Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009839

Physical Location & Seq

Genomic Coordinates Forward (+)

16123741 .. 16125601

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTCCTGCCCAACCATTCATGGAGGCTGACCAAGACTGTAAACCATTTGTCAACCCAAAAGTTGAACTTGTTGATGATGATACAGAAATCAGGAGGGCTTCCTTGCCAAACTCTGCTTCTGCTTCGGCATCGGAGGGAAAACACATGGCTTCCATCTTCGACATTGATATAATTCAGTGCACAAGTAATCAGGAGCAGCCTGAAACTGACCATCCTGATGCAGATGCAACTGATGAATATTCAACCTCATTTGCCGACACTACGTCTGACACTGGTAGTTTTTCTGGATTTTGTGAAGAAGGTGAAGTGCAGTCCCATTCATTTGGGGACAATACTTTGACATCTGCTTTTGATGCATTTGCGAGTGCATTTCAAACCAGGAAGAAGAAGTTGACAAATCACTGGAGAAACTTTATACGTCCTGTAATGTGGCGCTGCAATTGGATGGAATTGAGAATTAAGGAAATTGAAGCACAAGCACTAAAGTATTCCAGAGAACTAGGAGTAGCATATGGTAAAGAAAGACATACAGGACTCGACCAATTTCCTTTGGAAGAATTTGGTTCAAAGTCATTGCCATGTTGTAGTCAATTCCGCAGAAAGAAGGCTATGAAGAGGAGGAAACGCAAAAGAGTTGAAGACACAAGTGATATAGCATCATATATCTCAAATCATAATGTCTTTTCCTATCTTGAAAATAAAAGATCCGATCATGATGGCACTTCCGTTGCTGATGACTTTAGTAATGCAGTAATCGCAGAGCAGAGTGCGGATTACAACGATAAACTCAGCAGTGGTGATAACTGGGCATTCTTTGAGTACCGAGATGGTGACAAGCCTTTGGAGCATGTCCTTTGGAAAATTGAGACACTGCACTCTCGGGTTCACAAGTTAAAGTATCAAATGGATGTGGTGATGTCCAAAAATGCTGCTAGGTTTTCTTCCAGCGAAAATTTGAGTGTTCTTGTACCCTGTGATGCACAGACCAGCTCTGCACATAGTCCAGCATTGTCTCCTGGCACAGACCAGCTATATATACTTCCGCTCAACATGTATCAGACTACAATGTTGGGGATCGATCGCAATACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

365

Amino Acids

41.16

Weight (kDa)

