pycom17g12790

Phytoene synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0003237
Physical Location & Seq
Reverse (-)
10507489 .. 10510296
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1191 bp
ATGTCAGGTCTTCTTCTCTGGGTGGTGAGTCCCAAAGAGAATGCCAGCTCTCTGCTGGGTCTGTTGCCGAGAATTTGCACCCCAAGGAGGTCTAAATTGTGCTCAAAGCTGGGTTTTTCAAGTGGGGTTTTGGCCTACTCGGGTGCGGTTGCAAATCCAGCCAGATCTTCAGAGGAGAAGGTGTATGAAGTGGTGCTGAAGCAGGCTGCTCTAATGAGAGAACCGAACACGGTAAAAAAGAAATCTTTGGATTTGGATGAACGGATTACTGAAGGTTTGAACAACTGGGATTTACTGAATAAGGCGTATGACCGGTGTGGTGAGGTCTGTGCGGAATATGCCAAGACTTTTTACCTAGGGACATTGCTCATGACACCGGAGCGGCGACGAGCTGTTTGGGCAATCTATGTGTGGTGCAGAAGGACAGATGAGCTAGTGGATGGACCTAATGCTTCATACATTACACCCAAAGCTCTTGACCGATGGGAGAAAAGACTGACAGATCGATCCCACAGCCGGCCTTACGATATGTATGATGCTGCTCTATCTGATACAGTCGCCAAGTACCCTGTTGACATTCAGCCCTTCAAAGACATGGTAGAAGGAATGAGATTAGACTTGAGAAAATCAAGATACCAGAACTTTGATGAACTTTACCTTTACTGCTACTATGTTGCTGGAACTGTTGGATTGATGAGTGTTCCGGTGATGGGGATATCCCCGGAATCAAAGGCCTCAACAGAGTGCGTTTACAATGCTGCATTGGCCCTTGGAATTGCTAATCAGCTCACTAACATTCTCAGAGATGTTGGAGAAGATGCTAGGAGAGGAAGAGTATATCTCCCACAAGATGAGCTTGCCCAAGCCGGCCTATCAGACGATGACATCTTTCGTGGGAAGGTGACTGACAAGTGGCAAAGTTTCATGAAGGGACAAATAAAGAGAGCTAGAATGTTCTTTGATGAGGCTGAGAAGGGTGTCTCAGAGCTCAACTCAGCTAGTAGATGGCCAGTATGGGCATCTTTGTTGCTGTACAGGCAGATTCTAGATGCAATTGAAGCAAATGGTTATGACAATTTCACAAAAAGGGCATATGTGGGAAAAGCAAAGAAGTTAGCATCATTGCCTGTGGCCTATGGAAGGGCCATTTTAGGACCCTCCAAATTAACTAAGCAGTTGGTGCCTAGATGA

Protein Analysis

397

Amino Acids

44.67

Weight (kDa)

9.15

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SQS_PSY PF00494 112 - 368 1.3e-75 Squalene/phytoene synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1180
AccBSI CCGCTC 1 cut(s) 382
AciI CCGC 3 cut(s) 146, 332, 382
AclWI GGATC 1 cut(s) 501
AcoI YGGCCR 1 cut(s) 1007
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 3 cut(s) 153, 218, 291
AfaI GTAC 2 cut(s) 566, 1034
AfiI CCNNNNNNNGG 4 cut(s) 87, 516, 710, 1140
AgeI ACCGGT 1 cut(s) 312
AgsI TTSAA 4 cut(s) 120, 280, 589, 1058
Alw21I GWGCWC 2 cut(s) 104, 990
Alw26I GTCTC 1 cut(s) 985
AlwI GGATC 1 cut(s) 501
Ama87I CYCGRG 1 cut(s) 139
AoxI GGCC 8 cut(s) 132, 518, 732, 765, 868, 1007, 1131, 1143
ApeKI GCWGC 3 cut(s) 206, 539, 758
ApoI RAATTY 1 cut(s) 72
ArsI GACNNNNNNTTYG 2 cut(s) 378, 410
AsiGI ACCGGT 1 cut(s) 312
AspA2I CCTAGG 1 cut(s) 355
AspS9I GGNCC 4 cut(s) 443, 766, 1143, 1154
