Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002814

Physical Location & Seq

Genomic Coordinates Forward (+)

1147359 .. 1149124

Gene Structure 1766 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCTCAGGTGGCGGTAGATGTTCCCAAGGGGGGATTCAGTTTTGATCTTTGTCGAAGAAACGACATGCTTGCAAAGAAGGGAGTTCAGCAACCATCTTACAGGAAGACAGGAACCACCATTGTTGGTTTGATTTTTCAGGATGGTGTCATTCTTGGAGCTGATACAAGGGCCACCGAAGGACCCATTGTTTGTGATAAGAACTGTGAAAAGATCCATTATATGGCACCCAATATCTACTGCTGCGGAGCTGGAACTGCTGCTGATACAGAGGCTGTAACAGATATGGTGAGCTCACAGCTGCAACTGCATCGCTACCATACTGGTCGCGAATCCCGGGTTGTTACAGCCTTGACTTTGCTCAAGAAACACCTTTTCAATTACCAAGGTCATGTGTCAGCTGCTTTGGTGCTTGGGGGGGTCGATGTCACTGGACCCCATCTGCACACTATATATCCCCATGGATCGACCGATACGCTGCCATTTGCTACAATGGGTTCTGGTTCTCTTGCTGCGATGGCCATGTTCGAGTCTAAATACAAGGAAGGCATGACTAGGGATGAAGGCATAAAGCTTGTAACCGAAGCAATATGCTCTGGAATTTTCAATGACTTGGGAAGTGGAAGCAATGTTGATGTTTGTGTGATAACTAAGGGACACAAGGAATACCTGAGGAACCACTTGGTGCCCACCCCTCGTACCTATGTCAGTGCAGAAGGCTATAAGTTTACCAAGAAGACTGAGGTTCTCTTCACAAAGATCGCTCCGTTGACCGAGAAGGTGGTAGTGTTAGAAGGAGGCGATGCAATGGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019774 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome

Protein Analysis

273

Amino Acids

29.45

Weight (kDa)

6.79

Isoelectric Point (pI)

