Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Reverse (-)

6058237 .. 6060587

Gene Structure 2351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCGACCGCCTTGGGCTGCCGCCTCAGCGTTCTTGCCTCCCGGTACAAGGATGTGAATCTAAATAGACAGAACAAGCGCAACGGGGTTGCATGTAGATCTAACTTGAATGCAATGCCTATACTGTCAAGCAGCAGGAGTCTACAACAACGTAATCACAATCTGCATTCCTGGGCTCCTAAAGGATTGCCAAGCTTGCAGCTTTCTTCTACGTCATCCACACTGTTAAGAGGGGACCAAGGCGATCGGTCACACAACATATCTGTGTTACCAAGACAACGGAAATCTTCAACATTGGTACAAGCACAGAAGAGTAACTCCATCAGTATACCTTTTCCAAAAATGAAAGAGAAACCAGAATGGTGGTGGAGAACTTTAGCATGTCTCCCCTACTTAATTGCTTTGCAGATGTCTGATACCGGATTTTATATTCAACCCTTCGCAGAACACTACGAATTGTTTGGAGACTTGGTTTATTATGTCCCAGGAGCAATAAAGAGGTTACCGTATTGGTTCACAATGATATATTTCTTCTTCGCATACTTTGGAGTGGTAAAGAGAAAAGAGTGGCCTCACTTCATCAGGTACCACGTAATCATGGCAATGCTATTAGAAACAATGCTGCAAGTGGTGTGGTACTCGAGCAATTTTTTCCCGCTTATACACTTCAATGGCACATTCGGCATAGAATACTGGGCGGCCGTGGCATTCGTGTACGTTTCGGCCTTGCTCGAGTGTATACGGTGTGCTTTTGCCGGCAAGTATGTTAAACTCCCATTCTTTAGTACCCCTGCTTTAGTCCATACTCTTTTCCAAGTAGAAGGATATCATAAACCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

281

Amino Acids

32.41

Weight (kDa)

