pycom17g20840

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0011748
Physical Location & Seq
Forward (+)
19273567 .. 19275760
2194 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGCATTATTTCTCACTGGTACACGGCCCTCTATTTATTCCCTTTTTCTGTGGCCTAAACTTGTATATAAGCACACTCCCTGCATGGCTCATTACTTCACCATTCCATACTTTGCCTCCAAAATATCCGATAGTGAATAACATTGTATTTTTCTTGAGAGCATACCAAAAGATGAGCCGACCAGGAGACTGGAACTGCAGGTCATGCCAGCACCTCAACTTCCAGAGGCGTGACTCATGCCAACGTTGTGGAGATGCCAAGTCCGGCGTAGACTTCGGGGGCTTCGGCGAAAGAGGAGGAGGATCCTCGTTTGGGTTCATGACTACCGGCTCAGATGTTCGGCCTGGTGACTGGTACTGCGCTGCGGGCAACTGTGGAGCCCACAATTTTGCAAGCCGTTCCAGCTGCTTCAAATGTGGGGCTTTCAAGGATGATTCTGGCATTAGCGGCGGCGGTGGCTTTGACTCTGACCTGCCACGCTCCCGGGGTTTCGGGTTAGGACTTGGCGGTGGTGGTGGAGGAGGCGGAGGAGGCGGAGTAGGCGGAGCAGGTGGTGGTCGACCTGGATGGAAATCTGGAGATTGGATTTGTACCAGGTTGGGGTGCAACGAGCACAACTTTGCTAGCAGAATGGAATGCTTTAGATGCAATGCCCCAAGAGACTCGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RanBP

Protein Analysis

224

Amino Acids

23.77

Weight (kDa)