28.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome	PF00227	36 - 216	2.6e-50	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27430 AT3G27430 AT3G27430 AT5G40580 AT5G40580 AT5G40580 AT5G40580
fragaria_vesca	FvH4_6g52030 FvH4_6g52030
malus_domestica	MD09G1020800.v1.1
prunus_persica	Prupe.3G295500_v2.0.a1 Prupe.3G295500_v2.0.a1
pyrus_communis	pycom111g01750 pycom17g01770
rosa_chinensis	RchiOBHm_Chr2g0173491 RchiOBHm_Chr2g0173541 RchiOBHm_Chr3g0468681
rosa_laevigata	RLG00000022199
rosa_multiflora	Rmu_sc0002538.1_g000026 Rmu_sc0011538.1_g000006 Rmu_sc0025203.1_g000001 Rmu_sc0033138.1_g000001
rosa_roxburghii	Rroxscaffold_2G00078800 Rroxscaffold_2G00078810 Rroxscaffold_6G00412650
rosa_rugosa	Rorug02G0571200
rosa_samantha	Rh2AG649400 Rh2AG649900 Rh2BG660000 Rh2BG660300 Rh2CG625300 Rh2DG675100 Rh2DG675700 Rh3AG145100 Rh3BG167600 Rh3DG166400
rosa_wichuraiana	Rw2G053320 Rw2G053340 Rw3G013680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	226, 685
AccB7I	CCANNNNNTGG	1 cut(s)	223
AccII	CGCG	1 cut(s)	330
AciI	CCGC	2 cut(s)	14, 246
AclWI	GGATC	2 cut(s)	208, 472
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	600
AdeI	CACNNNGTG	1 cut(s)	685
AfaI	GTAC	1 cut(s)	700
AfiI	CCNNNNNNNGG	2 cut(s)	32, 223
AgsI	TTSAA	2 cut(s)	379, 607
AjuI	GAANNNNNNNTTGG	2 cut(s)	20, 52
AluBI	AGCT	6 cut(s)	161, 251, 294, 301, 401, 574
AluI	AGCT	6 cut(s)	161, 251, 294, 301, 401, 574
Alw21I	GWGCWC	1 cut(s)	296
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	208, 472
AlwNI	CAGNNNCTG	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	2 cut(s)	171, 519
ApeKI	GCWGC	6 cut(s)	243, 260, 301, 401, 478, 512
ApoI	RAATTY	1 cut(s)	600
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AspS9I	GGNCC	3 cut(s)	171, 182, 434
AsuC2I	CCSGG	2 cut(s)	337, 338
AsuHPI	GGTGA	1 cut(s)	301
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	2 cut(s)	182, 434
AxyI	CCTNAGG	1 cut(s)	671
BaeGI	GKGCMC	1 cut(s)	690
BalI	TGGCCA	1 cut(s)	521
BanI	GGYRCC	2 cut(s)	226, 685
BanII	GRGCYC	1 cut(s)	296
BbsI	GAAGAC	2 cut(s)	113, 743
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	6 cut(s)	230, 247, 288, 388, 465, 499
BccI	CCATC	4 cut(s)	103, 137, 447, 511
BcgI	CGANNNNNNTGC	4 cut(s)	53, 87, 293, 327
BcnI	CCSGG	2 cut(s)	337, 338
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	555
BisI	GCNGC	6 cut(s)	244, 261, 302, 402, 479, 513
BlsI	GCNGC	6 cut(s)	245, 262, 303, 403, 480, 514
Bme1390I	CCNGG	2 cut(s)	337, 338
Bme18I	GGWCC	2 cut(s)	182, 434
BmeT110I	CYCGRG	1 cut(s)	336
BmgT120I	GGNCC	3 cut(s)	171, 182, 434
BmiI	GGNNCC	6 cut(s)	115, 184, 228, 436, 677, 687
BmrFI	CCNGG	2 cut(s)	337, 338
BmsI	GCATC	2 cut(s)	319, 793
BpiI	GAAGAC	2 cut(s)	113, 743
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	2 cut(s)	337, 338
BsaJI	CCNNGG	4 cut(s)	27, 336, 385, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	32, 223
Bse1I	ACTGG	2 cut(s)	328, 436
Bse21I	CCTNAGG	1 cut(s)	671
Bse3DI	GCAATG	2 cut(s)	634, 813
BseDI	CCNNGG	4 cut(s)	27, 336, 385, 460
BseGI	GGATG	2 cut(s)	148, 565
BseLI	CCNNNNNNNGG	2 cut(s)	32, 223
BseMI	GCAATG	2 cut(s)	634, 813
BseMII	CTCAG	3 cut(s)	20, 662, 732
BseNI	ACTGG	2 cut(s)	328, 436
BseSI	GKGCMC	1 cut(s)	690
BseXI	GCAGC	6 cut(s)	230, 247, 288, 388, 465, 499
BsgI	GTGCAG	2 cut(s)	428, 732
