pycom17g18690

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
16126207 .. 16126455
249 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGATCAACAACCAACCTAAAGAGGAACATGAGCAACCAGAGAAAGACATGCATGAAGCCGTTTTTCCAACTCCACAATCAGACCCTGCTCCCTCGGCAGAAGCTGCTCTTCCTCAGGAGCAATCAACTCTAGAGTCATGCTTGGCTTCAGATGTAAGTTTTCCTAGAAACAAGAGAAAGCGAGGGCAGCGGAAAGCAGGTTCGGTTGTTTGGAGCAAGAAATGCTCGGGCGAGCCTGATAGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.09

Weight (kDa)

5.63

Isoelectric Point (pI)

86.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 188
AciI CCGC 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 132
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 1 cut(s) 104
AluI AGCT 1 cut(s) 104
AlwNI CAGNNNCTG 2 cut(s) 86, 104
Ama87I CYCGRG 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 104, 187
AvaI CYCGRG 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 114
BbvI GCAGC 2 cut(s) 91, 199
BceAI ACGGC 1 cut(s) 44
BclI TGATCA 1 cut(s) 3
BfaI CTAG 2 cut(s) 131, 165
BfuAI ACCTGC 1 cut(s) 188
BisI GCNGC 2 cut(s) 105, 188
BlsI GCNGC 2 cut(s) 106, 189
BmeT110I CYCGRG 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 244
Bse21I CCTNAGG 1 cut(s) 114
BseDI CCNNGG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 91, 199
BsiHKCI CYCGRG 1 cut(s) 226
BsoBI CYCGRG 1 cut(s) 226
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 190
BspCNI CTCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 188
BspQI GCTCTTC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 3
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 2 cut(s) 104, 222
BstC8I GCNNGC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 4 cut(s) 95, 104, 187, 222
BstNSI RCATGY 1 cut(s) 52
BstV1I GCAGC 2 cut(s) 91, 199
Bsu36I CCTNAGG 1 cut(s) 114
BveI ACCTGC 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 233
CaiI CAGNNNCTG 2 cut(s) 86, 104
CviAII CATG 4 cut(s) 29, 49, 53, 138
CviJI RGCY 5 cut(s) 59, 104, 146, 235, 243
CviKI_1 RGCY 5 cut(s) 59, 104, 146, 235, 243
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 54
FaeI CATG 4 cut(s) 32, 52, 56, 141
FaiI YATR 4 cut(s) 30, 50, 54, 139
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 4 cut(s) 28, 48, 52, 137
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 2 cut(s) 105, 188
Fsp4HI GCNGC 2 cut(s) 105, 188
FspBI CTAG 2 cut(s) 131, 165
GluI GCNGC 2 cut(s) 105, 188
Hin1II CATG 4 cut(s) 32, 52, 56, 141
HinfI GANTC 1 cut(s) 134
Hpy188I TCNGA 2 cut(s) 82, 151
Hpy188III TCNNGA 2 cut(s) 116, 131
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 104, 187, 222
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 4 cut(s) 32, 52, 56, 141
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LguI GCTCTTC 1 cut(s) 114
LmnI GCTCC 3 cut(s) 94, 118, 213
LpnPI CCDG 4 cut(s) 51, 99, 101, 183
Lsp1109I GCAGC 2 cut(s) 91, 199
MaeI CTAG 2 cut(s) 131, 165
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 101
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 4 cut(s) 16, 103, 123, 176
Mph1103I ATGCAT 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 190
MwoI GCNNNNNNNGC 4 cut(s) 95, 104, 187, 222
NdeII GATC 1 cut(s) 3
NlaIII CATG 4 cut(s) 32, 52, 56, 141
NmeAIII GCCGAG 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 114
PkrI GCNGC 2 cut(s) 106, 189
PleI GAGTC 1 cut(s) 142
PpsI GAGTC 1 cut(s) 142
PstNI CAGNNNCTG 2 cut(s) 86, 104
SapI GCTCTTC 1 cut(s) 114
SatI GCNGC 2 cut(s) 105, 188
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 1 cut(s) 143
SetI ASST 3 cut(s) 19, 106, 202
SsiI CCGC 1 cut(s) 190
SspMI CTAG 2 cut(s) 131, 165
TseI GCWGC 2 cut(s) 104, 187
TspDTI ATGAA 1 cut(s) 69
XbaI TCTAGA 1 cut(s) 130
XceI RCATGY 1 cut(s) 52
XspI CTAG 2 cut(s) 131, 165
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.