9.76

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	91 - 264	9.3e-69	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	585
AccB1I	GGYRCC	1 cut(s)	585
AccI	GTMKAC	3 cut(s)	142, 328, 739
AciI	CCGC	4 cut(s)	9, 22, 656, 698
AcoI	YGGCCR	1 cut(s)	699
AfaI	GTAC	6 cut(s)	47, 300, 587, 638, 716, 787
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	109, 291, 434, 670
AjnI	CCWGG	2 cut(s)	170, 484
AluBI	AGCT	2 cut(s)	195, 202
AluI	AGCT	2 cut(s)	195, 202
Alw26I	GTCTC	2 cut(s)	389, 459
Ama87I	CYCGRG	2 cut(s)	640, 731
AoxI	GGCC	3 cut(s)	569, 699, 723
ApeKI	GCWGC	4 cut(s)	18, 132, 199, 622
Asp718I	GGTACC	1 cut(s)	585
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	1 cut(s)	43
AvaI	CYCGRG	2 cut(s)	640, 731
AvaII	GGWCC	1 cut(s)	235
BanI	GGYRCC	1 cut(s)	585
BanII	GRGCYC	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	4 cut(s)	5, 144, 211, 609
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	686
BciT130I	CCWGG	2 cut(s)	172, 486
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	2 cut(s)	389, 459
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	6 cut(s)	19, 22, 133, 200, 623, 699
BlsI	GCNGC	6 cut(s)	20, 23, 134, 201, 624, 700
Bme1390I	CCNGG	3 cut(s)	43, 172, 486
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	2 cut(s)	640, 731
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	3 cut(s)	177, 236, 587
BmrFI	CCNGG	3 cut(s)	43, 172, 486
BmrI	ACTGGG	1 cut(s)	703
BmuI	ACTGGG	1 cut(s)	703
Bpu10I	CCTNAGC	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	592
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	5 cut(s)	12, 171, 238, 484, 702
BsaWI	WCCGGW	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	456, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	755
Bse1I	ACTGG	1 cut(s)	698
Bse3DI	GCAATG	2 cut(s)	120, 609
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	2 cut(s)	172, 486
BseDI	CCNNGG	5 cut(s)	12, 171, 238, 484, 702
BseGI	GGATG	2 cut(s)	58, 215
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	2 cut(s)	120, 609
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	698
BseX3I	CGGCCG	1 cut(s)	699
BseXI	GCAGC	4 cut(s)	5, 144, 211, 609
Bsh1285I	CGRYCG	3 cut(s)	9, 247, 702
BshFI	GGCC	3 cut(s)	571, 701, 725
BshNI	GGYRCC	1 cut(s)	585
BsiEI	CGRYCG	3 cut(s)	9, 247, 702
BsiHKCI	CYCGRG	2 cut(s)	640, 731
BsiSI	CCGG	3 cut(s)	43, 420, 756
BslFI	GGGAC	2 cut(s)	248, 467
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	389, 459
BsmFI	GGGAC	2 cut(s)	248, 467
BsmI	GAATGC	3 cut(s)	115, 166, 707
BsnI	GGCC	3 cut(s)	571, 701, 725
BsoBI	CYCGRG	2 cut(s)	640, 731
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	98, 244
BspACI	CCGC	4 cut(s)	9, 22, 656, 698
BspANI	GGCC	3 cut(s)	571, 701, 725
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	177, 236, 587
BspT107I	GGYRCC	1 cut(s)	585
BsrDI	GCAATG	2 cut(s)	120, 609
BsrFI	RCCGGY	1 cut(s)	755
BsrI	ACTGG	1 cut(s)	698
BssAI	RCCGGY	1 cut(s)	755
BssECI	CCNNGG	5 cut(s)	12, 171, 238, 484, 702
BssMI	GATC	2 cut(s)	98, 244
BssNAI	GTATAC	2 cut(s)	329, 740
BssT1I	CCWWGG	2 cut(s)	12, 238
Bst1107I	GTATAC	2 cut(s)	329, 740
Bst2UI	CCWGG	2 cut(s)	172, 486
Bst4CI	ACNGT	4 cut(s)	126, 225, 507, 744
Bst6I	CTCTTC	1 cut(s)	305
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	2 cut(s)	197, 757
BstDEI	CTNAG	1 cut(s)	26
BstDSI	CCRYGG	1 cut(s)	702
BstEII	GGTNACC	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	58, 215
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	2 cut(s)	101, 247
BstMAI	GTCTC	2 cut(s)	389, 459
BstMBI	GATC	2 cut(s)	98, 244
BstMCI	CGRYCG	3 cut(s)	9, 247, 702
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 196, 681, 704
BstNI	CCWGG	2 cut(s)	172, 486
BstNSI	RCATGY	2 cut(s)	96, 384
BstPI	GGTNACC	1 cut(s)	501
BstSCI	CCNGG	3 cut(s)	41, 170, 484
BstV1I	GCAGC	4 cut(s)	5, 144, 211, 609
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	98
BstZ17I	GTATAC	2 cut(s)	329, 740
BstZI	CGGCCG	1 cut(s)	699
BsuRI	GGCC	3 cut(s)	571, 701, 725
BtgI	CCRYGG	1 cut(s)	702
BtsCI	GGATG	2 cut(s)	58, 215
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	197, 757
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	755
Cfr13I	GGNCC	1 cut(s)	235
Csp6I	GTAC	6 cut(s)	46, 299, 586, 637, 715, 786
CspCI	CAANNNNNGTGG	2 cut(s)	614, 649
CviAII	CATG	3 cut(s)	93, 381, 598
CviJI	RGCY	7 cut(s)	18, 176, 195, 202, 571, 701, 725
CviKI_1	RGCY	7 cut(s)	18, 176, 195, 202, 571, 701, 725
CviQI	GTAC	6 cut(s)	46, 299, 586, 637, 715, 786
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	2 cut(s)	100, 246
DpnII	GATC	2 cut(s)	98, 244
EaeI	YGGCCR	1 cut(s)	699
EagI	CGGCCG	1 cut(s)	699
