pycom17g03100

Protein of unknown function (DUF1645)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011712
Physical Location & Seq
Forward (+)
2045639 .. 2046517
879 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 879 bp
ATGCAAAACGACGATTTCGAACAGGGACTCGTCTGTCCCAGCTTCAACTGCTACTCCTCCGACAAACTAGCAGATGCCGCCGCCAAGGTCTGTCGGGAATTGGACCACCTCAATTTGCTCGAAGATTCGGAGTCCGGTCAGTTAGCAGACTGTAAAAATGACAGCGAATCCGCCACCGCCGACAAGGAGGAGGAGGATGAGTTCGAATTCGTGTCCTTTCAGAAATCCGCCGACCAGGTTTTCTTCGACGACCGCCAGATCGGCCCCGTTTTTCCCGTGTTCAACCGCGACCTCCTGCTGGATAGAAGTCAACCTGATCTCCTCGCCGGCGGTCGGAATGATAAAAAGGTGGAGGACGACGACGATGGTGTGCCGTCATCGTCATCGTCCGAAGTGGACGAGCTGGAGGCGGTCCCACCGGGGACATACTGCGTGTGGATGCCGAAATCCGCGTCGGCAGAAGCGCGTGGGAAGTGCAAGAAGAGTAAGTCGACCGGAACATCGTCGTCCGGAACGTCGTCGTCTCGGCGTTGGAGCCTCCGGGATTTGCTTCGGCGGAGCAACAGCGAAGGCGGCAAGAACATGGTGTTCTTGACCCCTTTGTCGTCCACCTCCAAGAAAGTAGAAGACAACAAGGAAACCAAAAAGAGCTCCGGGTCGGGAACCGGGTCCACATCTGGGTCTGATAGGCCCAGGAAAAAGCCCAGTACAGGCTCAAACGCGTTGTCGATGGCTCACGAGGCGTTCTATGTGAGGAACAAGACGGTGGCGAAGGACGGGTACAATAAGCGGCGTTCGTATCTTCCATACAGGCAGGACCTGGTGGGGTTCTTTGCTAGTGTGAACGCCGTGAGTGGAAGCTTCACACCTGCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1645

Protein Analysis

293

Amino Acids

31.88

Weight (kDa)