Bsh1236I	CGCG	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	471
BshFI	GGCC	2 cut(s)	173, 521
BshNI	GGYRCC	2 cut(s)	226, 685
BsiEI	CGRYCG	1 cut(s)	471
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	669
BslI	CCNNNNNNNGG	2 cut(s)	32, 223
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	1 cut(s)	669
BsnI	GGCC	2 cut(s)	173, 521
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	2 cut(s)	296, 690
Bsp143I	GATC	4 cut(s)	46, 213, 464, 759
Bsp19I	CCATGG	1 cut(s)	460
Bsp68I	TCGCGA	1 cut(s)	330
BspACI	CCGC	2 cut(s)	14, 246
BspANI	GGCC	2 cut(s)	173, 521
BspCNI	CTCAG	3 cut(s)	19, 663, 733
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	6 cut(s)	115, 184, 228, 436, 677, 687
BspPI	GGATC	2 cut(s)	208, 472
BspT107I	GGYRCC	2 cut(s)	226, 685
BsrDI	GCAATG	2 cut(s)	634, 813
BsrI	ACTGG	2 cut(s)	328, 436
BssECI	CCNNGG	4 cut(s)	27, 336, 385, 460
BssMI	GATC	4 cut(s)	46, 213, 464, 759
BssT1I	CCWWGG	3 cut(s)	27, 385, 460
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	755
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	6, 651, 671, 741
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	2 cut(s)	148, 565
BstFNI	CGCG	1 cut(s)	330
BstKTI	GATC	4 cut(s)	49, 216, 467, 762
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	46, 213, 464, 759
BstMCI	CGRYCG	1 cut(s)	471
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 307, 518
BstNSI	RCATGY	1 cut(s)	70
BstSCI	CCNGG	2 cut(s)	335, 336
BstSLI	GKGCMC	1 cut(s)	690
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	6 cut(s)	230, 247, 288, 388, 465, 499
BstV2I	GAAGAC	2 cut(s)	113, 743
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
Bsu36I	CCTNAGG	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	173, 521
BtgI	CCRYGG	1 cut(s)	460
BtgZI	GCGATG	2 cut(s)	296, 530
BtsCI	GGATG	2 cut(s)	148, 565
BtsIMutI	CAGTG	2 cut(s)	429, 715
BtuMI	TCGCGA	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	72
CaiI	CAGNNNCTG	1 cut(s)	275
Cfr13I	GGNCC	3 cut(s)	171, 182, 434
Cfr9I	CCCGGG	1 cut(s)	336
Csp6I	GTAC	1 cut(s)	699
CspCI	CAANNNNNGTGG	2 cut(s)	106, 141
CviAII	CATG	5 cut(s)	67, 392, 461, 523, 550
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	4 cut(s)	6, 651, 671, 741
DpnI	GATC	4 cut(s)	48, 215, 466, 761
DpnII	GATC	4 cut(s)	46, 213, 464, 759
DraIII	CACNNNGTG	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	755
EarI	CTCTTC	1 cut(s)	755
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	3 cut(s)	27, 385, 460
Eco24I	GRGCYC	1 cut(s)	296
Eco47I	GGWCC	2 cut(s)	182, 434
Eco53kI	GAGCTC	1 cut(s)	294
Eco81I	CCTNAGG	1 cut(s)	671
Eco88I	CYCGRG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	182
EcoT14I	CCWWGG	3 cut(s)	27, 385, 460
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	3 cut(s)	27, 385, 460
FaeI	CATG	5 cut(s)	70, 395, 464, 526, 553
FaqI	GGGAC	1 cut(s)	669
FatI	CATG	5 cut(s)	66, 391, 460, 522, 549
Fnu4HI	GCNGC	6 cut(s)	244, 261, 302, 402, 479, 513
FokI	GGATG	2 cut(s)	155, 572
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	6 cut(s)	244, 261, 302, 402, 479, 513
FspBI	CTAG	1 cut(s)	555
GluI	GCNGC	6 cut(s)	244, 261, 302, 402, 479, 513
HaeIII	GGCC	2 cut(s)	173, 521
HapII	CCGG	1 cut(s)	337
Hin1II	CATG	5 cut(s)	70, 395, 464, 526, 553
HincII	GTYRAC	1 cut(s)	771
