Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004717

Physical Location & Seq

Genomic Coordinates Reverse (-)

15809562 .. 15813178

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGTTAAAGGTGGTTTATTGAAGGATGATGCAGACTGGTCGACTCTAGGAGTAAAAGAGGGTCAAAAATTGATGATGATGGGGACAGCAGATGAGGTTGTCAAGGCTCCAGAGAAGGCTATTGTATTTGCAGAAGATCTCCCAGAAGAAGAACAAGCGCTTAACTTGGGTTATGGTGCTGGTCTATTTAACCTGGGAAACACCTGTTATATGAACTCCACCATACAGTGTCTGCATTCTGTTCCAGAGTTGAAATCAGCTTTGATCAAGTATTCACATTCTGGAAGAAGCAATGATGTGGATCAGACTTCTCATATGTTGACTATTGCAACTCGTGATTTATTTAGTGAATTGGATAAAAGTGTCAAGGCTGTGGCACCCATGCAATTTTGGATGGTATTACGCAAAAAGTATCCTCAATTTGGTCAGCAGCATAATAGTACTTTCATGCAGCAGGATGCTGAAGAATGTTGGTCACAGCTTTTATACACCCTTTCTCAATCTCTAAGATCGACAGGTTCTAGTGAAAGTCCAGACTCTGTTAAAGCCCTTTTCGGCATTGAACTTGTTAGCAGGGTGCACTGCGTAGAAAGTGGGGAAGAAAGCTCAGAAACAGAGTCAGTTTATTCTCTGAAGTGCCACATATCACATGAGGTGAACCATTTGCATGAAGGGTTAAAACATGGTTTAAAATCAGAATTGGAAAAAAACTCACCTTCCTTAGGGCGTAGTGCAATCTACGTCAAGGAGTCTCTTATCAATGGCCTTCCGAGGTACTTGACCATTCAGTTTGTACGCTTTTTCTGGAAAAGGGAATCAAATCAGAAGGCCAAGATTTTGCGGAAAGTCGATTACCCTTTGCAATTGGATATTTTTGATCTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005911 GO:0006464 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016579 GO:0019538 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0055044 GO:0070646 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UCH ubiquitin

Protein Analysis

296

Amino Acids

33.23

Weight (kDa)

5.95

Isoelectric Point (pI)

