Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008381

Physical Location & Seq

Genomic Coordinates Reverse (-)

769083 .. 769613

Gene Structure 531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGAAAATGGATTGTTGGTTTTGCTTGTGCCACAAGAAACATAAAATGCAGGATTGTTGTTCGCTTTCGTTTTGAACTTTTTGCGACTTTGATGGCCTCCCGTGCAGATTTTACTCCATCTCGCGGCAGCACTCCTGTCCATCAGAACTTACCCGCTGGTTCCTCTCTAATCGACAAAACTCCTTTCGAGAACAGAATCCCTGTTTCCATTCCTGGTCCAACTCCAACACCAACAGAAAAGAAGAAGAAACTACTTGAACTTTTTTTTCAGGAGAGCTTCAAAGATAATGAAGACGCGGACAATGAAGTAAAACCGCCAACTGCAGTCAACCTCCCTCCAAAGTTTGTCAAAGGAACGGATTCCGTGTGTAGTAGCGAGAGGACAATAAGTGGAGACGTTCTAACTGAGATTGAGACGAAGAAGCCATTTAGGACCTCGCAGTGCTGCCTTCCGAGCTTAGTTTCTTGCCGCAGCCCGAGTCAGAGGAAGAAGATGAGCCCTGCCATTGCTGTAGGTGATAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.47

Weight (kDa)