5.36

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009839)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59670
fragaria_vesca	FvH4_5g30050
malus_domestica	MD04G1049200.v1.1 MD17G1177900.v1.1
prunus_persica	Prupe.1G207400_v2.0.a1 Prupe.1G207400_v2.0.a1
pyrus_communis	pycom04g04340 pycom17g18680 pycom17g18690
rosa_chinensis	RchiOBHm_Chr7g0224241
rosa_laevigata	RLG00000001911
rosa_multiflora	Rmu_sc0008008.1_g000002 Rmu_sc0023501.1_g000004
rosa_roxburghii	Rroxscaffold_3G00235030
rosa_rugosa	Rorug07G0221600
rosa_samantha	Rh7AG366500 Rh7BG330000 Rh7BG357500 Rh7CG384800 Rh7DG360400
rosa_wichuraiana	Rw7G030990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1048
AciI	CCGC	3 cut(s)	598, 773, 1046
AclWI	GGATC	2 cut(s)	702, 1085
AcsI	RAATTY	2 cut(s)	560, 955
AfaI	GTAC	2 cut(s)	824, 972
AflIII	ACRYGT	1 cut(s)	1053
AgsI	TTSAA	7 cut(s)	68, 246, 377, 473, 570, 641, 698
AhdI	GACNNNNNGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	380, 1018
AjuI	GAANNNNNNNTTGG	2 cut(s)	103, 135
AluBI	AGCT	2 cut(s)	993, 1033
AluI	AGCT	2 cut(s)	993, 1033
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	863, 1020
Alw44I	GTGCAC	1 cut(s)	181
AlwI	GGATC	2 cut(s)	702, 1085
Ama87I	CYCGRG	1 cut(s)	882
ApaLI	GTGCAC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	199, 438, 932
ApoI	RAATTY	2 cut(s)	560, 955
AspLEI	GCGC	1 cut(s)	438
AsuHPI	GGTGA	4 cut(s)	317, 812, 845, 928
AvaI	CYCGRG	1 cut(s)	882
BaeGI	GKGCMC	1 cut(s)	185
BbsI	GAAGAC	1 cut(s)	648
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	3 cut(s)	211, 425, 919
BccI	CCATC	5 cut(s)	164, 222, 442, 713, 824
BciT130I	CCWGG	2 cut(s)	382, 1020
BcoDI	GTCTC	2 cut(s)	863, 1020
BfaI	CTAG	2 cut(s)	503, 936
BfoI	RGCGCY	1 cut(s)	439
BisI	GCNGC	3 cut(s)	200, 439, 933
BlsI	GCNGC	3 cut(s)	201, 440, 934
Bme1390I	CCNGG	2 cut(s)	382, 1020
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	882
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	382, 1020
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	6 cut(s)	140, 211, 217, 346, 668, 970
BmuI	ACTGGG	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	648
BpmI	CTGGAG	1 cut(s)	427
Bsa29I	ATCGAT	1 cut(s)	1080
Bse1I	ACTGG	3 cut(s)	280, 410, 812
Bse3DI	GCAATG	1 cut(s)	575
BseBI	CCWGG	2 cut(s)	382, 1020
BseCI	ATCGAT	1 cut(s)	1080
BseGI	GGATG	3 cut(s)	214, 453, 916
BseMI	GCAATG	1 cut(s)	575
BseMII	CTCAG	1 cut(s)	805
BseNI	ACTGG	3 cut(s)	280, 410, 812
BseRI	GAGGAG	1 cut(s)	634
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	3 cut(s)	211, 425, 919
BsgI	GTGCAG	3 cut(s)	332, 860, 981
Bsh1285I	CGRYCG	1 cut(s)	1084
BshVI	ATCGAT	1 cut(s)	1080
BsiEI	CGRYCG	1 cut(s)	1084
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	882
BslFI	GGGAC	2 cut(s)	301, 344
BsmAI	GTCTC	2 cut(s)	863, 1020
BsmFI	GGGAC	2 cut(s)	301, 344
BsmI	GAATGC	1 cut(s)	812
BsoBI	CYCGRG	1 cut(s)	882