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
EclXI	CGGCCG	1 cut(s)	699
Eco130I	CCWWGG	2 cut(s)	12, 238
Eco24I	GRGCYC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	827
Eco47I	GGWCC	1 cut(s)	235
Eco52I	CGGCCG	1 cut(s)	699
Eco88I	CYCGRG	2 cut(s)	640, 731
Eco91I	GGTNACC	1 cut(s)	501
EcoO65I	GGTNACC	1 cut(s)	501
EcoRII	CCWGG	2 cut(s)	170, 484
EcoRV	GATATC	1 cut(s)	827
EcoT14I	CCWWGG	2 cut(s)	12, 238
EcoT38I	GRGCYC	1 cut(s)	178
ErhI	CCWWGG	2 cut(s)	12, 238
FaeI	CATG	3 cut(s)	96, 384, 601
FaqI	GGGAC	2 cut(s)	248, 467
FatI	CATG	3 cut(s)	92, 380, 597
FauI	CCCGC	1 cut(s)	663
FblI	GTMKAC	3 cut(s)	142, 328, 739
Fnu4HI	GCNGC	6 cut(s)	19, 22, 133, 200, 623, 699
FokI	GGATG	2 cut(s)	65, 202
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	6 cut(s)	19, 22, 133, 200, 623, 699
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	6 cut(s)	19, 22, 133, 200, 623, 699
HaeIII	GGCC	3 cut(s)	571, 701, 725
HapII	CCGG	3 cut(s)	43, 420, 756
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	96, 384, 601
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	2 cut(s)	58, 139
HpaII	CCGG	3 cut(s)	43, 420, 756
Hpy166II	GTNNAC	5 cut(s)	143, 329, 516, 715, 740
Hpy188I	TCNGA	2 cut(s)	415, 842
Hpy8I	GTNNAC	5 cut(s)	143, 329, 516, 715, 740
HpyAV	CCTTC	2 cut(s)	448, 815
HpyCH4III	ACNGT	4 cut(s)	126, 225, 507, 744
HpyCH4IV	ACGT	4 cut(s)	151, 212, 591, 717
HpyCH4V	TGCA	6 cut(s)	92, 113, 166, 199, 406, 625
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 196, 681, 704
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	4 cut(s)	151, 212, 591, 717
Hsp92II	CATG	3 cut(s)	96, 384, 601
HspAI	GCGC	1 cut(s)	79
KpnI	GGTACC	1 cut(s)	589
KroI	GCCGGC	1 cut(s)	755
KroNI	GCCGGC	1 cut(s)	757
Kzo9I	GATC	2 cut(s)	98, 244
LmnI	GCTCC	2 cut(s)	181, 488
Lsp1109I	GCAGC	4 cut(s)	5, 144, 211, 609
MaeII	ACGT	4 cut(s)	151, 212, 591, 717
MaeIII	GTNAC	4 cut(s)	249, 267, 314, 501
MalI	GATC	2 cut(s)	100, 246
MboI	GATC	2 cut(s)	98, 244
MboII	GAAGA	5 cut(s)	198, 279, 322, 523, 526
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	3 cut(s)	396, 455, 646
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	5 cut(s)	35, 49, 224, 492, 582
MroNI	GCCGGC	1 cut(s)	755
MseI	TTAA	3 cut(s)	227, 395, 768
MslI	CAYNNNNRTG	3 cut(s)	263, 602, 669
MspI	CCGG	3 cut(s)	43, 420, 756
MspR9I	CCNGG	3 cut(s)	43, 172, 486
Mva1269I	GAATGC	3 cut(s)	115, 166, 707
MvaI	CCWGG	2 cut(s)	172, 486
MwoI	GCNNNNNNNGC	4 cut(s)	27, 196, 681, 704
NaeI	GCCGGC	1 cut(s)	757
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	2 cut(s)	98, 244
NgoMIV	GCCGGC	1 cut(s)	755
NlaIII	CATG	3 cut(s)	96, 384, 601
NlaIV	GGNNCC	3 cut(s)	177, 236, 587
NmuCI	GTSAC	1 cut(s)	249
NspI	RCATGY	2 cut(s)	96, 384
PaeR7I	CTCGAG	2 cut(s)	640, 731
PctI	GAATGC	3 cut(s)	115, 166, 707
PdiI	GCCGGC	1 cut(s)	757
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	6 cut(s)	20, 23, 134, 201, 624, 700
Ple19I	CGATCG	1 cut(s)	247
PleI	GAGTC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	592
Psp6I	CCWGG	2 cut(s)	170, 484
PspEI	GGTNACC	1 cut(s)	501
PspGI	CCWGG	2 cut(s)	170, 484
PspN4I	GGNNCC	3 cut(s)	177, 236, 587
PspPI	GGNCC	1 cut(s)	235
PspXI	VCTCGAGB	2 cut(s)	640, 731
PsuI	RGATCY	1 cut(s)	98
PvuI	CGATCG	1 cut(s)	247
RsaI	GTAC	6 cut(s)	47, 300, 587, 638, 716, 787
RsaNI	GTAC	6 cut(s)	46, 299, 586, 637, 715, 786
RseI	CAYNNNNRTG	3 cut(s)	263, 602, 669
SaqAI	TTAA	3 cut(s)	227, 395, 768
SatI	GCNGC	6 cut(s)	19, 22, 133, 200, 623, 699
Sau3AI	GATC	2 cut(s)	98, 244
Sau96I	GGNCC	1 cut(s)	235
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	3 cut(s)	43, 172, 486
SduI	GDGCHC	1 cut(s)	178
Sfr274I	CTCGAG	2 cut(s)	640, 731
SinI	GGWCC	1 cut(s)	235
SlaI	CTCGAG	2 cut(s)	640, 731
SmiMI	CAYNNNNRTG	3 cut(s)	263, 602, 669
SmlI	CTYRAG	2 cut(s)	640, 731
SmoI	CTYRAG	2 cut(s)	640, 731
Sse9I	AATT	3 cut(s)	396, 455, 646
SsiI	CCGC	4 cut(s)	9, 22, 656, 698
StyD4I	CCNGG	3 cut(s)	41, 170, 484
StyI	CCWWGG	2 cut(s)	12, 238
TaaI	ACNGT	4 cut(s)	126, 225, 507, 744
TaiI	ACGT	4 cut(s)	154, 215, 594, 720
TaqI	TCGA	2 cut(s)	641, 732
TaqII	GACCGA	1 cut(s)	237
TasI	AATT	3 cut(s)	396, 455, 646
TauI	GCSGC	2 cut(s)	24, 701
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	227, 395, 768
Tru9I	TTAA	3 cut(s)	227, 395, 768
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	4 cut(s)	18, 132, 199, 622
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	2 cut(s)	359, 568
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	235
XceI	RCATGY	2 cut(s)	96, 384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XhoI	CTCGAG	2 cut(s)	640, 731
XmiI	GTMKAC	3 cut(s)	142, 328, 739

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.