48.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UCH_1	PF13423	60 - 216	4.3e-07	Ubiquitin carboxyl-terminal hydrolase
UCH	PF00443	61 - 294	3.1e-39	Ubiquitin carboxyl-terminal hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004717)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51710 AT1G51710 AT3G21280 AT3G21280
fragaria_vesca	FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980 FvH4_6g32980
malus_domestica	MD09G1195900.v1.1 MD17G1176500.v1.1
prunus_persica	Prupe.3G052400_v2.0.a1 Prupe.3G052400_v2.0.a1
pyrus_communis	pycom09g11300 pycom12494g00050 pycom17g18440
rosa_chinensis	RchiOBHm_Chr2g0142531
rosa_laevigata	RLG00000019963
rosa_multiflora	Rmu_sc0007525.1_g000013 Rmu_sc0013104.1_g000001 Rmu_sc0040796.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102550
rosa_rugosa	Rorug02G0373600 Rorug02G0373700 Rorug02G0373800 Rorug02G0373800
rosa_samantha	Rh2AG425000 Rh2BG434900 Rh2CG411600 Rh2DG444900
rosa_wichuraiana	Rw2G034860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	41
AciI	CCGC	1 cut(s)	841
AclWI	GGATC	1 cut(s)	309
AcuI	CTGAAG	2 cut(s)	483, 653
AfaI	GTAC	3 cut(s)	442, 776, 795
AfeI	AGCGCT	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	422, 722
AgsI	TTSAA	3 cut(s)	22, 253, 563
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	260, 481, 606
AluI	AGCT	3 cut(s)	260, 481, 606
Alw21I	GWGCWC	1 cut(s)	582
Alw26I	GTCTC	1 cut(s)	756
Alw44I	GTGCAC	1 cut(s)	578
AlwI	GGATC	1 cut(s)	309
AlwNI	CAGNNNCTG	2 cut(s)	232, 539
Aor51HI	AGCGCT	1 cut(s)	159
AoxI	GGCC	2 cut(s)	763, 828
ApaLI	GTGCAC	1 cut(s)	578
ApeKI	GCWGC	2 cut(s)	430, 451
AspLEI	GCGC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	667, 705
AxyI	CCTNAGG	1 cut(s)	721
BaeGI	GKGCMC	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	376
BauI	CACGAG	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	582
BbvI	GCAGC	2 cut(s)	442, 463
BccI	CCATC	2 cut(s)	73, 388
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	756
BfaI	CTAG	2 cut(s)	47, 522
BfoI	RGCGCY	1 cut(s)	161
BfuI	GTATCC	1 cut(s)	423
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	2 cut(s)	431, 452
BlsI	GCNGC	2 cut(s)	432, 453
BmcAI	AGTACT	1 cut(s)	442
Bme1390I	CCNGG	1 cut(s)	194
BmiI	GGNNCC	2 cut(s)	108, 378
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	19, 448
BpmI	CTGGAG	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	300
BsaJI	CCNNGG	2 cut(s)	193, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	422, 722
Bse1I	ACTGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	721
Bse3DI	GCAATG	1 cut(s)	298
Bse8I	GATNNNNATC	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	193, 770
BseGI	GGATG	3 cut(s)	31, 399, 463
BseJI	GATNNNNATC	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	422, 722
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	1 cut(s)	41
BseSI	GKGCMC	1 cut(s)	582
BseXI	GCAGC	2 cut(s)	442, 463
BshFI	GGCC	2 cut(s)	765, 830
BshNI	GGYRCC	1 cut(s)	376
BsiHKAI	GWGCWC	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	2 cut(s)	422, 722
BsmAI	GTCTC	1 cut(s)	756
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	1 cut(s)	235
BsnI	GGCC	2 cut(s)	765, 830
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	5 cut(s)	136, 264, 301, 509, 877
BspACI	CCGC	1 cut(s)	841
BspANI	GGCC	2 cut(s)	765, 830
BspCNI	CTCAG	1 cut(s)	620
BspLI	GGNNCC	2 cut(s)	108, 378
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	376
BsrDI	GCAATG	1 cut(s)	298
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	193, 770
BssMI	GATC	5 cut(s)	136, 264, 301, 509, 877
BssSI	CACGAG	1 cut(s)	333
Bst2BI	CACGAG	1 cut(s)	333
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	506, 607, 721
BstENI	CCTNNNNNAGG	1 cut(s)	720
BstF5I	GGATG	3 cut(s)	31, 399, 463
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	5 cut(s)	139, 267, 304, 512, 880
BstMAI	GTCTC	1 cut(s)	756
BstMBI	GATC	5 cut(s)	136, 264, 301, 509, 877
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSLI	GKGCMC	1 cut(s)	582
BstV1I	GCAGC	2 cut(s)	442, 463
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	721
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	765, 830
BtsCI	GGATG	3 cut(s)	31, 399, 463
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	2 cut(s)	233, 580
