pycom16g24850

Protein transport protein Sec61 subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0003532
Physical Location & Seq
Forward (+)
26488727 .. 26489057
331 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 210 bp
ATGGACGCCATCGACTCAGTGGTAGATCCGATCAGAGAGTTCTCCAAGGACAGCATTCGCCTCGTCAAGCGCTGCCACAAGCCCGATCGCAAAGAATTCTCCAAGGTCGCGCTTCGGACAGCGATTGGGTTCGTGGTGATGGGATTCGTTGGGTTCTTCGTGAAGCTGATCTTCATCCCCATCAACAACATCATCGTCGGATCTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
SecE

Protein Analysis

70

Amino Acids

7.78

Weight (kDa)

9.74

Isoelectric Point (pI)

24.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SecE PF00584 13 - 65 4.1e-14 SecE/Sec61-gamma subunits of protein translocation complex
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 110
AclWI GGATC 2 cut(s) 20, 208
AcsI RAATTY 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 6
AfeI AGCGCT 1 cut(s) 71
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
AlwI GGATC 2 cut(s) 20, 208
Aor51HI AGCGCT 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 95
AspLEI GCGC 2 cut(s) 72, 112
AsuHPI GGTGA 1 cut(s) 148
BbvI GCAGC 1 cut(s) 59
BccI CCATC 3 cut(s) 17, 133, 188
BcgI CGANNNNNNTGC 2 cut(s) 43, 77
BfoI RGCGCY 1 cut(s) 73
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 173
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 2 cut(s) 45, 102
Bse8I GATNNNNATC 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 45, 102
BseGI GGATG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 173
BseMII CTCAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 88
BsiEI CGRYCG 1 cut(s) 88
BsmI GAATGC 1 cut(s) 54
Bsp143I GATC 5 cut(s) 25, 30, 85, 168, 200
BspCNI CTCAG 1 cut(s) 29
BspFNI CGCG 1 cut(s) 110
BspPI GGATC 2 cut(s) 20, 208
BssECI CCNNGG 2 cut(s) 45, 102
BssMI GATC 5 cut(s) 25, 30, 85, 168, 200
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 45, 102
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 1 cut(s) 16
BstF5I GGATG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 110
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 2 cut(s) 72, 112
BstKTI GATC 5 cut(s) 28, 33, 88, 171, 203
BstMBI GATC 5 cut(s) 25, 30, 85, 168, 200
BstMCI CGRYCG 1 cut(s) 88
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 1 cut(s) 59
BstX2I RGATCY 2 cut(s) 25, 200
BstYI RGATCY 2 cut(s) 25, 200
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 24
CfoI GCGC 2 cut(s) 72, 112
CseI GACGC 1 cut(s) 14
CviJI RGCY 2 cut(s) 82, 166
CviKI_1 RGCY 2 cut(s) 82, 166
DdeI CTNAG 1 cut(s) 16
DpnI GATC 5 cut(s) 27, 32, 87, 170, 202
DpnII GATC 5 cut(s) 25, 30, 85, 168, 200
Eco130I CCWWGG 2 cut(s) 45, 102
Eco47III AGCGCT 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 45, 102
ErhI CCWWGG 2 cut(s) 45, 102
FalI AAGNNNNNCTT 2 cut(s) 155, 187
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 73
GlaI GCGC 2 cut(s) 71, 111
GluI GCNGC 1 cut(s) 73
HaeII RGCGCY 1 cut(s) 73
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 72, 112
Hin1I GRCGYC 1 cut(s) 6
Hin6I GCGC 2 cut(s) 70, 110
HinP1I GCGC 2 cut(s) 70, 110
HinfI GANTC 2 cut(s) 14, 144
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 4 cut(s) 30, 35, 117, 200
Hpy188III TCNNGA 1 cut(s) 160
Hpy99I CGWCG 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 16
Hsp92I GRCGYC 1 cut(s) 6
HspAI GCGC 2 cut(s) 70, 110
Kzo9I GATC 5 cut(s) 25, 30, 85, 168, 200
Lsp1109I GCAGC 1 cut(s) 59
MalI GATC 5 cut(s) 27, 32, 87, 170, 202
MboI GATC 5 cut(s) 25, 30, 85, 168, 200
MboII GAAGA 2 cut(s) 148, 163
MflI RGATCY 2 cut(s) 25, 200
MluCI AATT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 178
MnlI CCTC 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 54
MvnI CGCG 1 cut(s) 110
NdeII GATC 5 cut(s) 25, 30, 85, 168, 200
PctI GAATGC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 1 cut(s) 74
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
PsuI RGATCY 2 cut(s) 25, 200
PvuI CGATCG 1 cut(s) 88
SatI GCNGC 1 cut(s) 73
Sau3AI GATC 5 cut(s) 25, 30, 85, 168, 200
SchI GAGTC 1 cut(s) 8
SetI ASST 2 cut(s) 108, 168
SgeI CNNG 9 cut(s) 58, 74, 79, 91, 95, 115, 121, 145, 172
Sse9I AATT 1 cut(s) 95
StyI CCWWGG 2 cut(s) 45, 102
TaqI TCGA 1 cut(s) 12
TasI AATT 1 cut(s) 95
TfiI GAWTC 1 cut(s) 144
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 72
TspDTI ATGAA 1 cut(s) 163
TspRI CASTG 1 cut(s) 24
XapI RAATTY 1 cut(s) 95
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.