Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009168

Physical Location & Seq

Genomic Coordinates Forward (+)

1974964 .. 1978570

Gene Structure 3607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGATAAAAAACCATGCAATAGTTCATCCCAGGATGTTGAAGTGAGAAAAGGGCCATGGACCATGGAAGAAGATTTGATTCTCATCAACTATATTGCAAATCATGGTGAAGGTGTATGGAACTCCCTAGCCAAATCTGCTGGTCTCAAACGTACTGGGAAGAGCTGCCGGCTCCGGTGGCTGAATTATCTGCGGCCTGATGTTCGGAGAGGCAACATCACACCAGAGGAACAACTTCTGATTATGGAACTGCATGCAAAGTGGGGTAACAGGTGGTCGAAAATCGCAAAACATTTACCGGGACGGACCGATAACGAAATCAAGAACTATTGGAGGACTAGAATTCAAAAACATATTAAGCAAGCTGAGAATATAACACCAGGACAAAGCTCTGAGGTGAATGATCAGGCTATCACAAGTCAAGTGTCCATCTCTAACACTGTGGACACGATGGATATTTCCCACTCCGCACCAACATACCAAGCAAATATGGATGCTTATCCTCCTCCTTTACCTGCTGATCAATCTAATGAAAGCTATTGGAGCATGGAGGATCTCTGGTCTCTGCAATTGCTAAATGGAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010476 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

196

Amino Acids

22.33

Weight (kDa)

6.53

Isoelectric Point (pI)

