Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009012

Physical Location & Seq

Genomic Coordinates Reverse (-)

2088466 .. 2090740

Gene Structure 2275 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAGAAAGCGACAAGTTGGATTTGTTTTCTTTTGGTCACTCCATATTAATTTCTTGAAGAAACGAAAAAAAACCCGTCAAATTGTAGATGTAGGGGAATACCCATCTCAGACTGAGACTGAGACTCAGAGTCCACACCAAAATATGGAAACAGTTTCAGACGACCAACCAGATACACCACCACAACACAAAGAAGAAGAAAAACACAACGAAAAACAAGTGCAAGAGGAAGAGGAGCAGGAAGAAGAAGAAAGGCAGAGCTTCCCAGAAACACCCTCCTCGACGCATCAAACCTTTCTCGCTTATGAAATCACAGTCGCACCTGCAGACATCAAGCCGGCGTCGCCGCAGCTTGCGCCGCCCCAGTCCTTCAGGGCTGAGCCCAAGGTTGTGGGTCCCAATTCCAGAGATGGGTTTGATGGGACCACGGCGGTTCGGGAAGAGAGTGGCGGTAGAATCGGTGGTGGTTCGGTTGTAAATATTCAAACTTTGAGACCCAAGTTGTCGATGCTGAAGAGGCCGAGGAGGGAGAGCGTGGTGAGGAGGGCTTTGTTTGGGTTAAGGATTTCTGGGTTTGCGTTGTGTTTGATCTCTTTCTCTGTCATGGCGGCTGACAAGAACCAGGGTTGGGCTTTAGATTCCTTCTATCGCTACAAGGAGTTCAGGTTCTGCTTGGCAGTGAATGTGATAGGATTTGTGTATTCGGGGCTGCAAACTTATGATTTAACCTATTTCTTCACCAGTGGAAAGCATGTAATCCAGCACCATCTCCGCTATTACCTTGATTTCTTGTTGGATCAGATTTTAACTTACCTTTTGATGTCGGCGTCTTCGTCGGCTGCGATTCGGGTTGACGACTGGGAGTCGAACTGGGGCAAAGATAAGTTCCCGGATATGGCTCGTGCGTCCGTGGCATTGTCCTTCCTTGCCTTCGTCGCCTTTGCCTCAAGCTCCCTCATCTCTGGTTACACCCTTTGTACTCTAAAATCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

332

Amino Acids

37.63

Weight (kDa)