AsuC2I CCSGG 1 cut(s) 722
AsuHPI GGTGA 4 cut(s) 37, 332, 718, 913
AvaI CYCGRG 1 cut(s) 139
AvaII GGWCC 2 cut(s) 443, 1154
AvrII CCTAGG 1 cut(s) 355
BalI TGGCCA 1 cut(s) 1009
BanI GGYRCC 1 cut(s) 1180
BanII GRGCYC 1 cut(s) 990
BbsI GAAGAC 1 cut(s) 2
Bbv12I GWGCWC 2 cut(s) 104, 990
BbvI GCAGC 3 cut(s) 193, 526, 745
BccI CCATC 4 cut(s) 434, 477, 703, 999
BcnI CCSGG 1 cut(s) 722
BcoDI GTCTC 1 cut(s) 985
BfaI CTAG 7 cut(s) 356, 434, 822, 948, 999, 1046, 1185
BglII AGATCT 1 cut(s) 164
BisI GCNGC 4 cut(s) 207, 383, 540, 759
BlnI CCTAGG 1 cut(s) 355
BlsI GCNGC 4 cut(s) 208, 384, 541, 760
Bme1390I CCNGG 1 cut(s) 722
Bme18I GGWCC 2 cut(s) 443, 1154
BmeT110I CYCGRG 1 cut(s) 139
BmgT120I GGNCC 4 cut(s) 443, 766, 1143, 1154
BmiI GGNNCC 2 cut(s) 1156, 1182
BmrFI CCNGG 1 cut(s) 722
BmrI ACTGGG 1 cut(s) 295
BmsI GCATC 5 cut(s) 526, 808, 1028, 1039, 1127
BmuI ACTGGG 1 cut(s) 295
BpiI GAAGAC 1 cut(s) 2
BplI GAGNNNNNCTC 4 cut(s) 825, 857, 977, 1009
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 1 cut(s) 722
Bsa29I ATCGAT 1 cut(s) 505
BsaJI CCNNGG 4 cut(s) 83, 355, 720, 769
BsaWI WCCGGW 3 cut(s) 312, 376, 703
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bsc4I CCNNNNNNNGG 4 cut(s) 87, 516, 710, 1140
Bse118I RCCGGY 3 cut(s) 312, 516, 866
Bse1I ACTGG 2 cut(s) 290, 1010
Bse3DI GCAATG 2 cut(s) 362, 1121
BseCI ATCGAT 1 cut(s) 505
BseDI CCNNGG 4 cut(s) 83, 355, 720, 769
BseGI GGATG 2 cut(s) 262, 445
BseLI CCNNNNNNNGG 4 cut(s) 87, 516, 710, 1140
BseMI GCAATG 2 cut(s) 362, 1121
BseMII CTCAG 4 cut(s) 814, 960, 996, 1008
BseNI ACTGG 2 cut(s) 290, 1010
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 3 cut(s) 193, 526, 745
BseYI CCCAGC 2 cut(s) 55, 109
BsgI GTGCAG 1 cut(s) 436
BshFI GGCC 8 cut(s) 134, 520, 734, 767, 870, 1009, 1133, 1145
BshNI GGYRCC 1 cut(s) 1180
BshTI ACCGGT 1 cut(s) 312
BshVI ATCGAT 1 cut(s) 505
BsiHKAI GWGCWC 2 cut(s) 104, 990
BsiHKCI CYCGRG 1 cut(s) 139
BsiSI CCGG 6 cut(s) 313, 377, 517, 704, 722, 867
BslFI GGGAC 3 cut(s) 15, 373, 945
BslI CCNNNNNNNGG 4 cut(s) 87, 516, 710, 1140
BsmAI GTCTC 1 cut(s) 985
BsmFI GGGAC 3 cut(s) 15, 373, 945
BsmI GAATGC 1 cut(s) 46
BsnI GGCC 8 cut(s) 134, 520, 734, 767, 870, 1009, 1133, 1145
BsoBI CYCGRG 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 104, 990
Bsp1407I TGTACA 1 cut(s) 1032