5.24

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 82 - 269 5.3e-26 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011712)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G27880
fragaria_vesca FvH4_6g50800
malus_domestica MD09G1032200.v1.1
prunus_persica Prupe.3G285800_v2.0.a1
pyrus_communis pycom111g02550 pycom17g03100
rosa_chinensis RchiOBHm_Chr2g0172191
rosa_laevigata RLG00000022091 RLG00000035990
rosa_multiflora Rmu_ssc0000252.1_g000049
rosa_roxburghii Rroxscaffold_2G00121460
rosa_rugosa Rorug02G0556900
rosa_samantha Rh2AG632500 Rh2BG646100 Rh2CG612700 Rh2DG653500 Rh2DG660700 Rh5DG040300
rosa_wichuraiana Rw2G052360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 33, 601
AccI GTMKAC 1 cut(s) 491
AccII CGCG 4 cut(s) 288, 452, 466, 722
AccIII TCCGGA 1 cut(s) 509
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 2 cut(s) 709, 782
AfiI CCNNNNNNNGG 4 cut(s) 298, 333, 678, 710
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 2 cut(s) 46, 283
AjnI CCWGG 3 cut(s) 234, 692, 819
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 4 cut(s) 42, 403, 651, 861
AluI AGCT 4 cut(s) 42, 403, 651, 861
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 1 cut(s) 528
AlwNI CAGNNNCTG 1 cut(s) 820
Aor13HI TCCGGA 1 cut(s) 509
AoxI GGCC 2 cut(s) 262, 689
ApoI RAATTY 1 cut(s) 206
ArsI GACNNNNNNTTYG 4 cut(s) 437, 469, 710, 742
AspLEI GCGC 1 cut(s) 466
AspS9I GGNCC 6 cut(s) 103, 263, 412, 669, 690, 817
AsuC2I CCSGG 4 cut(s) 420, 542, 655, 667
AsuII TTCGAA 2 cut(s) 18, 204
AvaII GGWCC 4 cut(s) 103, 412, 669, 817
BanII GRGCYC 1 cut(s) 653
BarI GAAGNNNNNNTAC 2 cut(s) 764, 796
BauI CACGAG 1 cut(s) 737
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 653
BccI CCATC 2 cut(s) 359, 724
BceAI ACGGC 2 cut(s) 358, 833
BciT130I CCWGG 3 cut(s) 236, 694, 821
BcnI CCSGG 4 cut(s) 420, 542, 655, 667
BcoDI GTCTC 1 cut(s) 528
BfaI CTAG 2 cut(s) 68, 837
BglI GCCNNNNNGGC 1 cut(s) 261
BisI GCNGC 4 cut(s) 78, 81, 574, 791
BlsI GCNGC 4 cut(s) 79, 82, 575, 792
Bme1390I CCNGG 7 cut(s) 236, 420, 542, 655, 667, 694, 821
Bme18I GGWCC 4 cut(s) 103, 412, 669, 817
BmgT120I GGNCC 6 cut(s) 103, 263, 412, 669, 690, 817
BmiI GGNNCC 5 cut(s) 265, 414, 536, 664, 670
BmrFI CCNGG 7 cut(s) 236, 420, 542, 655, 667, 694, 821
BmrI ACTGGG 1 cut(s) 699
BmsI GCATC 2 cut(s) 64, 429
BmuI ACTGGG 1 cut(s) 699
BpiI GAAGAC 1 cut(s) 633
BpmI CTGGAG 1 cut(s) 425
Bpu14I TTCGAA 2 cut(s) 18, 204
BpuMI CCSGG 4 cut(s) 420, 542, 655, 667
BsaJI CCNNGG 3 cut(s) 84, 419, 692
BsaWI WCCGGW 3 cut(s) 134, 494, 509
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 185, 215, 303, 333
Bsc4I CCNNNNNNNGG 4 cut(s) 298, 333, 678, 710
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 705
BseAI TCCGGA 1 cut(s) 509
BseBI CCWGG 3 cut(s) 236, 694, 821
BseDI CCNNGG 3 cut(s) 84, 419, 692
BseGI GGATG 2 cut(s) 202, 444
BseLI CCNNNNNNNGG 4 cut(s) 298, 333, 678, 710
BseNI ACTGG 1 cut(s) 705
BseRI GAGGAG 4 cut(s) 46, 203, 206, 311
BseYI CCCAGC 1 cut(s) 38
Bsh1236I CGCG 4 cut(s) 288, 452, 466, 722
Bsh1285I CGRYCG 3 cut(s) 253, 334, 495
BshFI GGCC 2 cut(s) 264, 691
BsiEI CGRYCG 3 cut(s) 253, 334, 495
BsiHKAI GWGCWC 1 cut(s) 653
BsiSI CCGG 8 cut(s) 135, 327, 419, 495, 510, 541, 654, 666