6.73

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	179 - 313	4.2e-31	Casparian strip membrane protein domain
MARVEL	PF01284	184 - 317	1.3e-08	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009012)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40300
fragaria_vesca	FvH4_6g50680 FvH4_6g50680 FvH4_6g50680 FvH4_6g50680
malus_domestica	MD09G1034100.v1.1
prunus_persica	Prupe.3G284200_v2.0.a1
pyrus_communis	pycom111g02710 pycom17g03190
rosa_chinensis	RchiOBHm_Chr2g0171451 RchiOBHm_Chr2g0171471
rosa_laevigata	RLG00000022015
rosa_multiflora	Rmu_sc0006783.1_g000001
rosa_roxburghii	Rroxscaffold_2G00080640
rosa_rugosa	Rorug02G0554500
rosa_samantha	Rh2AG628700 Rh2BG639100 Rh2BG639400 Rh2CG607800 Rh2DG650200 Rh2DG656200
rosa_wichuraiana	Rw2G052080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	331
Acc36I	ACCTGC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	145
AciI	CCGC	6 cut(s)	347, 359, 431, 450, 608, 772
AclWI	GGATC	1 cut(s)	804
AcuI	CTGAAG	2 cut(s)	355, 533
AcyI	GRCGYC	2 cut(s)	341, 827
AfaI	GTAC	1 cut(s)	979
AfiI	CCNNNNNNNGG	4 cut(s)	145, 411, 628, 895
AgsI	TTSAA	2 cut(s)	58, 485
AhdI	GACNNNNNGTC	2 cut(s)	129, 862
AjnI	CCWGG	1 cut(s)	621
AloI	GAACNNNNNNTCC	2 cut(s)	650, 682
AluBI	AGCT	3 cut(s)	261, 352, 951
AluI	AGCT	3 cut(s)	261, 352, 951
Alw26I	GTCTC	3 cut(s)	110, 116, 487
AlwI	GGATC	1 cut(s)	804
AlwNI	CAGNNNCTG	1 cut(s)	669
AoxI	GGCC	1 cut(s)	518
ApeKI	GCWGC	3 cut(s)	349, 709, 839
AseI	ATTAAT	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	358
AspS9I	GGNCC	2 cut(s)	395, 423
AsuC2I	CCSGG	1 cut(s)	890
AsuHPI	GGTGA	2 cut(s)	550, 730
AvaII	GGWCC	2 cut(s)	395, 423
BanII	GRGCYC	1 cut(s)	384
BauI	CACGAG	1 cut(s)	900
BbsI	GAAGAC	1 cut(s)	822
BbvI	GCAGC	3 cut(s)	361, 696, 826
BccI	CCATC	4 cut(s)	112, 404, 413, 774
BceAI	ACGGC	1 cut(s)	444
BciT130I	CCWGG	1 cut(s)	623
BcnI	CCSGG	1 cut(s)	890
BcoDI	GTCTC	3 cut(s)	110, 116, 487
BfaI	CTAG	1 cut(s)	994
BfmI	CTRYAG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	331
BisI	GCNGC	6 cut(s)	347, 350, 359, 609, 710, 840
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	6 cut(s)	348, 351, 360, 610, 711, 841
Bme1390I	CCNGG	2 cut(s)	623, 890
Bme18I	GGWCC	2 cut(s)	395, 423
BmeRI	GACNNNNNGTC	2 cut(s)	129, 862
BmgT120I	GGNCC	2 cut(s)	395, 423
BmiI	GGNNCC	3 cut(s)	396, 397, 424
BmrFI	CCNGG	2 cut(s)	623, 890
BmrI	ACTGGG	3 cut(s)	358, 868, 880
BmsI	GCATC	2 cut(s)	295, 498
BmuI	ACTGGG	3 cut(s)	358, 868, 880
BpiI	GAAGAC	1 cut(s)	822
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	931
BpuMI	CCSGG	1 cut(s)	890
BsaHI	GRCGYC	2 cut(s)	341, 827
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	5 cut(s)	384, 426, 521, 622, 909
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bsc4I	CCNNNNNNNGG	4 cut(s)	145, 411, 628, 895
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	4 cut(s)	364, 741, 863, 875
BseBI	CCWGG	1 cut(s)	623
BseDI	CCNNGG	5 cut(s)	384, 426, 521, 622, 909
BseLI	CCNNNNNNNGG	4 cut(s)	145, 411, 628, 895
BseMII	CTCAG	5 cut(s)	105, 111, 122, 140, 369
BseNI	ACTGG	4 cut(s)	364, 741, 863, 875
BseRI	GAGGAG	4 cut(s)	248, 268, 538, 556
BseXI	GCAGC	3 cut(s)	361, 696, 826
BshFI	GGCC	1 cut(s)	520
BsiSI	CCGG	2 cut(s)	338, 890
BslFI	GGGAC	2 cut(s)	381, 436
BslI	CCNNNNNNNGG	4 cut(s)	145, 411, 628, 895