8.83

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_RanBP PF00641 191 - 220 8.4e-08 Zn-finger in Ran binding protein and others
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011748)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G15680 AT3G15680
fragaria_vesca FvH4_6g30320 FvH4_6g30320 FvH4_6g30320 FvH4_6g30320
malus_domestica MD09G1220800.v1.1 MD17G1204500.v1.1
prunus_persica Prupe.3G080000_v2.0.a1
pyrus_communis pycom1094g00130 pycom17g20840
rosa_chinensis RchiOBHm_Chr2g0136561
rosa_laevigata RLG00000019541
rosa_multiflora Rmu_sc0006440.1_g000002 Rmu_sc0006440.1_g000003
rosa_roxburghii Rroxscaffold_2G00108170
rosa_rugosa Rorug02G0332000
rosa_samantha Rh2AG382800
rosa_wichuraiana Rw2G031290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 539
Acc36I ACCTGC 3 cut(s) 189, 480, 539
AccI GTMKAC 2 cut(s) 270, 559
AciI CCGC 8 cut(s) 365, 447, 450, 453, 507, 525, 534, 543
AclI AACGTT 1 cut(s) 244
AclWI GGATC 2 cut(s) 297, 310
AfaI GTAC 4 cut(s) 21, 356, 592, 668
AfiI CCNNNNNNNGG 2 cut(s) 312, 600
AgsI TTSAA 2 cut(s) 412, 427
AjnI CCWGG 4 cut(s) 181, 343, 562, 593
AluBI AGCT 1 cut(s) 405
AluI AGCT 1 cut(s) 405
Alw21I GWGCWC 1 cut(s) 615
Alw26I GTCTC 2 cut(s) 180, 654
AlwI GGATC 2 cut(s) 297, 310
Ama87I CYCGRG 1 cut(s) 483
AoxI GGCC 3 cut(s) 25, 52, 341
ApeKI GCWGC 2 cut(s) 362, 405
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 1 cut(s) 26
AsuC2I CCSGG 2 cut(s) 484, 485
AsuHPI GGTGA 2 cut(s) 90, 359
AsuNHI GCTAGC 1 cut(s) 623
AvaI CYCGRG 1 cut(s) 483
BamHI GGATCC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 349, 392
BccI CCATC 1 cut(s) 561
BceAI ACGGC 2 cut(s) 40, 381
BciT130I CCWGG 4 cut(s) 183, 345, 564, 595
BcnI CCSGG 2 cut(s) 484, 485
BcoDI GTCTC 2 cut(s) 180, 654
BfaI CTAG 2 cut(s) 624, 670
BfmI CTRYAG 1 cut(s) 196
BfuAI ACCTGC 3 cut(s) 189, 480, 539
BisI GCNGC 4 cut(s) 363, 406, 448, 451
BlsI GCNGC 4 cut(s) 364, 407, 449, 452
Bme1390I CCNGG 6 cut(s) 183, 345, 484, 485, 564, 595
BmeT110I CYCGRG 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 304, 379
BmrFI CCNGG 6 cut(s) 183, 345, 484, 485, 564, 595
BmsI GCATC 2 cut(s) 244, 635
BmtI GCTAGC 1 cut(s) 627
BpmI CTGGAG 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 175
BpuMI CCSGG 2 cut(s) 484, 485
BsaBI GATNNNNATC 1 cut(s) 571
BsaJI CCNNGG 2 cut(s) 483, 484
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 522, 552
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 600
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 3 cut(s) 21, 194, 356
Bse3DI GCAATG 1 cut(s) 655
Bse8I GATNNNNATC 1 cut(s) 571
BseBI CCWGG 4 cut(s) 183, 345, 564, 595
BseDI CCNNGG 2 cut(s) 483, 484
BseGI GGATG 2 cut(s) 436, 572
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 312, 600
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 1 cut(s) 345
BseNI ACTGG 3 cut(s) 21, 194, 356
BseRI GAGGAG 4 cut(s) 309, 312, 534, 543
BseXI GCAGC 2 cut(s) 349, 392
BshFI GGCC 3 cut(s) 27, 54, 343
BsiHKAI GWGCWC 1 cut(s) 615
BsiHKCI CYCGRG 1 cut(s) 483
BsiSI CCGG 3 cut(s) 264, 327, 484
BslI CCNNNNNNNGG 2 cut(s) 312, 600
BsmAI GTCTC 2 cut(s) 180, 654
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 3 cut(s) 27, 54, 343
BsoBI CYCGRG 1 cut(s) 483
Bsp1286I GDGCHC 2 cut(s) 382, 615
Bsp143I GATC 1 cut(s) 302
BspACI CCGC 8 cut(s) 365, 447, 450, 453, 507, 525, 534, 543
BspANI GGCC 3 cut(s) 27, 54, 343
BspCNI CTCAG 1 cut(s) 344
BspHI TCATGA 1 cut(s) 318
BspLI GGNNCC 2 cut(s) 304, 379
BspMAI CTGCAG 1 cut(s) 200
BspMI ACCTGC 3 cut(s) 189, 480, 539
BspOI GCTAGC 1 cut(s) 627
BspPI GGATC 2 cut(s) 297, 310
BsrDI GCAATG 1 cut(s) 655
BsrFI RCCGGY 1 cut(s) 326
BsrI ACTGG 3 cut(s) 21, 194, 356
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 483, 484
BssMI GATC 1 cut(s) 302
Bst2UI CCWGG 4 cut(s) 183, 345, 564, 595
Bst4CI ACNGT 1 cut(s) 374
BstAPI GCANNNNNTGC 1 cut(s) 204
BstC8I GCNNGC 4 cut(s) 209, 367, 394, 625
BstDEI CTNAG 1 cut(s) 331
BstF5I GGATG 2 cut(s) 436, 572
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 2 cut(s) 180, 654
BstMBI GATC 1 cut(s) 302
BstMWI GCNNNNNNNGC 8 cut(s) 204, 366, 402, 447, 456, 531, 540, 645
BstNI CCWGG 4 cut(s) 183, 345, 564, 595
BstSCI CCNGG 6 cut(s) 181, 343, 482, 483, 562, 593
BstSFI CTRYAG 1 cut(s) 196
BstV1I GCAGC 2 cut(s) 349, 392
BstX2I RGATCY 1 cut(s) 302
BstXI CCANNNNNNTGG 2 cut(s) 189, 248
BstYI RGATCY 1 cut(s) 302
BsuRI GGCC 3 cut(s) 27, 54, 343
BtsCI GGATG 2 cut(s) 436, 572