Bsp143I GATC 3 cut(s) 164, 502, 506
BspACI CCGC 3 cut(s) 146, 332, 382
BspANI GGCC 8 cut(s) 134, 520, 734, 767, 870, 1009, 1133, 1145
BspCNI CTCAG 4 cut(s) 813, 961, 995, 1007
BspDI ATCGAT 1 cut(s) 505
BspHI TCATGA 2 cut(s) 369, 924
BspLI GGNNCC 2 cut(s) 1156, 1182
BspPI GGATC 1 cut(s) 501
BspT107I GGYRCC 1 cut(s) 1180
BsrBI CCGCTC 1 cut(s) 382
BsrDI GCAATG 2 cut(s) 362, 1121
BsrFI RCCGGY 3 cut(s) 312, 516, 866
BsrGI TGTACA 1 cut(s) 1032
BsrI ACTGG 2 cut(s) 290, 1010
BssAI RCCGGY 3 cut(s) 312, 516, 866
BssECI CCNNGG 4 cut(s) 83, 355, 720, 769
BssMI GATC 3 cut(s) 164, 502, 506
BssT1I CCWWGG 3 cut(s) 83, 355, 769
Bst4CI ACNGT 3 cut(s) 232, 556, 685
Bst6I CTCTTC 1 cut(s) 826
BstAPI GCANNNNNTGC 1 cut(s) 1180
BstAUI TGTACA 1 cut(s) 1032
BstC8I GCNNGC 5 cut(s) 46, 204, 518, 858, 868
BstDEI CTNAG 5 cut(s) 800, 969, 982, 994, 1170
BstENI CCTNNNNNAGG 1 cut(s) 1138
BstF5I GGATG 2 cut(s) 262, 445
BstKTI GATC 3 cut(s) 167, 505, 509
BstMAI GTCTC 1 cut(s) 985
BstMBI GATC 3 cut(s) 164, 502, 506
BstMWI GCNNNNNNNGC 7 cut(s) 158, 338, 398, 764, 1036, 1058, 1180
BstSCI CCNGG 1 cut(s) 720
BstV1I GCAGC 3 cut(s) 193, 526, 745
BstV2I GAAGAC 1 cut(s) 2
BstX2I RGATCY 1 cut(s) 164
BstYI RGATCY 1 cut(s) 164
Bsu15I ATCGAT 1 cut(s) 505
BsuRI GGCC 8 cut(s) 134, 520, 734, 767, 870, 1009, 1133, 1145
BsuTUI ATCGAT 1 cut(s) 505
BtsCI GGATG 2 cut(s) 262, 445
Cac8I GCNNGC 5 cut(s) 46, 204, 518, 858, 868
CciI TCATGA 2 cut(s) 369, 924
Cfr10I RCCGGY 3 cut(s) 312, 516, 866
Cfr13I GGNCC 4 cut(s) 443, 766, 1143, 1154
ClaI ATCGAT 1 cut(s) 505
Csp6I GTAC 2 cut(s) 565, 1033
CspAI ACCGGT 1 cut(s) 312
CviAII CATG 3 cut(s) 370, 595, 925
CviQI GTAC 2 cut(s) 565, 1033
DdeI CTNAG 5 cut(s) 800, 969, 982, 994, 1170
DpnI GATC 3 cut(s) 166, 504, 508
DpnII GATC 3 cut(s) 164, 502, 506
EaeI YGGCCR 1 cut(s) 1007
Eam1104I CTCTTC 1 cut(s) 826
EarI CTCTTC 1 cut(s) 826
Ecl136II GAGCTC 1 cut(s) 988
Eco130I CCWWGG 3 cut(s) 83, 355, 769
Eco147I AGGCCT 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 990
Eco32I GATATC 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 443, 1154
Eco53kI GAGCTC 1 cut(s) 988
Eco57I CTGAAG 3 cut(s) 153, 218, 291
Eco88I CYCGRG 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 988
EcoNI CCTNNNNNAGG 1 cut(s) 1138
EcoO109I RGGNCCY 1 cut(s) 1154
EcoRV GATATC 1 cut(s) 717
EcoT14I CCWWGG 3 cut(s) 83, 355, 769