BsmAI	GTCTC	3 cut(s)	110, 116, 487
BsmFI	GGGAC	2 cut(s)	381, 436
BsnI	GGCC	1 cut(s)	520
Bso31I	GGTCTC	1 cut(s)	487
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	588, 796
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	6 cut(s)	347, 359, 431, 450, 608, 772
BspANI	GGCC	1 cut(s)	520
BspCNI	CTCAG	5 cut(s)	106, 112, 121, 139, 370
BspLI	GGNNCC	3 cut(s)	396, 397, 424
BspMAI	CTGCAG	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	804
BspTNI	GGTCTC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	4 cut(s)	364, 741, 863, 875
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	5 cut(s)	384, 426, 521, 622, 909
BssMI	GATC	2 cut(s)	588, 796
BssNI	GRCGYC	2 cut(s)	341, 827
BssSI	CACGAG	1 cut(s)	900
BssT1I	CCWWGG	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	900
Bst2UI	CCWGG	1 cut(s)	623
Bst4CI	ACNGT	2 cut(s)	154, 316
Bst6I	CTCTTC	3 cut(s)	225, 435, 509
BstACI	GRCGYC	2 cut(s)	341, 827
BstC8I	GCNNGC	2 cut(s)	339, 354
BstDEI	CTNAG	5 cut(s)	108, 114, 120, 126, 378
BstDSI	CCRYGG	2 cut(s)	426, 909
BstHHI	GCGC	1 cut(s)	358
BstKTI	GATC	2 cut(s)	591, 799
BstMAI	GTCTC	3 cut(s)	110, 116, 487
BstMBI	GATC	2 cut(s)	588, 796
BstMWI	GCNNNNNNNGC	6 cut(s)	343, 355, 358, 517, 911, 935
BstNI	CCWGG	1 cut(s)	623
BstNSI	RCATGY	1 cut(s)	755
BstSCI	CCNGG	2 cut(s)	621, 888
BstSFI	CTRYAG	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	361, 696, 826
BstV2I	GAAGAC	1 cut(s)	822
BstXI	CCANNNNNNTGG	1 cut(s)	391
BsuRI	GGCC	1 cut(s)	520
BtgI	CCRYGG	2 cut(s)	426, 909
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	684, 748
BveI	ACCTGC	1 cut(s)	331
Cac8I	GCNNGC	2 cut(s)	339, 354
CaiI	CAGNNNCTG	1 cut(s)	669
CfoI	GCGC	1 cut(s)	358
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	395, 423
CseI	GACGC	4 cut(s)	292, 330, 816, 894
Csp6I	GTAC	1 cut(s)	978
CviAII	CATG	2 cut(s)	604, 752
CviQI	GTAC	1 cut(s)	978
DdeI	CTNAG	5 cut(s)	108, 114, 120, 126, 378
DpnI	GATC	2 cut(s)	590, 798
DpnII	GATC	2 cut(s)	588, 796
DriI	GACNNNNNGTC	2 cut(s)	129, 862
Eam1104I	CTCTTC	3 cut(s)	225, 435, 509
Eam1105I	GACNNNNNGTC	2 cut(s)	129, 862
EarI	CTCTTC	3 cut(s)	225, 435, 509
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	395, 423
Eco57I	CTGAAG	2 cut(s)	355, 533
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	621
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	2 cut(s)	607, 755
FaiI	YATR	7 cut(s)	45, 146, 306, 605, 720, 753, 896
FaqI	GGGAC	2 cut(s)	381, 436
FatI	CATG	2 cut(s)	603, 751
Fnu4HI	GCNGC	6 cut(s)	347, 350, 359, 609, 710, 840
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	6 cut(s)	347, 350, 359, 609, 710, 840
FspBI	CTAG	1 cut(s)	994
GlaI	GCGC	1 cut(s)	357
GluI	GCNGC	6 cut(s)	347, 350, 359, 609, 710, 840
HaeIII	GGCC	1 cut(s)	520
HapII	CCGG	2 cut(s)	338, 890
HgaI	GACGC	4 cut(s)	292, 330, 816, 894
HhaI	GCGC	1 cut(s)	358
Hin1I	GRCGYC	2 cut(s)	341, 827
Hin1II	CATG	2 cut(s)	607, 755
Hin6I	GCGC	1 cut(s)	356
HinP1I	GCGC	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	853
HindII	GTYRAC	1 cut(s)	853
HinfI	GANTC	6 cut(s)	124, 130, 456, 638, 844, 863
HpaII	CCGG	2 cut(s)	338, 890
HphI	GGTGA	2 cut(s)	550, 730
Hpy166II	GTNNAC	2 cut(s)	134, 853
Hpy188I	TCNGA	4 cut(s)	111, 129, 160, 801
Hpy188III	TCNNGA	3 cut(s)	55, 405, 437
Hpy8I	GTNNAC	2 cut(s)	134, 853