BslFI GGGAC 4 cut(s) 21, 39, 398, 436
BslI CCNNNNNNNGG 4 cut(s) 298, 333, 678, 710
BsmAI GTCTC 1 cut(s) 528
BsmBI CGTCTC 1 cut(s) 528
BsmFI GGGAC 4 cut(s) 21, 39, 398, 436
BsnI GGCC 2 cut(s) 264, 691
Bsp119I TTCGAA 2 cut(s) 18, 204
Bsp1286I GDGCHC 1 cut(s) 653
Bsp13I TCCGGA 1 cut(s) 509
Bsp143I GATC 2 cut(s) 258, 316
BspANI GGCC 2 cut(s) 264, 691
BspEI TCCGGA 1 cut(s) 509
BspFNI CGCG 4 cut(s) 288, 452, 466, 722
BspLI GGNNCC 5 cut(s) 265, 414, 536, 664, 670
BspT104I TTCGAA 2 cut(s) 18, 204
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 1 cut(s) 705
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 3 cut(s) 84, 419, 692
BssMI GATC 2 cut(s) 258, 316
BssSI CACGAG 1 cut(s) 737
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 737
Bst2UI CCWGG 3 cut(s) 236, 694, 821
Bst4CI ACNGT 2 cut(s) 152, 766
Bst6I CTCTTC 1 cut(s) 476
BstBI TTCGAA 2 cut(s) 18, 204
BstC8I GCNNGC 1 cut(s) 328
BstF5I GGATG 2 cut(s) 202, 444
BstFNI CGCG 4 cut(s) 288, 452, 466, 722
BstHHI GCGC 1 cut(s) 466
BstKTI GATC 2 cut(s) 261, 319
BstMAI GTCTC 1 cut(s) 528
BstMBI GATC 2 cut(s) 258, 316
BstMCI CGRYCG 3 cut(s) 253, 334, 495
BstMWI GCNNNNNNNGC 5 cut(s) 48, 77, 261, 573, 740
BstNI CCWGG 3 cut(s) 236, 694, 821
BstSCI CCNGG 7 cut(s) 234, 418, 540, 653, 665, 692, 819
BstUI CGCG 4 cut(s) 288, 452, 466, 722
BstV2I GAAGAC 1 cut(s) 633
BsuRI GGCC 2 cut(s) 264, 691
BtsCI GGATG 2 cut(s) 202, 444
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 820
CfoI GCGC 1 cut(s) 466
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 6 cut(s) 103, 263, 412, 669, 690, 817
CseI GACGC 1 cut(s) 441
CsiI ACCWGGT 2 cut(s) 234, 819
Csp6I GTAC 2 cut(s) 708, 781
CviAII CATG 1 cut(s) 583
CviQI GTAC 2 cut(s) 708, 781
DpnI GATC 2 cut(s) 260, 318
DpnII GATC 2 cut(s) 258, 316
DrdI GACNNNNNNGTC 2 cut(s) 33, 601
DseDI GACNNNNNNGTC 2 cut(s) 33, 601
Eam1104I CTCTTC 1 cut(s) 476
EarI CTCTTC 1 cut(s) 476
EciI GGCGGA 3 cut(s) 160, 217, 571
Ecl136II GAGCTC 1 cut(s) 651
Eco130I CCWWGG 1 cut(s) 84
Eco24I GRGCYC 1 cut(s) 653
Eco47I GGWCC 4 cut(s) 103, 412, 669, 817
Eco53kI GAGCTC 1 cut(s) 651
EcoICRI GAGCTC 1 cut(s) 651
EcoO109I RGGNCCY 1 cut(s) 817
EcoRI GAATTC 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 234, 692, 819
EcoT14I CCWWGG 1 cut(s) 84
EcoT38I GRGCYC 1 cut(s) 653
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 528
FaeI CATG 1 cut(s) 586
FaiI YATR 4 cut(s) 427, 584, 750, 808
FaqI GGGAC 4 cut(s) 21, 39, 398, 436
FatI CATG 1 cut(s) 582
FblI GTMKAC 1 cut(s) 491
Fnu4HI GCNGC 4 cut(s) 78, 81, 574, 791
FokI GGATG 2 cut(s) 209, 451
FriOI GRGCYC 1 cut(s) 653
Fsp4HI GCNGC 4 cut(s) 78, 81, 574, 791
FspBI CTAG 2 cut(s) 68, 837
GlaI GCGC 1 cut(s) 465
GluI GCNGC 4 cut(s) 78, 81, 574, 791
GsaI CCCAGC 1 cut(s) 42
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 2 cut(s) 264, 691
HapII CCGG 8 cut(s) 135, 327, 419, 495, 510, 541, 654, 666
HgaI GACGC 1 cut(s) 441
HhaI GCGC 1 cut(s) 466
Hin1II CATG 1 cut(s) 586
Hin6I GCGC 1 cut(s) 464
HinP1I GCGC 1 cut(s) 464
HincII GTYRAC 2 cut(s) 311, 492
HindII GTYRAC 2 cut(s) 311, 492
HindIII AAGCTT 1 cut(s) 859
HinfI GANTC 4 cut(s) 27, 125, 131, 167
HpaII CCGG 8 cut(s) 135, 327, 419, 495, 510, 541, 654, 666
Hpy166II GTNNAC 6 cut(s) 311, 397, 492, 609, 672, 844