51.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	17 - 64	7.7e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	20 - 77	5.1e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	70 - 113	1e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	74 - 122	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009168)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27810 AT3G27810 AT5G40350 AT5G40350
fragaria_vesca	FvH4_6g50930
malus_domestica	MD09G1030500.v1.1 MD09G1030700.v1.1 MD17G1032300.v1.1 MD17G1032500.v1.1
prunus_persica	Prupe.3G286800_v2.0.a1 Prupe.3G286800_v2.0.a1
pyrus_communis	pycom111g02450 pycom17g03000
rosa_chinensis	RchiOBHm_Chr2g0172331
rosa_laevigata	RLG00000022104
rosa_multiflora	Rmu_sc0000467.1_g000012
rosa_roxburghii	Rroxscaffold_2G00079980
rosa_rugosa	Rorug02G0558700
rosa_samantha	Rh2BG647300 Rh2CG614200 Rh2DG662100
rosa_wichuraiana	Rw2G052470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	523
AciI	CCGC	2 cut(s)	193, 468
AclWI	GGATC	1 cut(s)	561
AcsI	RAATTY	1 cut(s)	342
AfaI	GTAC	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	41, 347
AjnI	CCWGG	2 cut(s)	30, 379
AluBI	AGCT	4 cut(s)	165, 365, 390, 537
AluI	AGCT	4 cut(s)	165, 365, 390, 537
Alw26I	GTCTC	2 cut(s)	149, 567
AlwI	GGATC	1 cut(s)	561
AoxI	GGCC	2 cut(s)	53, 194
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	1 cut(s)	342
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	3 cut(s)	53, 60, 306
AsuC2I	CCSGG	1 cut(s)	300
AsuHPI	GGTGA	2 cut(s)	119, 409
AvaII	GGWCC	2 cut(s)	60, 306
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	2 cut(s)	437, 445
BciT130I	CCWGG	2 cut(s)	32, 381
BclI	TGATCA	2 cut(s)	403, 520
BcnI	CCSGG	1 cut(s)	300
BcoDI	GTCTC	2 cut(s)	149, 567
BfaI	CTAG	2 cut(s)	128, 339
BfuAI	ACCTGC	1 cut(s)	523
BisI	GCNGC	2 cut(s)	166, 194
BlsI	GCNGC	2 cut(s)	167, 195
Bme1390I	CCNGG	3 cut(s)	32, 300, 381
Bme18I	GGWCC	2 cut(s)	60, 306
BmgT120I	GGNCC	3 cut(s)	53, 60, 306
BmiI	GGNNCC	1 cut(s)	173
BmrFI	CCNGG	3 cut(s)	32, 300, 381
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	1 cut(s)	484
BmuI	ACTGGG	1 cut(s)	165
BpuMI	CCSGG	1 cut(s)	300
BsaBI	GATNNNNATC	2 cut(s)	83, 498
BsaI	GGTCTC	2 cut(s)	149, 567
BsaJI	CCNNGG	3 cut(s)	30, 56, 63
BsaWI	WCCGGW	1 cut(s)	174
Bse118I	RCCGGY	1 cut(s)	168
Bse1I	ACTGG	1 cut(s)	160
Bse8I	GATNNNNATC	2 cut(s)	83, 498
BseBI	CCWGG	2 cut(s)	32, 381
BseDI	CCNNGG	3 cut(s)	30, 56, 63
BseGI	GGATG	3 cut(s)	26, 40, 499
BseJI	GATNNNNATC	2 cut(s)	83, 498
BseMII	CTCAG	2 cut(s)	357, 384
BseNI	ACTGG	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	152
BshFI	GGCC	2 cut(s)	55, 196
BsiSI	CCGG	3 cut(s)	169, 175, 299
BslFI	GGGAC	1 cut(s)	315
BsmAI	GTCTC	2 cut(s)	149, 567
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	55, 196
Bso31I	GGTCTC	2 cut(s)	149, 567
Bsp143I	GATC	3 cut(s)	403, 520, 553
Bsp19I	CCATGG	2 cut(s)	56, 63
BspACI	CCGC	2 cut(s)	193, 468
BspANI	GGCC	2 cut(s)	55, 196
BspCNI	CTCAG	2 cut(s)	358, 385
BspLI	GGNNCC	1 cut(s)	173
BspMI	ACCTGC	1 cut(s)	523
BspPI	GGATC	1 cut(s)	561
BspQI	GCTCTTC	1 cut(s)	155
BspTNI	GGTCTC	2 cut(s)	149, 567
BsrFI	RCCGGY	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	160
BssAI	RCCGGY	1 cut(s)	168
BssECI	CCNNGG	3 cut(s)	30, 56, 63
BssMI	GATC	3 cut(s)	403, 520, 553
BssT1I	CCWWGG	2 cut(s)	56, 63
Bst2UI	CCWGG	2 cut(s)	32, 381
Bst4CI	ACNGT	1 cut(s)	442
Bst6I	CTCTTC	1 cut(s)	155
BstC8I	GCNNGC	3 cut(s)	170, 255, 363
BstDEI	CTNAG	2 cut(s)	366, 393
BstDSI	CCRYGG	2 cut(s)	56, 63
BstF5I	GGATG	3 cut(s)	26, 40, 499
BstKTI	GATC	3 cut(s)	406, 523, 556
BstMAI	GTCTC	2 cut(s)	149, 567
BstMBI	GATC	3 cut(s)	403, 520, 553
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 178, 543
BstNI	CCWGG	2 cut(s)	32, 381
BstNSI	RCATGY	1 cut(s)	257
BstSCI	CCNGG	3 cut(s)	30, 298, 379
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	553
BsuRI	GGCC	2 cut(s)	55, 196
BtgI	CCRYGG	2 cut(s)	56, 63
BtsCI	GGATG	3 cut(s)	26, 40, 499
BtsIMutI	CAGTG	1 cut(s)	438
BveI	ACCTGC	1 cut(s)	523
Cac8I	GCNNGC	3 cut(s)	170, 255, 363