HindII	GTYRAC	1 cut(s)	771
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	3 cut(s)	36, 332, 530
HpaII	CCGG	1 cut(s)	337
HphI	GGTGA	1 cut(s)	301
Hpy166II	GTNNAC	2 cut(s)	729, 771
Hpy188III	TCNNGA	4 cut(s)	140, 329, 364, 597
Hpy8I	GTNNAC	2 cut(s)	729, 771
HpyAV	CCTTC	7 cut(s)	73, 173, 539, 557, 710, 772, 788
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	6 cut(s)	74, 304, 310, 445, 713, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 307, 518
HpyF3I	CTNAG	4 cut(s)	6, 651, 671, 741
Hsp92II	CATG	5 cut(s)	70, 395, 464, 526, 553
Kzo9I	GATC	4 cut(s)	46, 213, 464, 759
LmnI	GCTCC	3 cut(s)	158, 248, 769
Lsp1109I	GCAGC	6 cut(s)	230, 247, 288, 388, 465, 499
LweI	GCATC	2 cut(s)	319, 793
MaeI	CTAG	1 cut(s)	555
MaeIII	GTNAC	4 cut(s)	277, 343, 427, 577
MalI	GATC	4 cut(s)	48, 215, 466, 761
MboI	GATC	4 cut(s)	46, 213, 464, 759
MboII	GAAGA	4 cut(s)	69, 118, 742, 748
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	296, 690
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	2 cut(s)	379, 600
MluNI	TGGCCA	1 cut(s)	521
MlyI	GAGTC	1 cut(s)	539
MnlI	CCTC	5 cut(s)	265, 666, 705, 736, 791
Mox20I	TGGCCA	1 cut(s)	521
MscI	TGGCCA	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	301, 401
MspI	CCGG	1 cut(s)	337
MspR9I	CCNGG	2 cut(s)	337, 338
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	3 cut(s)	257, 307, 518
NciI	CCSGG	2 cut(s)	337, 338
NcoI	CCATGG	1 cut(s)	460
NdeII	GATC	4 cut(s)	46, 213, 464, 759
NlaIII	CATG	5 cut(s)	70, 395, 464, 526, 553
NlaIV	GGNNCC	6 cut(s)	115, 184, 228, 436, 677, 687
NmuCI	GTSAC	1 cut(s)	427
NruI	TCGCGA	1 cut(s)	330
NspI	RCATGY	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	36, 332
PflMI	CCANNNNNTGG	1 cut(s)	223
PkrI	GCNGC	6 cut(s)	245, 262, 303, 403, 480, 514
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	296
Psp5II	RGGWCCY	1 cut(s)	182
PspN4I	GGNNCC	6 cut(s)	115, 184, 228, 436, 677, 687
PspPI	GGNCC	3 cut(s)	171, 182, 434
PspPPI	RGGWCCY	1 cut(s)	182
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	2 cut(s)	301, 401
RruI	TCGCGA	1 cut(s)	330
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	296
SatI	GCNGC	6 cut(s)	244, 261, 302, 402, 479, 513
Sau3AI	GATC	4 cut(s)	46, 213, 464, 759
Sau96I	GGNCC	3 cut(s)	171, 182, 434
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	2 cut(s)	337, 338
SduI	GDGCHC	2 cut(s)	296, 690
SfaNI	GCATC	2 cut(s)	319, 793
SinI	GGWCC	2 cut(s)	182, 434
SmaI	CCCGGG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	379, 600
SsiI	CCGC	2 cut(s)	14, 246
SspMI	CTAG	1 cut(s)	555
SstI	GAGCTC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	335, 336
StyI	CCWWGG	3 cut(s)	27, 385, 460
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	4 cut(s)	55, 423, 467, 528
TaqII	GACCGA	2 cut(s)	485, 788
TasI	AATT	2 cut(s)	379, 600
TfiI	GAWTC	2 cut(s)	36, 332
TscAI	CASTG	2 cut(s)	436, 715
TseFI	GTSAC	1 cut(s)	427
TseI	GCWGC	6 cut(s)	243, 260, 301, 401, 478, 512
Tsp45I	GTSAC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	1 cut(s)	756
TspMI	CCCGGG	1 cut(s)	336
TspRI	CASTG	2 cut(s)	436, 715
Van91I	CCANNNNNTGG	1 cut(s)	223
VpaK11BI	GGWCC	2 cut(s)	182, 434
XapI	RAATTY	1 cut(s)	600
XceI	RCATGY	1 cut(s)	70
XmaI	CCCGGG	1 cut(s)	336
XspI	CTAG	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.