136, 226
BisI	GCNGC	2 cut(s)	194, 372
BlpI	GCTNAGC	1 cut(s)	312
BlsI	GCNGC	2 cut(s)	195, 373
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	76, 178
BmgT120I	GGNCC	2 cut(s)	76, 178
BmiI	GGNNCC	3 cut(s)	34, 78, 160
BmrFI	CCNGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	298
BmtI	GCTAGC	1 cut(s)	441
BoxI	GACNNNNGTC	1 cut(s)	465
BplI	GAGNNNNNCTC	2 cut(s)	42, 74
Bpu1102I	GCTNAGC	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	393
BpuMI	CCSGG	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 138
Bse1I	ACTGG	1 cut(s)	426
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	91, 138
BseMII	CTCAG	3 cut(s)	332, 366, 471
BseNI	ACTGG	1 cut(s)	426
BseRI	GAGGAG	1 cut(s)	66
BseSI	GKGCMC	1 cut(s)	35
BseXI	GCAGC	2 cut(s)	180, 383
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	2 cut(s)	32, 158
BsiHKAI	GWGCWC	1 cut(s)	484
BsiSI	CCGG	3 cut(s)	46, 99, 176
BslI	CCNNNNNNNGG	2 cut(s)	91, 138
BsmAI	GTCTC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	35, 484
Bsp143I	GATC	3 cut(s)	13, 111, 268
Bsp1720I	GCTNAGC	1 cut(s)	312
BspACI	CCGC	4 cut(s)	23, 120, 184, 435
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	3 cut(s)	333, 367, 470
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	3 cut(s)	34, 78, 160
BspOI	GCTAGC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	21
BspT107I	GGYRCC	2 cut(s)	32, 158
BspTNI	GGTCTC	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	3 cut(s)	13, 111, 268
BstC8I	GCNNGC	4 cut(s)	292, 318, 439, 480
BstDEI	CTNAG	4 cut(s)	312, 341, 375, 457
BstENI	CCTNNNNNAGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	313
BstFNI	CGCG	1 cut(s)	186
BstKTI	GATC	3 cut(s)	16, 114, 271
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	13, 111, 268
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	44
BstSLI	GKGCMC	1 cut(s)	35
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	180, 383
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BsuI	GTATCC	2 cut(s)	136, 226
BsuRI	GGCC	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	313
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	4 cut(s)	292, 318, 439, 480
Cfr13I	GGNCC	2 cut(s)	76, 178
CviJI	RGCY	8 cut(s)	6, 89, 95, 142, 193, 316, 359, 374
CviKI_1	RGCY	8 cut(s)	6, 89, 95, 142, 193, 316, 359, 374
DdeI	CTNAG	4 cut(s)	312, 341, 375, 457
DpnI	GATC	3 cut(s)	15, 113, 270
DpnII	GATC	3 cut(s)	13, 111, 268
Eco31I	GGTCTC	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	76, 178
Eco57I	CTGAAG	1 cut(s)	222
EcoNI	CCTNNNNNAGG	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	76
FaiI	YATR	4 cut(s)	213, 276, 391, 393
FalI	AAGNNNNNCTT	2 cut(s)	402, 434
FauI	CCCGC	1 cut(s)	16
FauNDI	CATATG	1 cut(s)	391
Fnu4HI	GCNGC	2 cut(s)	194, 372
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	194, 372
FspBI	CTAG	2 cut(s)	438, 498
GluI	GCNGC	2 cut(s)	194, 372
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	3 cut(s)	46, 99, 176
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	314
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	3 cut(s)	46, 99, 176
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	2 cut(s)	148, 454
Hpy188I	TCNGA	3 cut(s)	241, 354, 460
Hpy188III	TCNNGA	6 cut(s)	11, 17, 109, 136, 470, 498
Hpy8I	GTNNAC	2 cut(s)	148, 454
HpyAV	CCTTC	5 cut(s)	67, 142, 223, 349, 495
HpyCH4V	TGCA	4 cut(s)	196, 290, 320, 371
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	4 cut(s)	312, 341, 375, 457
Kzo9I	GATC	3 cut(s)	13, 111, 268
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	8 cut(s)	2, 59, 112, 122, 149, 189, 439, 483
Lsp1109I	GCAGC	2 cut(s)	180, 383
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	438, 498
MaeIII	GTNAC	1 cut(s)	428
MalI	GATC	3 cut(s)	15, 113, 270
MboI	GATC	3 cut(s)	13, 111, 268
MboII	GAAGA	2 cut(s)	310, 410
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	2 cut(s)	35, 484
MluCI	AATT	3 cut(s)	37, 221, 347
MnlI	CCTC	7 cut(s)	44, 68, 106, 132, 164, 191, 417
MseI	TTAA	2 cut(s)	249, 285
MspA1I	CMGCKG	1 cut(s)	374
MspI	CCGG	3 cut(s)	46, 99, 176
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	317
NciI	CCSGG	1 cut(s)	46
NdeI	CATATG	1 cut(s)	391
NdeII	GATC	3 cut(s)	13, 111, 268
NheI	GCTAGC	1 cut(s)	437
NlaIV	GGNNCC	3 cut(s)	34, 78, 160
NmeAIII	GCCGAG	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	494
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	195, 373
PpuMI	RGGWCCY	1 cut(s)	76
PshAI	GACNNNNGTC	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	3 cut(s)	34, 78, 160
PspPI	GGNCC	2 cut(s)	76, 178
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	374
SaqAI	TTAA	2 cut(s)	249, 285
SatI	GCNGC	2 cut(s)	194, 372
Sau3AI	GATC	3 cut(s)	13, 111, 268
Sau96I	GGNCC	2 cut(s)	76, 178
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	35, 484
SetI	ASST	9 cut(s)	8, 60, 91, 134, 183, 195, 318, 376, 506
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	2 cut(s)	76, 178
SmlI	CTYRAG	1 cut(s)	408
SmoI	CTYRAG	1 cut(s)	408
Sse9I	AATT	3 cut(s)	37, 221, 347
SsiI	CCGC	4 cut(s)	23, 120, 184, 435
SspMI	CTAG	2 cut(s)	438, 498
StyD4I	CCNGG	1 cut(s)	44
TasI	AATT	3 cut(s)	37, 221, 347
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	2 cut(s)	249, 285
Tru9I	TTAA	2 cut(s)	249, 285
TscAI	CASTG	1 cut(s)	342
TseI	GCWGC	2 cut(s)	193, 371
TspGWI	ACGGA	2 cut(s)	320, 411
TspRI	CASTG	1 cut(s)	342
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	2 cut(s)	76, 178
XagI	CCTNNNNNAGG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	347
XbaI	TCTAGA	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	88
XspI	CTAG	2 cut(s)	438, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.