9.56

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008381)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27210 AT5G40860 AT5G40860
fragaria_vesca	FvH4_6g53190 FvH4_6g53190 FvH4_6g53190
malus_domestica	MD09G1013200.v1.1 MD17G1013900.v1.1
prunus_persica	Prupe.3G303900_v2.0.a1 Prupe.3G303900_v2.0.a1
pyrus_communis	pycom111g01120 pycom17g01100
rosa_chinensis	RchiOBHm_Chr2g0175231
rosa_laevigata	RLG00000022313
rosa_multiflora	Rmu_sc0015795.1_g000003
rosa_roxburghii	Rroxscaffold_2G00077470
rosa_rugosa	Rorug02G0581800 Rorug02G0581900
rosa_samantha	Rh2AG662300 Rh2BG673500 Rh2CG636700 Rh2DG687400
rosa_wichuraiana	Rw2G054320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	126, 299
AciI	CCGC	5 cut(s)	126, 156, 299, 317, 472
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	3 cut(s)	77, 260, 283
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	2 cut(s)	279, 459
AluI	AGCT	2 cut(s)	279, 459
Alw26I	GTCTC	2 cut(s)	390, 410
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	1 cut(s)	96
ApeKI	GCWGC	3 cut(s)	129, 447, 474
Asp700I	GAANNNNTTC	1 cut(s)	361
AspS9I	GGNCC	2 cut(s)	218, 435
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	478
AvaII	GGWCC	2 cut(s)	218, 435
BanII	GRGCYC	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	141, 434, 486
BccI	CCATC	3 cut(s)	88, 127, 150
BciT130I	CCWGG	1 cut(s)	216
BcoDI	GTCTC	2 cut(s)	390, 410
BfmI	CTRYAG	2 cut(s)	324, 513
BisI	GCNGC	5 cut(s)	127, 130, 448, 472, 475
BlsI	GCNGC	5 cut(s)	128, 131, 449, 473, 476
Bme1390I	CCNGG	1 cut(s)	216
Bme18I	GGWCC	2 cut(s)	218, 435
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	218, 435
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	216
BpiI	GAAGAC	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	216
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMI	GCAATG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	141, 434, 486
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	2 cut(s)	126, 299
BshFI	GGCC	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	478
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	2 cut(s)	390, 410
BsmBI	CGTCTC	2 cut(s)	390, 410
BsnI	GGCC	1 cut(s)	98
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	503
BspACI	CCGC	5 cut(s)	126, 156, 299, 317, 472
BspANI	GGCC	1 cut(s)	98
BspCNI	CTCAG	1 cut(s)	400
BspFNI	CGCG	2 cut(s)	126, 299
BspLI	GGNNCC	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	507
Bst2UI	CCWGG	1 cut(s)	216
BstDEI	CTNAG	2 cut(s)	408, 460
BstFNI	CGCG	2 cut(s)	126, 299
BstMAI	GTCTC	2 cut(s)	390, 410
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 456
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	1 cut(s)	214
BstSFI	CTRYAG	2 cut(s)	324, 513
BstUI	CGCG	2 cut(s)	126, 299
BstV1I	GCAGC	3 cut(s)	141, 434, 486
BstV2I	GAAGAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	98
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	1 cut(s)	449
Cfr13I	GGNCC	2 cut(s)	218, 435
CseI	GACGC	1 cut(s)	305
CviJI	RGCY	6 cut(s)	98, 279, 427, 459, 477, 501
CviKI_1	RGCY	6 cut(s)	98, 279, 427, 459, 477, 501
DdeI	CTNAG	2 cut(s)	408, 460
Eco24I	GRGCYC	1 cut(s)	503
Eco47I	GGWCC	2 cut(s)	218, 435
Eco88I	CYCGRG	1 cut(s)	478
EcoO109I	RGGNCCY	1 cut(s)	435
EcoRII	CCWGG	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	503
Esp3I	CGTCTC	2 cut(s)	390, 410
FaiI	YATR	1 cut(s)	44
FauI	CCCGC	1 cut(s)	163
Fnu4HI	GCNGC	5 cut(s)	127, 130, 448, 472, 475
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	5 cut(s)	127, 130, 448, 472, 475
GluI	GCNGC	5 cut(s)	127, 130, 448, 472, 475
HaeIII	GGCC	1 cut(s)	98
HgaI	GACGC	1 cut(s)	305
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	198, 362, 481
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	3 cut(s)	147, 456, 486
Hpy188III	TCNNGA	2 cut(s)	190, 272
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	461
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	3 cut(s)	51, 107, 326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 456
HpyF3I	CTNAG	2 cut(s)	408, 460
HpySE526I	ACGT	1 cut(s)	399
LpnPI	CCDG	8 cut(s)	37, 144, 150, 201, 216, 228, 257, 516
Lsp1109I	GCAGC	3 cut(s)	141, 434, 486
MaeII	ACGT	1 cut(s)	399
MboII	GAAGA	6 cut(s)	256, 259, 305, 433, 502, 505
MhlI	GDGCHC	1 cut(s)	503
MlyI	GAGTC	1 cut(s)	490
MmeI	TCCRAC	2 cut(s)	245, 251
MnlI	CCTC	7 cut(s)	109, 175, 344, 348, 375, 448, 480
MroXI	GAANNNNTTC	1 cut(s)	361
MspA1I	CMGCKG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	216
MvnI	CGCG	2 cut(s)	126, 299
MwoI	GCNNNNNNNGC	2 cut(s)	104, 456
NlaIV	GGNNCC	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	198, 362
PkrI	GCNGC	5 cut(s)	128, 131, 449, 473, 476
PleI	GAGTC	1 cut(s)	489
PpsI	GAGTC	1 cut(s)	489
PpuMI	RGGWCCY	1 cut(s)	435
Psp5II	RGGWCCY	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	214
PspGI	CCWGG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	2 cut(s)	218, 435
PspPPI	RGGWCCY	1 cut(s)	435
PstI	CTGCAG	1 cut(s)	328
SatI	GCNGC	5 cut(s)	127, 130, 448, 472, 475
Sau96I	GGNCC	2 cut(s)	218, 435
SchI	GAGTC	1 cut(s)	490
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	503
SetI	ASST	7 cut(s)	281, 336, 402, 440, 461, 520, 529
SfcI	CTRYAG	2 cut(s)	324, 513
SinI	GGWCC	2 cut(s)	218, 435
SsiI	CCGC	5 cut(s)	126, 156, 299, 317, 472
StyD4I	CCNGG	1 cut(s)	214
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	2 cut(s)	174, 189
TauI	GCSGC	2 cut(s)	129, 474
TfiI	GAWTC	2 cut(s)	198, 362
TscAI	CASTG	1 cut(s)	449
TseI	GCWGC	3 cut(s)	129, 447, 474
TspDTI	ATGAA	2 cut(s)	306, 321
TspGWI	ACGGA	2 cut(s)	355, 374
TspRI	CASTG	1 cut(s)	449
VpaK11BI	GGWCC	2 cut(s)	218, 435
XmnI	GAANNNNTTC	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.