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp143I	GATC	4 cut(s)	707, 712, 1077, 1081
BspACI	CCGC	3 cut(s)	598, 773, 1046
BspCNI	CTCAG	1 cut(s)	804
BspDI	ATCGAT	1 cut(s)	1080
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	702, 1085
BsrBI	CCGCTC	1 cut(s)	1048
BsrDI	GCAATG	1 cut(s)	575
BsrI	ACTGG	3 cut(s)	280, 410, 812
BssMI	GATC	4 cut(s)	707, 712, 1077, 1081
Bst2UI	CCWGG	2 cut(s)	382, 1020
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	611
BstDEI	CTNAG	1 cut(s)	791
BstF5I	GGATG	3 cut(s)	214, 453, 916
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	1 cut(s)	438
BstKTI	GATC	4 cut(s)	710, 715, 1080, 1084
BstMAI	GTCTC	2 cut(s)	863, 1020
BstMBI	GATC	4 cut(s)	707, 712, 1077, 1081
BstMCI	CGRYCG	1 cut(s)	1084
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 758, 847
BstNI	CCWGG	2 cut(s)	382, 1020
BstNSI	RCATGY	2 cut(s)	854, 1057
BstSCI	CCNGG	2 cut(s)	380, 1018
BstSLI	GKGCMC	1 cut(s)	185
BstV1I	GCAGC	3 cut(s)	211, 425, 919
BstV2I	GAAGAC	1 cut(s)	648
BstX2I	RGATCY	1 cut(s)	707
BstXI	CCANNNNNNTGG	1 cut(s)	326
BstYI	RGATCY	1 cut(s)	707
Bsu15I	ATCGAT	1 cut(s)	1080
BsuTUI	ATCGAT	1 cut(s)	1080
BtsCI	GGATG	3 cut(s)	214, 453, 916
BtsI	GCAGTG	2 cut(s)	802, 872
BtsIMutI	CAGTG	5 cut(s)	185, 273, 403, 802, 872
CciI	TCATGA	1 cut(s)	715
CfoI	GCGC	1 cut(s)	438
ClaI	ATCGAT	1 cut(s)	1080
Csp6I	GTAC	2 cut(s)	823, 971
CviAII	CATG	6 cut(s)	22, 148, 582, 716, 851, 1054
CviJI	RGCY	9 cut(s)	5, 29, 101, 152, 202, 611, 841, 993, 1033
CviKI_1	RGCY	9 cut(s)	5, 29, 101, 152, 202, 611, 841, 993, 1033
CviQI	GTAC	2 cut(s)	823, 971
DdeI	CTNAG	1 cut(s)	791
DpnI	GATC	4 cut(s)	709, 714, 1079, 1083
DpnII	GATC	4 cut(s)	707, 712, 1077, 1081
DriI	GACNNNNNGTC	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	611
Eam1105I	GACNNNNNGTC	1 cut(s)	265
EarI	CTCTTC	1 cut(s)	611
Eco88I	CYCGRG	1 cut(s)	882
EcoRII	CCWGG	2 cut(s)	380, 1018
EcoT22I	ATGCAT	1 cut(s)	361
FaeI	CATG	6 cut(s)	25, 151, 585, 719, 854, 1057
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	2 cut(s)	301, 344
FatI	CATG	6 cut(s)	21, 147, 581, 715, 850, 1053
FauNDI	CATATG	1 cut(s)	514
Fnu4HI	GCNGC	3 cut(s)	200, 439, 933
FokI	GGATG	3 cut(s)	201, 460, 923
Fsp4HI	GCNGC	3 cut(s)	200, 439, 933
FspBI	CTAG	2 cut(s)	503, 936
GlaI	GCGC	1 cut(s)	437
GluI	GCNGC	3 cut(s)	200, 439, 933
GsuI	CTGGAG	1 cut(s)	427
HaeII	RGCGCY	1 cut(s)	439
HhaI	GCGC	1 cut(s)	438
Hin1II	CATG	6 cut(s)	25, 151, 585, 719, 854, 1057
Hin6I	GCGC	1 cut(s)	436
HinP1I	GCGC	1 cut(s)	436
HincII	GTYRAC	2 cut(s)	55, 396
HindII	GTYRAC	2 cut(s)	55, 396
HinfI	GANTC	1 cut(s)	537
HphI	GGTGA	4 cut(s)	317, 812, 845, 928
Hpy166II	GTNNAC	5 cut(s)	44, 55, 183, 396, 889
Hpy188I	TCNGA	4 cut(s)	136, 271, 712, 1062
Hpy188III	TCNNGA	7 cut(s)	94, 194, 218, 288, 495, 695, 716
Hpy8I	GTNNAC	5 cut(s)	44, 55, 183, 396, 889
HpyAV	CCTTC	2 cut(s)	296, 601
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	2 cut(s)	266, 421
