pycom17g05950

Protein CHLORORESPIRATORY REDUCTION 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014482
Physical Location & Seq
Reverse (-)
4191640 .. 4192437
798 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGGTGGATTTCTGGCTTTTAACTCACTATAACTGCAGGCAAAGAAGGTACAAAGAGCCGGATTCGAGCTCCCGTAATTCAATTAATGGCGACACGAAAAATGATGAGTCTGAGTACATGAAGTACTTCGTCAACAAACATAGCGTAGTCATGTTGGCTGGAGTGGATATCTCCCTTCTCATAGTTTGTGCAGTGAGGCGGAGAAGGATATACCATAACAGTGAAACTTATGTGTTACTGGAGCCAGGAGAGGATGAGAAGTTTGTTTCAGAGGATGAGCTGAGAGCCAAGTTAAAAGGTTGGCTGGAGAACTGGCCTGCCAAAAACCTTCCTCTTGACCTTGCGAGATTCGAAAGTATCAACGACGCCGTTTCTTATATAGTGAGGTCTGTTTGTGAACTTGAAATTCATGGGGATGTAGGTTCAATCCAGTGGTACGAAGTTCGAATGGAGTGA

Protein Analysis

152

Amino Acids

17.78

Weight (kDa)

5.45

Isoelectric Point (pI)