Hpy188I TCNGA 7 cut(s) 61, 130, 222, 336, 391, 685, 878
Hpy188III TCNNGA 5 cut(s) 95, 510, 592, 660, 737
Hpy8I GTNNAC 6 cut(s) 311, 397, 492, 609, 672, 844
Hpy99I CGWCG 8 cut(s) 14, 251, 362, 365, 457, 508, 520, 523
HpyAV CCTTC 2 cut(s) 563, 766
HpyCH4III ACNGT 2 cut(s) 152, 766
HpyCH4IV ACGT 1 cut(s) 515
HpyCH4V TGCA 2 cut(s) 4, 477
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 77, 261, 573, 740
HpySE526I ACGT 1 cut(s) 515
Hsp92II CATG 1 cut(s) 586
HspAI GCGC 1 cut(s) 464
Kpn2I TCCGGA 1 cut(s) 509
KroI GCCGGC 1 cut(s) 326
KroNI GCCGGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 258, 316
LmnI GCTCC 3 cut(s) 534, 558, 656
LweI GCATC 2 cut(s) 64, 429
MabI ACCWGGT 2 cut(s) 234, 819
MaeI CTAG 2 cut(s) 68, 837
MaeII ACGT 1 cut(s) 515
MalI GATC 2 cut(s) 260, 318
MboI GATC 2 cut(s) 258, 316
MboII GAAGA 5 cut(s) 134, 235, 493, 638, 794
MhlI GDGCHC 1 cut(s) 653
MluCI AATT 3 cut(s) 98, 112, 206
MluI ACGCGT 1 cut(s) 720
MlyI GAGTC 2 cut(s) 21, 140
MmeI TCCRAC 3 cut(s) 84, 314, 512
MreI CGCCGGCG 1 cut(s) 326
MroI TCCGGA 1 cut(s) 509
MroNI GCCGGC 1 cut(s) 326
MspI CCGG 8 cut(s) 135, 327, 419, 495, 510, 541, 654, 666
MspR9I CCNGG 7 cut(s) 236, 420, 542, 655, 667, 694, 821
MvaI CCWGG 3 cut(s) 236, 694, 821
MvnI CGCG 4 cut(s) 288, 452, 466, 722
MwoI GCNNNNNNNGC 5 cut(s) 48, 77, 261, 573, 740
NaeI GCCGGC 1 cut(s) 328
NciI CCSGG 4 cut(s) 420, 542, 655, 667
NdeII GATC 2 cut(s) 258, 316
NgoMIV GCCGGC 1 cut(s) 326
NlaIII CATG 1 cut(s) 586
NlaIV GGNNCC 5 cut(s) 265, 414, 536, 664, 670
NmeAIII GCCGAG 1 cut(s) 505
NspV TTCGAA 2 cut(s) 18, 204
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 512
PdiI GCCGGC 1 cut(s) 328
PfeI GAWTC 2 cut(s) 125, 167
PfoI TCCNGGA 1 cut(s) 540
PkrI GCNGC 4 cut(s) 79, 82, 575, 792
PleI GAGTC 2 cut(s) 21, 139
PpsI GAGTC 2 cut(s) 21, 139
PpuMI RGGWCCY 1 cut(s) 817
Psp124BI GAGCTC 1 cut(s) 653
Psp5II RGGWCCY 1 cut(s) 817
Psp6I CCWGG 3 cut(s) 234, 692, 819
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 3 cut(s) 234, 692, 819
PspN4I GGNNCC 5 cut(s) 265, 414, 536, 664, 670
PspPI GGNCC 6 cut(s) 103, 263, 412, 669, 690, 817
PspPPI RGGWCCY 1 cut(s) 817
PstNI CAGNNNCTG 1 cut(s) 820
RsaI GTAC 2 cut(s) 709, 782
RsaNI GTAC 2 cut(s) 708, 781
SacI GAGCTC 1 cut(s) 653
SalI GTCGAC 1 cut(s) 490
SatI GCNGC 4 cut(s) 78, 81, 574, 791
Sau3AI GATC 2 cut(s) 258, 316
Sau96I GGNCC 6 cut(s) 103, 263, 412, 669, 690, 817
SchI GAGTC 2 cut(s) 21, 140
ScrFI CCNGG 7 cut(s) 236, 420, 542, 655, 667, 694, 821
SduI GDGCHC 1 cut(s) 653
SexAI ACCWGGT 2 cut(s) 234, 819
SfaNI GCATC 2 cut(s) 64, 429
SfuI TTCGAA 2 cut(s) 18, 204
SgrAI CRCCGGYG 1 cut(s) 326
SinI GGWCC 4 cut(s) 103, 412, 669, 817
Sse9I AATT 3 cut(s) 98, 112, 206
SspMI CTAG 2 cut(s) 68, 837
SstI GAGCTC 1 cut(s) 653
StyD4I CCNGG 7 cut(s) 234, 418, 540, 653, 665, 692, 819
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 152, 766
TaiI ACGT 1 cut(s) 518
TaqI TCGA 6 cut(s) 18, 120, 204, 246, 491, 728
TasI AATT 3 cut(s) 98, 112, 206
TatI WGTACW 1 cut(s) 707
TauI GCSGC 4 cut(s) 80, 83, 576, 793
TfiI GAWTC 2 cut(s) 125, 167
VpaK11BI GGWCC 4 cut(s) 103, 412, 669, 817
XapI RAATTY 1 cut(s) 206
XmiI GTMKAC 1 cut(s) 491
XspI CTAG 2 cut(s) 68, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.