Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0006068

Physical Location & Seq

Genomic Coordinates Forward (+)

7037283 .. 7037666

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACCGCCGATCTAGATCCCTTCACCGCCGGTCCTCCCCCAATCGGTCGCCCGAGCCATTTCTCAAATACCTAAAGCCCGGCGCGCTCGCTCAAATCCGAGACTCCCGAATCAGCAGGGCCAGATCGCACCAGCTCAATTGGCTCTCTCAGGTCCGTGTATCGCCGCCGTTGTCTCCGGTGTCCGACGCAGGTCTTCCCATGGTCAACGCGATGGAGGGATTTCCTTGCTTCTCGGGTCGGATCTTCGGCCCCAGATGCCCCCAGAGGAAGAAGCTCGCGGCCACCAAGTCAGTTATGCTCCTCAGCCCCTCGAGCCCGGTTCTCGACTCGCCAGATCCGATAATCGATTTGTTTAGTACGGACATTCTTGCTGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.09

Weight (kDa)

11.29

Isoelectric Point (pI)

83.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26960 AT5G54970
fragaria_vesca	FvH4_3g02050 FvH4_6g43180
malus_domestica	MD09G1108900.v1.1 MD17G1096900.v1.1
prunus_persica	Prupe.3G217200_v2.0.a1
pyrus_communis	pycom09g03130 pycom17g09270
rosa_chinensis	RchiOBHm_Chr2g0159281 RchiOBHm_Chr5g0002951
rosa_laevigata	RLG00000021150 RLG00000031073 RLG00000035773
rosa_multiflora	Rmu_co8060000.1_g000001 Rmu_sc0010590.1_g000004 Rmu_sc0016200.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269970
rosa_rugosa	Rorug04G0400800
rosa_samantha	Rh2AG542000 Rh2BG554600 Rh2CG524700 Rh5AG023800 Rh5CG026600 Rh5DG025100
rosa_wichuraiana	Rw2G044830 Rw5G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	182
AccII	CGCG	3 cut(s)	86, 212, 281
AciI	CCGC	4 cut(s)	7, 28, 167, 281
AclWI	GGATC	3 cut(s)	12, 251, 332
AcoI	YGGCCR	1 cut(s)	282
AfaI	GTAC	1 cut(s)	361
AfiI	CCNNNNNNNGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	136, 277
AluI	AGCT	2 cut(s)	136, 277
Alw26I	GTCTC	2 cut(s)	96, 180
AlwI	GGATC	3 cut(s)	12, 251, 332
Ama87I	CYCGRG	3 cut(s)	53, 235, 313
AoxI	GGCC	3 cut(s)	120, 250, 282
ApeKI	GCWGC	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	86, 88
AspS9I	GGNCC	4 cut(s)	33, 120, 154, 251
AsuC2I	CCSGG	2 cut(s)	81, 320
AsuHPI	GGTGA	1 cut(s)	17
AvaI	CYCGRG	3 cut(s)	53, 235, 313
AvaII	GGWCC	2 cut(s)	33, 154
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	208
BceAI	ACGGC	1 cut(s)	154
BcnI	CCSGG	2 cut(s)	81, 320
BcoDI	GTCTC	2 cut(s)	96, 180
BfaI	CTAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	3 cut(s)	167, 282, 375
BlsI	GCNGC	3 cut(s)	168, 283, 376
Bme1390I	CCNGG	2 cut(s)	81, 320
Bme18I	GGWCC	2 cut(s)	33, 154
BmeT110I	CYCGRG	3 cut(s)	53, 235, 313
BmgT120I	GGNCC	4 cut(s)	33, 120, 154, 251
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	81, 320
BmsI	GCATC	1 cut(s)	248
BoxI	GACNNNNGTC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	305
BpuMI	CCSGG	2 cut(s)	81, 320
Bsa29I	ATCGAT	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	16
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse118I	RCCGGY	1 cut(s)	30
Bse8I	GATNNNNATC	1 cut(s)	16
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	16
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	164, 319
BsePI	GCGCGC	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	3 cut(s)	86, 212, 281
Bsh1285I	CGRYCG	1 cut(s)	50
BshFI	GGCC	3 cut(s)	122, 252, 284
BshVI	ATCGAT	1 cut(s)	348
BsiEI	CGRYCG	1 cut(s)	50
BsiHKCI	CYCGRG	3 cut(s)	53, 235, 313
BsiSI	CCGG	4 cut(s)	31, 81, 179, 320
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	2 cut(s)	96, 180
BsnI	GGCC	3 cut(s)	122, 252, 284
BsoBI	CYCGRG	3 cut(s)	53, 235, 313
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	11, 17, 125, 243, 337
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	4 cut(s)	7, 28, 167, 281
BspANI	GGCC	3 cut(s)	122, 252, 284
BspCNI	CTCAG	2 cut(s)	163, 318
BspDI	ATCGAT	1 cut(s)	348
BspFNI	CGCG	3 cut(s)	86, 212, 281
BspLI	GGNNCC	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	182
BspPI	GGATC	3 cut(s)	12, 251, 332
BsrFI	RCCGGY	1 cut(s)	30
BssAI	RCCGGY	1 cut(s)	30
BssECI	CCNNGG	1 cut(s)	201
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	5 cut(s)	11, 17, 125, 243, 337
BssT1I	CCWWGG	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	86, 90, 279
BstDEI	CTNAG	2 cut(s)	150, 305
BstDSI	CCRYGG	1 cut(s)	201
BstFNI	CGCG	3 cut(s)	86, 212, 281
BstHHI	GCGC	2 cut(s)	86, 88
BstKTI	GATC	5 cut(s)	14, 20, 128, 246, 340
BstMAI	GTCTC	2 cut(s)	96, 180