Cfr10I	RCCGGY	1 cut(s)	168
Cfr13I	GGNCC	3 cut(s)	53, 60, 306
CpoI	CGGWCCG	1 cut(s)	306
Csp6I	GTAC	1 cut(s)	153
CspI	CGGWCCG	1 cut(s)	306
CviAII	CATG	6 cut(s)	15, 57, 64, 104, 254, 547
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	366, 393
DpnI	GATC	3 cut(s)	405, 522, 555
DpnII	GATC	3 cut(s)	403, 520, 553
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	56, 63
Eco31I	GGTCTC	2 cut(s)	149, 567
Eco47I	GGWCC	2 cut(s)	60, 306
EcoRI	GAATTC	1 cut(s)	342
EcoRII	CCWGG	2 cut(s)	30, 379
EcoT14I	CCWWGG	2 cut(s)	56, 63
ErhI	CCWWGG	2 cut(s)	56, 63
FaeI	CATG	6 cut(s)	18, 60, 67, 107, 257, 550
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	6 cut(s)	14, 56, 63, 103, 253, 546
FbaI	TGATCA	2 cut(s)	403, 520
Fnu4HI	GCNGC	2 cut(s)	166, 194
FokI	GGATG	3 cut(s)	13, 47, 506
Fsp4HI	GCNGC	2 cut(s)	166, 194
FspBI	CTAG	2 cut(s)	128, 339
GluI	GCNGC	2 cut(s)	166, 194
HaeIII	GGCC	2 cut(s)	55, 196
HapII	CCGG	3 cut(s)	169, 175, 299
Hin1II	CATG	6 cut(s)	18, 60, 67, 107, 257, 550
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	3 cut(s)	169, 175, 299
HphI	GGTGA	2 cut(s)	119, 409
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	3 cut(s)	207, 240, 394
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	1 cut(s)	442
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	5 cut(s)	18, 98, 253, 257, 568
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 178, 543
HpyF3I	CTNAG	2 cut(s)	366, 393
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	6 cut(s)	18, 60, 67, 107, 257, 550
KroI	GCCGGC	1 cut(s)	168
KroNI	GCCGGC	1 cut(s)	170
Ksp22I	TGATCA	2 cut(s)	403, 520
Kzo9I	GATC	3 cut(s)	403, 520, 553
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	2 cut(s)	177, 543
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	128, 339
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	3 cut(s)	405, 522, 555
MboI	GATC	3 cut(s)	403, 520, 553
MboII	GAAGA	3 cut(s)	80, 83, 172
MfeI	CAATTG	1 cut(s)	569
MflI	RGATCY	1 cut(s)	553
MluCI	AATT	3 cut(s)	184, 342, 569
MnlI	CCTC	7 cut(s)	203, 220, 327, 388, 513, 516, 544
MroNI	GCCGGC	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	234
MseI	TTAA	1 cut(s)	357
MspI	CCGG	3 cut(s)	169, 175, 299
MspR9I	CCNGG	3 cut(s)	32, 300, 381
MunI	CAATTG	1 cut(s)	569
MvaI	CCWGG	2 cut(s)	32, 381
MwoI	GCNNNNNNNGC	3 cut(s)	137, 178, 543
NaeI	GCCGGC	1 cut(s)	170
NciI	CCSGG	1 cut(s)	300
NcoI	CCATGG	2 cut(s)	56, 63
NdeII	GATC	3 cut(s)	403, 520, 553
NgoMIV	GCCGGC	1 cut(s)	168
NlaIII	CATG	6 cut(s)	18, 60, 67, 107, 257, 550
NlaIV	GGNNCC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	257
PaeI	GCATGC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	170
PdmI	GAANNNNTTC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	167, 195
Psp6I	CCWGG	2 cut(s)	30, 379
PspGI	CCWGG	2 cut(s)	30, 379
PspN4I	GGNNCC	1 cut(s)	173
PspPI	GGNCC	3 cut(s)	53, 60, 306
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
Rsr2I	CGGWCCG	1 cut(s)	306
RsrII	CGGWCCG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	2 cut(s)	166, 194
Sau3AI	GATC	3 cut(s)	403, 520, 553
Sau96I	GGNCC	3 cut(s)	53, 60, 306
ScrFI	CCNGG	3 cut(s)	32, 300, 381
SetI	ASST	9 cut(s)	115, 154, 167, 275, 367, 392, 399, 517, 539
SfaNI	GCATC	1 cut(s)	484
SinI	GGWCC	2 cut(s)	60, 306
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	184, 342, 569
SsiI	CCGC	2 cut(s)	193, 468
SspMI	CTAG	2 cut(s)	128, 339
StyD4I	CCNGG	3 cut(s)	30, 298, 379
StyI	CCWWGG	2 cut(s)	56, 63
TaaI	ACNGT	1 cut(s)	442
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	278
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	3 cut(s)	184, 342, 569
TauI	GCSGC	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	445
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	15, 546
TspGWI	ACGGA	1 cut(s)	319
TspRI	CASTG	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	60, 306
XapI	RAATTY	1 cut(s)	342
XceI	RCATGY	1 cut(s)	257
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	2 cut(s)	128, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.