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 758, 847
HpyF3I	CTNAG	1 cut(s)	791
HpySE526I	ACGT	2 cut(s)	266, 421
Hsp92II	CATG	6 cut(s)	25, 151, 585, 719, 854, 1057
HspAI	GCGC	1 cut(s)	436
Kzo9I	GATC	4 cut(s)	707, 712, 1077, 1081
LmnI	GCTCC	3 cut(s)	10, 196, 847
Lsp1109I	GCAGC	3 cut(s)	211, 425, 919
LweI	GCATC	6 cut(s)	140, 211, 217, 346, 668, 970
MaeI	CTAG	2 cut(s)	503, 936
MaeII	ACGT	2 cut(s)	266, 421
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	4 cut(s)	709, 714, 1079, 1083
MbiI	CCGCTC	1 cut(s)	1048
MboI	GATC	4 cut(s)	707, 712, 1077, 1081
MboII	GAAGA	8 cut(s)	151, 311, 397, 400, 569, 628, 653, 936
MfeI	CAATTG	1 cut(s)	442
MflI	RGATCY	1 cut(s)	707
MhlI	GDGCHC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	531
MnlI	CCTC	6 cut(s)	19, 90, 130, 259, 612, 615
Mph1103I	ATGCAT	1 cut(s)	361
MseI	TTAA	2 cut(s)	462, 896
MslI	CAYNNNNRTG	2 cut(s)	219, 580
MspR9I	CCNGG	2 cut(s)	382, 1020
MunI	CAATTG	1 cut(s)	442
Mva1269I	GAATGC	1 cut(s)	812
MvaI	CCWGG	2 cut(s)	382, 1020
MwoI	GCNNNNNNNGC	3 cut(s)	356, 758, 847
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	4 cut(s)	707, 712, 1077, 1081
NlaIII	CATG	6 cut(s)	25, 151, 585, 719, 854, 1057
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	833
NsiI	ATGCAT	1 cut(s)	361
NspI	RCATGY	2 cut(s)	854, 1057
PagI	TCATGA	1 cut(s)	715
PciI	ACATGT	1 cut(s)	1053
PctI	GAATGC	1 cut(s)	812
PkrI	GCNGC	3 cut(s)	201, 440, 934
Ple19I	CGATCG	1 cut(s)	1084
PleI	GAGTC	1 cut(s)	531
PpsI	GAGTC	1 cut(s)	531
PscI	ACATGT	1 cut(s)	1053
Psp6I	CCWGG	2 cut(s)	380, 1018
PspGI	CCWGG	2 cut(s)	380, 1018
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	707
PvuI	CGATCG	1 cut(s)	1084
RsaI	GTAC	2 cut(s)	824, 972
RsaNI	GTAC	2 cut(s)	823, 971
RseI	CAYNNNNRTG	2 cut(s)	219, 580
SaqAI	TTAA	2 cut(s)	462, 896
SatI	GCNGC	3 cut(s)	200, 439, 933
Sau3AI	GATC	4 cut(s)	707, 712, 1077, 1081
SchI	GAGTC	1 cut(s)	531
ScrFI	CCNGG	2 cut(s)	382, 1020
SduI	GDGCHC	1 cut(s)	185
SetI	ASST	8 cut(s)	251, 269, 307, 424, 941, 995, 1035, 1094
SfaNI	GCATC	6 cut(s)	140, 211, 217, 346, 668, 970
SmiMI	CAYNNNNRTG	2 cut(s)	219, 580
SsiI	CCGC	3 cut(s)	598, 773, 1046
SspI	AATATT	1 cut(s)	242
SspMI	CTAG	2 cut(s)	503, 936
StyD4I	CCNGG	2 cut(s)	380, 1018
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	2 cut(s)	269, 424
TaqI	TCGA	3 cut(s)	162, 540, 1080
Tru1I	TTAA	2 cut(s)	462, 896
Tru9I	TTAA	2 cut(s)	462, 896
TscAI	CASTG	5 cut(s)	185, 280, 410, 802, 879
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	3 cut(s)	199, 438, 932
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	4 cut(s)	10, 252, 312, 629
TspGWI	ACGGA	1 cut(s)	718
TspRI	CASTG	5 cut(s)	185, 280, 410, 802, 879
VneI	GTGCAC	1 cut(s)	181
XapI	RAATTY	2 cut(s)	560, 955
XceI	RCATGY	2 cut(s)	854, 1057
XspI	CTAG	2 cut(s)	503, 936
Zsp2I	ATGCAT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.