Hpy99I	CGWCG	4 cut(s)	286, 346, 838, 938
HpyAV	CCTTC	4 cut(s)	379, 652, 931, 940
HpyCH4III	ACNGT	2 cut(s)	154, 316
HpyCH4V	TGCA	3 cut(s)	223, 326, 712
HpyF10VI	GCNNNNNNNGC	6 cut(s)	343, 355, 358, 517, 911, 935
HpyF3I	CTNAG	5 cut(s)	108, 114, 120, 126, 378
Hsp92I	GRCGYC	2 cut(s)	341, 827
Hsp92II	CATG	2 cut(s)	607, 755
HspAI	GCGC	1 cut(s)	356
KflI	GGGWCCC	1 cut(s)	395
KroI	GCCGGC	1 cut(s)	337
KroNI	GCCGGC	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	588, 796
LmnI	GCTCC	2 cut(s)	235, 956
Lsp1109I	GCAGC	3 cut(s)	361, 696, 826
LweI	GCATC	2 cut(s)	295, 498
MaeI	CTAG	1 cut(s)	994
MaeIII	GTNAC	2 cut(s)	36, 965
MalI	GATC	2 cut(s)	590, 798
MboI	GATC	2 cut(s)	588, 796
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	49, 81, 400
MlyI	GAGTC	3 cut(s)	118, 139, 872
MmeI	TCCRAC	1 cut(s)	774
MroNI	GCCGGC	1 cut(s)	337
MseI	TTAA	4 cut(s)	48, 560, 725, 806
MspI	CCGG	2 cut(s)	338, 890
MspR9I	CCNGG	2 cut(s)	623, 890
MvaI	CCWGG	1 cut(s)	623
MwoI	GCNNNNNNNGC	6 cut(s)	343, 355, 358, 517, 911, 935
NaeI	GCCGGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	890
NdeII	GATC	2 cut(s)	588, 796
NgoMIV	GCCGGC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	607, 755
NlaIV	GGNNCC	3 cut(s)	396, 397, 424
NmeAIII	GCCGAG	1 cut(s)	546
NmuCI	GTSAC	1 cut(s)	36
NspI	RCATGY	1 cut(s)	755
PaqCI	CACCTGC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	2 cut(s)	830, 839
PdiI	GCCGGC	1 cut(s)	339
PfeI	GAWTC	3 cut(s)	456, 638, 844
PflMI	CCANNNNNTGG	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	888
PkrI	GCNGC	6 cut(s)	348, 351, 360, 610, 711, 841
PleI	GAGTC	3 cut(s)	118, 138, 871
PpsI	GAGTC	3 cut(s)	118, 138, 871
PpuMI	RGGWCCY	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	48
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	621
PspGI	CCWGG	1 cut(s)	621
PspN4I	GGNNCC	3 cut(s)	396, 397, 424
PspPI	GGNCC	2 cut(s)	395, 423
PspPPI	RGGWCCY	1 cut(s)	395
PstI	CTGCAG	1 cut(s)	328
PstNI	CAGNNNCTG	1 cut(s)	669
RsaI	GTAC	1 cut(s)	979
RsaNI	GTAC	1 cut(s)	978
SaqAI	TTAA	4 cut(s)	48, 560, 725, 806
SatI	GCNGC	6 cut(s)	347, 350, 359, 609, 710, 840
Sau3AI	GATC	2 cut(s)	588, 796
Sau96I	GGNCC	2 cut(s)	395, 423
SchI	GAGTC	3 cut(s)	118, 139, 872
ScrFI	CCNGG	2 cut(s)	623, 890
SduI	GDGCHC	1 cut(s)	384
SfaNI	GCATC	2 cut(s)	295, 498
SfcI	CTRYAG	1 cut(s)	324
SinI	GGWCC	2 cut(s)	395, 423
SmlI	CTYRAG	1 cut(s)	946
SmoI	CTYRAG	1 cut(s)	946
Sse9I	AATT	3 cut(s)	49, 81, 400
SsiI	CCGC	6 cut(s)	347, 359, 431, 450, 608, 772
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	1 cut(s)	994
StyD4I	CCNGG	2 cut(s)	621, 888
StyI	CCWWGG	1 cut(s)	384
TaaI	ACNGT	2 cut(s)	154, 316
TaqI	TCGA	3 cut(s)	281, 506, 866
TasI	AATT	3 cut(s)	49, 81, 400
TatI	WGTACW	1 cut(s)	977
TauI	GCSGC	3 cut(s)	349, 361, 611
TfiI	GAWTC	3 cut(s)	456, 638, 844
Tru1I	TTAA	4 cut(s)	48, 560, 725, 806
Tru9I	TTAA	4 cut(s)	48, 560, 725, 806
TscAI	CASTG	2 cut(s)	684, 748
TseFI	GTSAC	1 cut(s)	36
TseI	GCWGC	3 cut(s)	349, 709, 839
Tsp45I	GTSAC	1 cut(s)	36
TspDTI	ATGAA	1 cut(s)	321
TspGWI	ACGGA	1 cut(s)	898
TspRI	CASTG	2 cut(s)	684, 748
Van91I	CCANNNNNTGG	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	395, 423
VspI	ATTAAT	1 cut(s)	48
XceI	RCATGY	1 cut(s)	755
XspI	CTAG	1 cut(s)	994

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.