EcoT38I GRGCYC 1 cut(s) 990
ErhI CCWWGG 3 cut(s) 83, 355, 769
FaeI CATG 3 cut(s) 373, 598, 928
FalI AAGNNNNNCTT 2 cut(s) 840, 872
FaqI GGGAC 3 cut(s) 15, 373, 945
FatI CATG 3 cut(s) 369, 594, 924
FauNDI CATATG 1 cut(s) 1093
Fnu4HI GCNGC 4 cut(s) 207, 383, 540, 759
FokI GGATG 2 cut(s) 269, 452
FriOI GRGCYC 1 cut(s) 990
Fsp4HI GCNGC 4 cut(s) 207, 383, 540, 759
FspBI CTAG 7 cut(s) 356, 434, 822, 948, 999, 1046, 1185
GluI GCNGC 4 cut(s) 207, 383, 540, 759
GsaI CCCAGC 2 cut(s) 59, 113
HaeIII GGCC 8 cut(s) 134, 520, 734, 767, 870, 1009, 1133, 1145
HapII CCGG 6 cut(s) 313, 377, 517, 704, 722, 867
Hin1II CATG 3 cut(s) 373, 598, 928
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 3 cut(s) 28, 725, 1042
HpaII CCGG 6 cut(s) 313, 377, 517, 704, 722, 867
HphI GGTGA 4 cut(s) 37, 332, 718, 913
Hpy166II GTNNAC 2 cut(s) 574, 751
Hpy188I TCNGA 5 cut(s) 172, 550, 803, 877, 985
Hpy188III TCNNGA 5 cut(s) 370, 476, 630, 925, 1046
Hpy8I GTNNAC 2 cut(s) 574, 751
Hpy99I CGWCG 1 cut(s) 390
HpyAV CCTTC 9 cut(s) 172, 266, 414, 595, 596, 892, 922, 967, 1134
HpyCH4III ACNGT 3 cut(s) 232, 556, 685
HpyCH4V TGCA 5 cut(s) 78, 152, 417, 761, 1052
HpyF10VI GCNNNNNNNGC 7 cut(s) 158, 338, 398, 764, 1036, 1058, 1180
HpyF3I CTNAG 5 cut(s) 800, 969, 982, 994, 1170
Hsp92II CATG 3 cut(s) 373, 598, 928
KroI GCCGGC 2 cut(s) 516, 866
KroNI GCCGGC 2 cut(s) 518, 868
Kzo9I GATC 3 cut(s) 164, 502, 506
LmnI GCTCC 1 cut(s) 379
Lsp1109I GCAGC 3 cut(s) 193, 526, 745
LweI GCATC 5 cut(s) 526, 808, 1028, 1039, 1127
MaeI CTAG 7 cut(s) 356, 434, 822, 948, 999, 1046, 1185
MaeIII GTNAC 1 cut(s) 901
MalI GATC 3 cut(s) 166, 504, 508
MbiI CCGCTC 1 cut(s) 382
MboI GATC 3 cut(s) 164, 502, 506
MboII GAAGA 4 cut(s) 5, 159, 827, 843
MfeI CAATTG 1 cut(s) 1053
MflI RGATCY 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 104, 990
MlsI TGGCCA 1 cut(s) 1009
MluCI AATT 6 cut(s) 72, 95, 774, 1053, 1075, 1163
MluNI TGGCCA 1 cut(s) 1009
MlyI GAGTC 1 cut(s) 37
MmeI TCCRAC 2 cut(s) 667, 790
MnlI CCTC 7 cut(s) 81, 166, 316, 745, 821, 958, 1168
Mox20I TGGCCA 1 cut(s) 1009
MroNI GCCGGC 2 cut(s) 516, 866
MscI TGGCCA 1 cut(s) 1009
MseI TTAA 1 cut(s) 1166
Msp20I TGGCCA 1 cut(s) 1009
MspI CCGG 6 cut(s) 313, 377, 517, 704, 722, 867
MspR9I CCNGG 1 cut(s) 722
MunI CAATTG 1 cut(s) 1053
Mva1269I GAATGC 1 cut(s) 46