BtsIMutI CAGTG 1 cut(s) 14
BveI ACCTGC 3 cut(s) 189, 480, 539
Cac8I GCNNGC 4 cut(s) 209, 367, 394, 625
CciI TCATGA 1 cut(s) 318
CfoI GCGC 1 cut(s) 362
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 26
Cfr9I CCCGGG 1 cut(s) 483
CsiI ACCWGGT 1 cut(s) 593
Csp6I GTAC 4 cut(s) 20, 355, 591, 667
CviAII CATG 4 cut(s) 84, 204, 237, 319
CviQI GTAC 4 cut(s) 20, 355, 591, 667
DdeI CTNAG 1 cut(s) 331
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
EciI GGCGGA 3 cut(s) 540, 549, 558
Eco24I GRGCYC 1 cut(s) 382
Eco88I CYCGRG 1 cut(s) 483
EcoRII CCWGG 4 cut(s) 181, 343, 562, 593
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 382
FaeI CATG 4 cut(s) 87, 207, 240, 322
FaiI YATR 8 cut(s) 66, 68, 85, 108, 163, 205, 238, 320
FatI CATG 4 cut(s) 83, 203, 236, 318
FauI CCCGC 1 cut(s) 358
FblI GTMKAC 2 cut(s) 270, 559
Fnu4HI GCNGC 4 cut(s) 363, 406, 448, 451
FokI GGATG 2 cut(s) 443, 579
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 4 cut(s) 363, 406, 448, 451
FspBI CTAG 2 cut(s) 624, 670
GlaI GCGC 1 cut(s) 361
GluI GCNGC 4 cut(s) 363, 406, 448, 451
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 3 cut(s) 27, 54, 343
HapII CCGG 3 cut(s) 264, 327, 484
HhaI GCGC 1 cut(s) 362
Hin1II CATG 4 cut(s) 87, 207, 240, 322
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HincII GTYRAC 1 cut(s) 560
HindII GTYRAC 1 cut(s) 560
HinfI GANTC 4 cut(s) 233, 434, 464, 662
HpaII CCGG 3 cut(s) 264, 327, 484
HphI GGTGA 2 cut(s) 90, 359
Hpy166II GTNNAC 3 cut(s) 22, 271, 560
Hpy188I TCNGA 3 cut(s) 129, 334, 469
Hpy188III TCNNGA 4 cut(s) 154, 223, 319, 576
Hpy8I GTNNAC 3 cut(s) 22, 271, 560
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 6 cut(s) 4, 83, 198, 392, 606, 648
HpyF10VI GCNNNNNNNGC 8 cut(s) 204, 366, 402, 447, 456, 531, 540, 645
HpyF3I CTNAG 1 cut(s) 331
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 4 cut(s) 87, 207, 240, 322
HspAI GCGC 1 cut(s) 360
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 3 cut(s) 377, 485, 545
Lsp1109I GCAGC 2 cut(s) 349, 392
LweI GCATC 2 cut(s) 244, 635
MabI ACCWGGT 1 cut(s) 593
MaeI CTAG 2 cut(s) 624, 670
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 2 cut(s) 230, 347
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 2 cut(s) 382, 615
MluCI AATT 1 cut(s) 385
MlyI GAGTC 3 cut(s) 227, 458, 656
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 3 cut(s) 264, 327, 484
MspR9I CCNGG 6 cut(s) 183, 345, 484, 485, 564, 595
Mva1269I GAATGC 1 cut(s) 641
MvaI CCWGG 4 cut(s) 183, 345, 564, 595
MwoI GCNNNNNNNGC 8 cut(s) 204, 366, 402, 447, 456, 531, 540, 645
NciI CCSGG 2 cut(s) 484, 485
NdeII GATC 1 cut(s) 302
NheI GCTAGC 1 cut(s) 623
NlaIII CATG 4 cut(s) 87, 207, 240, 322
NlaIV GGNNCC 2 cut(s) 304, 379
NmuCI GTSAC 2 cut(s) 230, 347
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 318
PaqCI CACCTGC 1 cut(s) 539
PctI GAATGC 1 cut(s) 641
PfeI GAWTC 1 cut(s) 434
PkrI GCNGC 4 cut(s) 364, 407, 449, 452
PleI GAGTC 3 cut(s) 227, 458, 656
PpsI GAGTC 3 cut(s) 227, 458, 656
Psp1406I AACGTT 1 cut(s) 244
Psp6I CCWGG 4 cut(s) 181, 343, 562, 593
PspGI CCWGG 4 cut(s) 181, 343, 562, 593
PspN4I GGNNCC 2 cut(s) 304, 379
PspPI GGNCC 1 cut(s) 26
PstI CTGCAG 1 cut(s) 200
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 405
RsaI GTAC 4 cut(s) 21, 356, 592, 668
RsaNI GTAC 4 cut(s) 20, 355, 591, 667
SalI GTCGAC 1 cut(s) 558
SatI GCNGC 4 cut(s) 363, 406, 448, 451
Sau3AI GATC 1 cut(s) 302
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 3 cut(s) 227, 458, 656
ScrFI CCNGG 6 cut(s) 183, 345, 484, 485, 564, 595
SduI GDGCHC 2 cut(s) 382, 615
SetI ASST 8 cut(s) 203, 216, 247, 407, 474, 553, 565, 599
SexAI ACCWGGT 1 cut(s) 593
SfaNI GCATC 2 cut(s) 244, 635
SfcI CTRYAG 1 cut(s) 196
SmaI CCCGGG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 385
SsiI CCGC 8 cut(s) 365, 447, 450, 453, 507, 525, 534, 543
SspMI CTAG 2 cut(s) 624, 670
StyD4I CCNGG 6 cut(s) 181, 343, 482, 483, 562, 593
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 247
TaqI TCGA 1 cut(s) 559
TasI AATT 1 cut(s) 385
TauI GCSGC 2 cut(s) 450, 453
TfiI GAWTC 1 cut(s) 434
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 2 cut(s) 230, 347
TseI GCWGC 2 cut(s) 362, 405
Tsp45I GTSAC 2 cut(s) 230, 347
TspDTI ATGAA 1 cut(s) 307
TspMI CCCGGG 1 cut(s) 483
TspRI CASTG 1 cut(s) 21
XmaI CCCGGG 1 cut(s) 483
XmiI GTMKAC 2 cut(s) 270, 559
XspI CTAG 2 cut(s) 624, 670
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.