CaiI	CAGNNNCTG	2 cut(s)	232, 539
CfoI	GCGC	1 cut(s)	160
Csp6I	GTAC	3 cut(s)	441, 775, 794
CviAII	CATG	5 cut(s)	382, 448, 650, 668, 683
CviJI	RGCY	9 cut(s)	107, 119, 260, 371, 481, 548, 606, 765, 830
CviKI_1	RGCY	9 cut(s)	107, 119, 260, 371, 481, 548, 606, 765, 830
CviQI	GTAC	3 cut(s)	441, 775, 794
DdeI	CTNAG	3 cut(s)	506, 607, 721
DpnI	GATC	5 cut(s)	138, 266, 303, 511, 879
DpnII	GATC	5 cut(s)	136, 264, 301, 509, 877
DraI	TTTAAA	1 cut(s)	690
Eco47III	AGCGCT	1 cut(s)	159
Eco57I	CTGAAG	2 cut(s)	483, 653
Eco81I	CCTNAGG	1 cut(s)	721
EcoNI	CCTNNNNNAGG	1 cut(s)	720
EcoRII	CCWGG	1 cut(s)	192
FaeI	CATG	5 cut(s)	385, 451, 653, 671, 686
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	5 cut(s)	381, 447, 649, 667, 682
FauNDI	CATATG	1 cut(s)	315
FbaI	TGATCA	1 cut(s)	264
FblI	GTMKAC	1 cut(s)	41
Fnu4HI	GCNGC	2 cut(s)	431, 452
FokI	GGATG	3 cut(s)	38, 406, 470
Fsp4HI	GCNGC	2 cut(s)	431, 452
FspBI	CTAG	2 cut(s)	47, 522
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	431, 452
GsuI	CTGGAG	1 cut(s)	93
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	2 cut(s)	765, 830
HhaI	GCGC	1 cut(s)	160
Hin1II	CATG	5 cut(s)	385, 451, 653, 671, 686
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HincII	GTYRAC	2 cut(s)	42, 321
HindII	GTYRAC	2 cut(s)	42, 321
HinfI	GANTC	5 cut(s)	43, 536, 617, 749, 815
HphI	GGTGA	2 cut(s)	667, 705
Hpy166II	GTNNAC	4 cut(s)	42, 321, 580, 658
Hpy188I	TCNGA	6 cut(s)	306, 610, 633, 697, 771, 825
Hpy188III	TCNNGA	6 cut(s)	110, 245, 282, 335, 533, 805
Hpy8I	GTNNAC	4 cut(s)	42, 321, 580, 658
HpyAV	CCTTC	6 cut(s)	16, 109, 665, 726, 776, 820
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	741
HpyF3I	CTNAG	3 cut(s)	506, 607, 721
HpySE526I	ACGT	1 cut(s)	741
Hsp92II	CATG	5 cut(s)	385, 451, 653, 671, 686
HspAI	GCGC	1 cut(s)	158
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	5 cut(s)	136, 264, 301, 509, 877
LmnI	GCTCC	1 cut(s)	112
Lsp1109I	GCAGC	2 cut(s)	442, 463
LweI	GCATC	2 cut(s)	19, 448
MaeI	CTAG	2 cut(s)	47, 522
MaeII	ACGT	1 cut(s)	741
MaeIII	GTNAC	1 cut(s)	474
MalI	GATC	5 cut(s)	138, 266, 303, 511, 879
MboI	GATC	5 cut(s)	136, 264, 301, 509, 877
MboII	GAAGA	6 cut(s)	146, 158, 161, 297, 476, 611
MfeI	CAATTG	1 cut(s)	863
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	6 cut(s)	68, 350, 386, 419, 698, 863
MlyI	GAGTC	4 cut(s)	37, 530, 626, 758
MnlI	CCTC	5 cut(s)	52, 88, 426, 646, 765
MseI	TTAA	6 cut(s)	6, 162, 189, 543, 677, 689
MslI	CAYNNNNRTG	1 cut(s)	666
MspR9I	CCNGG	1 cut(s)	194
MunI	CAATTG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	194
NdeI	CATATG	1 cut(s)	315
NdeII	GATC	5 cut(s)	136, 264, 301, 509, 877
NlaIII	CATG	5 cut(s)	385, 451, 653, 671, 686
NlaIV	GGNNCC	2 cut(s)	108, 378
NmuCI	GTSAC	1 cut(s)	474
PctI	GAATGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	815
PkrI	GCNGC	2 cut(s)	432, 453
PleI	GAGTC	4 cut(s)	37, 530, 625, 757
PpsI	GAGTC	4 cut(s)	37, 530, 625, 757
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	108, 378
PstNI	CAGNNNCTG	2 cut(s)	232, 539
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	3 cut(s)	442, 776, 795
RsaNI	GTAC	3 cut(s)	441, 775, 794
RseI	CAYNNNNRTG	1 cut(s)	666
SalI	GTCGAC	1 cut(s)	40
SaqAI	TTAA	6 cut(s)	6, 162, 189, 543, 677, 689
SatI	GCNGC	2 cut(s)	431, 452
Sau3AI	GATC	5 cut(s)	136, 264, 301, 509, 877
ScaI	AGTACT	1 cut(s)	442
SchI	GAGTC	4 cut(s)	37, 530, 626, 758
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	582
SfaNI	GCATC	2 cut(s)	19, 448
SmiMI	CAYNNNNRTG	1 cut(s)	666
Sse9I	AATT	6 cut(s)	68, 350, 386, 419, 698, 863
SsiI	CCGC	1 cut(s)	841
SspMI	CTAG	2 cut(s)	47, 522
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	744
TaqI	TCGA	3 cut(s)	41, 512, 849
TasI	AATT	6 cut(s)	68, 350, 386, 419, 698, 863
TatI	WGTACW	1 cut(s)	440
TfiI	GAWTC	1 cut(s)	815
Tru1I	TTAA	6 cut(s)	6, 162, 189, 543, 677, 689
Tru9I	TTAA	6 cut(s)	6, 162, 189, 543, 677, 689
TscAI	CASTG	2 cut(s)	233, 587
TseFI	GTSAC	1 cut(s)	474
TseI	GCWGC	2 cut(s)	430, 451
Tsp45I	GTSAC	1 cut(s)	474
TspDTI	ATGAA	3 cut(s)	227, 436, 684
TspRI	CASTG	2 cut(s)	233, 587
VneI	GTGCAC	1 cut(s)	578
XagI	CCTNNNNNAGG	1 cut(s)	720
XmiI	GTMKAC	1 cut(s)	41
XspI	CTAG	2 cut(s)	47, 522
ZrmI	AGTACT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.