BstMBI	GATC	5 cut(s)	11, 17, 125, 243, 337
BstMCI	CGRYCG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 142, 258, 315
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	79, 318
BstUI	CGCG	3 cut(s)	86, 212, 281
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	3 cut(s)	17, 243, 337
BstYI	RGATCY	3 cut(s)	17, 243, 337
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	122, 252, 284
BsuTUI	ATCGAT	1 cut(s)	348
BtgI	CCRYGG	1 cut(s)	201
BtgZI	GCGATG	1 cut(s)	227
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	3 cut(s)	86, 90, 279
CfoI	GCGC	2 cut(s)	86, 88
Cfr10I	RCCGGY	1 cut(s)	30
Cfr13I	GGNCC	4 cut(s)	33, 120, 154, 251
ClaI	ATCGAT	1 cut(s)	348
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	1 cut(s)	202
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	2 cut(s)	150, 305
DpnI	GATC	5 cut(s)	13, 19, 127, 245, 339
DpnII	GATC	5 cut(s)	11, 17, 125, 243, 337
EaeI	YGGCCR	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	2 cut(s)	33, 154
Eco88I	CYCGRG	3 cut(s)	53, 235, 313
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	1 cut(s)	205
FaiI	YATR	2 cut(s)	203, 299
FatI	CATG	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	167, 282, 375
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	3 cut(s)	167, 282, 375
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	2 cut(s)	85, 87
GluI	GCNGC	3 cut(s)	167, 282, 375
HaeIII	GGCC	3 cut(s)	122, 252, 284
HapII	CCGG	4 cut(s)	31, 81, 179, 320
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	2 cut(s)	86, 88
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	2 cut(s)	84, 86
HinP1I	GCGC	2 cut(s)	84, 86
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	3 cut(s)	104, 111, 329
HpaII	CCGG	4 cut(s)	31, 81, 179, 320
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	208
Hpy188I	TCNGA	4 cut(s)	101, 187, 243, 342
Hpy188III	TCNNGA	3 cut(s)	15, 108, 326
Hpy8I	GTNNAC	1 cut(s)	208
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 142, 258, 315
HpyF3I	CTNAG	2 cut(s)	150, 305
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	2 cut(s)	84, 86
Kzo9I	GATC	5 cut(s)	11, 17, 125, 243, 337
LmnI	GCTCC	1 cut(s)	306
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	15
MalI	GATC	5 cut(s)	13, 19, 127, 245, 339
MboI	GATC	5 cut(s)	11, 17, 125, 243, 337
MboII	GAAGA	3 cut(s)	188, 238, 283
MfeI	CAATTG	1 cut(s)	139
MflI	RGATCY	3 cut(s)	17, 243, 337
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	1 cut(s)	139
MlyI	GAGTC	2 cut(s)	98, 323
MmeI	TCCRAC	2 cut(s)	210, 221
MnlI	CCTC	5 cut(s)	46, 211, 261, 314, 322
MspI	CCGG	4 cut(s)	31, 81, 179, 320
MspR9I	CCNGG	2 cut(s)	81, 320
MunI	CAATTG	1 cut(s)	139
MvnI	CGCG	3 cut(s)	86, 212, 281
MwoI	GCNNNNNNNGC	4 cut(s)	85, 142, 258, 315
NciI	CCSGG	2 cut(s)	81, 320
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	5 cut(s)	11, 17, 125, 243, 337
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	313
PauI	GCGCGC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	3 cut(s)	168, 283, 376
PleI	GAGTC	2 cut(s)	98, 323
PpsI	GAGTC	2 cut(s)	98, 323
PshAI	GACNNNNGTC	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	4 cut(s)	33, 120, 154, 251
PspXI	VCTCGAGB	1 cut(s)	313
PsuI	RGATCY	3 cut(s)	17, 243, 337
PteI	GCGCGC	1 cut(s)	84
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
SatI	GCNGC	3 cut(s)	167, 282, 375
Sau3AI	GATC	5 cut(s)	11, 17, 125, 243, 337
Sau96I	GGNCC	4 cut(s)	33, 120, 154, 251
SchI	GAGTC	2 cut(s)	98, 323
ScrFI	CCNGG	2 cut(s)	81, 320
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	5 cut(s)	75, 138, 156, 196, 279
SfaNI	GCATC	1 cut(s)	248
Sfr274I	CTCGAG	1 cut(s)	313
SinI	GGWCC	2 cut(s)	33, 154
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	1 cut(s)	139
SsiI	CCGC	4 cut(s)	7, 28, 167, 281
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	79, 318
StyI	CCWWGG	1 cut(s)	201
TaqI	TCGA	3 cut(s)	314, 327, 348
TaqII	GACCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	139
TauI	GCSGC	2 cut(s)	169, 284
TfiI	GAWTC	1 cut(s)	111
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	146, 377
VpaK11BI	GGWCC	2 cut(s)	33, 154
XbaI	TCTAGA	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	313
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.