53.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRR7 PF12095 70 - 151 2.3e-27 Protein CHLORORESPIRATORY REDUCTION 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014482)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39210
fragaria_vesca FvH4_6g46840
malus_domestica MD09G1066900.v1.1
prunus_persica Prupe.3G254800_v2.0.a1
pyrus_communis pycom111g05620 pycom17g05950
rosa_chinensis RchiOBHm_Chr2g0165831
rosa_laevigata RLG00000021560
rosa_multiflora Rmu_sc0003227.1_g000001 Rmu_sc0008709.1_g000001
rosa_roxburghii Rroxscaffold_2G00085460
rosa_rugosa Rorug02G0518200
rosa_samantha Rh2AG584000 Rh2BG595900 Rh2CG566900 Rh2DG605700
rosa_wichuraiana Rw2G048690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 199
AcsI RAATTY 1 cut(s) 405
AcyI GRCGYC 1 cut(s) 366
AfaI GTAC 4 cut(s) 50, 116, 125, 437
AgsI TTSAA 3 cut(s) 81, 404, 426
AjnI CCWGG 1 cut(s) 244
AluBI AGCT 2 cut(s) 69, 280
AluI AGCT 2 cut(s) 69, 280
Alw21I GWGCWC 1 cut(s) 71
AoxI GGCC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 405
AseI ATTAAT 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 125
AsuII TTCGAA 2 cut(s) 351, 445
BanII GRGCYC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 1 cut(s) 246
BfmI CTRYAG 1 cut(s) 34
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 246
BpmI CTGGAG 3 cut(s) 180, 260, 326
Bpu14I TTCGAA 2 cut(s) 351, 445
BsaHI GRCGYC 1 cut(s) 366
Bse1I ACTGG 3 cut(s) 243, 317, 430
BseBI CCWGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 259, 280, 421
BseMII CTCAG 2 cut(s) 102, 272
BseNI ACTGG 3 cut(s) 243, 317, 430
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 316
Bsp119I TTCGAA 2 cut(s) 351, 445
Bsp1286I GDGCHC 1 cut(s) 71
BspACI CCGC 1 cut(s) 199
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 2 cut(s) 103, 273
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 38
BspT104I TTCGAA 2 cut(s) 351, 445
BsrI ACTGG 3 cut(s) 243, 317, 430
BssNI GRCGYC 1 cut(s) 366
Bst2UI CCWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 366
BstBI TTCGAA 2 cut(s) 351, 445
BstC8I GCNNGC 2 cut(s) 38, 318
BstDEI CTNAG 2 cut(s) 111, 281
BstF5I GGATG 3 cut(s) 259, 280, 421
BstNI CCWGG 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 244
BstSFI CTRYAG 1 cut(s) 34
BsuRI GGCC 1 cut(s) 316
BtsCI GGATG 3 cut(s) 259, 280, 421
BtsI GCAGTG 1 cut(s) 198
BtsIMutI CAGTG 3 cut(s) 198, 226, 437
Cac8I GCNNGC 2 cut(s) 38, 318
CseI GACGC 1 cut(s) 374
Csp6I GTAC 4 cut(s) 49, 115, 124, 436
CviAII CATG 3 cut(s) 118, 151, 410
CviJI RGCY 9 cut(s) 16, 58, 69, 158, 244, 280, 287, 304, 316
CviKI_1 RGCY 9 cut(s) 16, 58, 69, 158, 244, 280, 287, 304, 316
CviQI GTAC 4 cut(s) 49, 115, 124, 436
DdeI CTNAG 2 cut(s) 111, 281
EciI GGCGGA 1 cut(s) 214
Ecl136II GAGCTC 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 71
Eco32I GATATC 1 cut(s) 169
Eco53kI GAGCTC 1 cut(s) 69
EcoICRI GAGCTC 1 cut(s) 69
EcoRII CCWGG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 169
EcoT38I GRGCYC 1 cut(s) 71
FaeI CATG 3 cut(s) 121, 154, 413
FatI CATG 3 cut(s) 117, 150, 409
FokI GGATG 3 cut(s) 266, 287, 428
FriOI GRGCYC 1 cut(s) 71
GsuI CTGGAG 3 cut(s) 180, 260, 326
HaeIII GGCC 1 cut(s) 316
HapII CCGG 1 cut(s) 59
HgaI GACGC 1 cut(s) 374
Hin1I GRCGYC 1 cut(s) 366
Hin1II CATG 3 cut(s) 121, 154, 413
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 3 cut(s) 62, 107, 348
HpaII CCGG 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 133, 398
Hpy188I TCNGA 2 cut(s) 112, 271
Hpy188III TCNNGA 1 cut(s) 335
Hpy8I GTNNAC 2 cut(s) 133, 398
Hpy99I CGWCG 1 cut(s) 368
HpyAV CCTTC 4 cut(s) 39, 185, 198, 338
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4V TGCA 2 cut(s) 36, 191
HpyF3I CTNAG 2 cut(s) 111, 281
Hsp92I GRCGYC 1 cut(s) 366
Hsp92II CATG 3 cut(s) 121, 154, 413
LmnI GCTCC 2 cut(s) 74, 241
MaeIII GTNAC 1 cut(s) 234
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 3 cut(s) 76, 81, 405
MlyI GAGTC 1 cut(s) 116
MnlI CCTC 5 cut(s) 189, 244, 265, 342, 378
MroXI GAANNNNTTC 1 cut(s) 125
MseI TTAA 3 cut(s) 20, 84, 293
MslI CAYNNNNRTG 2 cut(s) 219, 414
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 246
MvaI CCWGG 1 cut(s) 246
NlaIII CATG 3 cut(s) 121, 154, 413
NlaIV GGNNCC 1 cut(s) 243
NspV TTCGAA 2 cut(s) 351, 445
PdmI GAANNNNTTC 1 cut(s) 125
PfeI GAWTC 2 cut(s) 62, 348
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 244
PspGI CCWGG 1 cut(s) 244
PspN4I GGNNCC 1 cut(s) 243
PstI CTGCAG 1 cut(s) 38
RsaI GTAC 4 cut(s) 50, 116, 125, 437
RsaNI GTAC 4 cut(s) 49, 115, 124, 436
RseI CAYNNNNRTG 2 cut(s) 219, 414
SacI GAGCTC 1 cut(s) 71
SaqAI TTAA 3 cut(s) 20, 84, 293
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 71
SetI ASST 8 cut(s) 50, 71, 282, 301, 330, 342, 389, 424
SfcI CTRYAG 1 cut(s) 34
SfuI TTCGAA 2 cut(s) 351, 445
SmiMI CAYNNNNRTG 2 cut(s) 219, 414
Sse9I AATT 3 cut(s) 76, 81, 405
SsiI CCGC 1 cut(s) 199
SstI GAGCTC 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 1 cut(s) 221
TaqI TCGA 3 cut(s) 65, 351, 445
TasI AATT 3 cut(s) 76, 81, 405
TatI WGTACW 2 cut(s) 114, 123
TfiI GAWTC 2 cut(s) 62, 348
Tru1I TTAA 3 cut(s) 20, 84, 293
Tru9I TTAA 3 cut(s) 20, 84, 293
TscAI CASTG 3 cut(s) 198, 226, 437
TspDTI ATGAA 2 cut(s) 134, 398
TspRI CASTG 3 cut(s) 198, 226, 437
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 1 cut(s) 405
XmnI GAANNNNTTC 1 cut(s) 125
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.