MwoI GCNNNNNNNGC 7 cut(s) 158, 338, 398, 764, 1036, 1058, 1180
NaeI GCCGGC 2 cut(s) 518, 868
NciI CCSGG 1 cut(s) 722
NdeI CATATG 1 cut(s) 1093
NdeII GATC 3 cut(s) 164, 502, 506
NgoMIV GCCGGC 2 cut(s) 516, 866
NlaIII CATG 3 cut(s) 373, 598, 928
NlaIV GGNNCC 2 cut(s) 1156, 1182
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 901
PagI TCATGA 2 cut(s) 369, 924
PceI AGGCCT 1 cut(s) 734
PctI GAATGC 1 cut(s) 46
PdiI GCCGGC 2 cut(s) 518, 868
PfeI GAWTC 2 cut(s) 725, 1042
PinAI ACCGGT 1 cut(s) 312
PkrI GCNGC 4 cut(s) 208, 384, 541, 760
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PpuMI RGGWCCY 1 cut(s) 1154
Psp124BI GAGCTC 1 cut(s) 990
Psp5II RGGWCCY 1 cut(s) 1154
PspFI CCCAGC 2 cut(s) 55, 109
PspN4I GGNNCC 2 cut(s) 1156, 1182
PspPI GGNCC 4 cut(s) 443, 766, 1143, 1154
PspPPI RGGWCCY 1 cut(s) 1154
PsuI RGATCY 1 cut(s) 164
RsaI GTAC 2 cut(s) 566, 1034
RsaNI GTAC 2 cut(s) 565, 1033
SacI GAGCTC 1 cut(s) 990
SaqAI TTAA 1 cut(s) 1166
SatI GCNGC 4 cut(s) 207, 383, 540, 759
Sau3AI GATC 3 cut(s) 164, 502, 506
Sau96I GGNCC 4 cut(s) 443, 766, 1143, 1154
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 722
SduI GDGCHC 2 cut(s) 104, 990
SfaNI GCATC 5 cut(s) 526, 808, 1028, 1039, 1127
SinI GGWCC 2 cut(s) 443, 1154
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
Sse9I AATT 6 cut(s) 72, 95, 774, 1053, 1075, 1163
SseBI AGGCCT 1 cut(s) 734
SsiI CCGC 3 cut(s) 146, 332, 382
SspMI CTAG 7 cut(s) 356, 434, 822, 948, 999, 1046, 1185
SstI GAGCTC 1 cut(s) 990
StuI AGGCCT 1 cut(s) 734
StyD4I CCNGG 1 cut(s) 720
StyI CCWWGG 3 cut(s) 83, 355, 769
TaaI ACNGT 3 cut(s) 232, 556, 685
TaqI TCGA 1 cut(s) 505
TaqII GACCGA 1 cut(s) 495
TasI AATT 6 cut(s) 72, 95, 774, 1053, 1075, 1163
TatI WGTACW 1 cut(s) 1032
TauI GCSGC 1 cut(s) 385
TfiI GAWTC 2 cut(s) 725, 1042
Tru1I TTAA 1 cut(s) 1166
Tru9I TTAA 1 cut(s) 1166
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 3 cut(s) 206, 539, 758
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 6 cut(s) 201, 273, 444, 663, 913, 941
TspGWI ACGGA 1 cut(s) 277
VpaK11BI GGWCC 2 cut(s) 443, 1154
XagI CCTNNNNNAGG 1 cut(s) 1138
XapI RAATTY 1 cut(s) 72
XbaI TCTAGA 1 cut(s) 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 52
XmaJI CCTAGG 1 cut(s) 355
XspI CTAG 7 cut(s) 356, 434, 822, 948, 999, 1046, 1185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.