Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0012529

Physical Location & Seq

Genomic Coordinates Forward (+)

20463558 .. 20465670

Gene Structure 2113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGCTCCCATTCTCTTCCGCACAAACCAAACCCTCACCTCACACTCCAAATCTCTACCCTTCTTCCCACTCAATCTCTCACTCTCTCCCCTCACCTCCTTCCACTCTCAAACTCCCCAAAACCCACACCCAGCTCCATCCCCATCGCCTCCGAATCCGAGCCATCGATGCAGCTCAGCCCTTCGACTACGAAACCCGGATCAAAACCCATTACCACAAATCCAACGCTCTCAAAATCGCCATCCTTGGCTTCGGAAACTTCGGTCAGTTCCTTGCCAAAGCCTTCGTCGGGCAAGGCCACACAGTCCTCGCACAATCTCGCTCCGACTACACCAAAGCCGCACAAAGCCTCGGGGTTTTGTTCTACACCGACCCGAATGATCTCTGCGAGCAACACCCAGAAGTTGTTATCTTGTGCACTTCGATTTTGTCCTCCGAAAAGGTAATCAGATCGTTCCCATTCCAGAGGCTTAAAAGAAACACTCTTTTTGTTGATGTTCTTTCGGTCAAGGAATTTCCGAGGGATTTGTTGTTGAAGTACTTGCCTGTTGAATTTGATATTCTGTGCACCCACCCAATGTTTGGACCAGAGAGTGGGAAGAACTCGTGGGCTAATCTTCCTTTTGTGTATGATAAAGTTCGGATTGGGAATAATGGCTTTAGGCTCAATAGGTGTGAGAAATTTCTAGGCATTTTTGCTAAGGAGGGGTGTAGGATGGTTGAAATGTCATGTGCCGAACATGATAGGCATGCGGCAGGGTCGCAATTTGTGACACATACAATGGGGAGGGTGTTGGAGAGGTTTAATTTGGAGTCTTCACCAATTAATACAAAAGGGTACGAGACATTGTTGAATTTGGTGGAGAATACATCCGGGGATAGCTTTGATTTGTATTACGGGTTGTTTATGTATAACAAGAATGCAATGGAGCAGTTGGAGAGATTGGACAATGCGTTTGAGGCTCTGAAGCAAGAGTTGTTTGGGAATTTGCACGAGGTTTGTAGGAAGCAGTTGTTTGGGACTGTAGAAGCAGCAGAAGCTCCAACAGAAGAGCCTGCCCAGCCGCAGAAATTGCTTATGGTTGGTACTCAAAACGGGCACGATGAGACTCCTAAGAAAGGTCACGAAAATGGAACGGAGCAGCTGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006570 GO:0006571 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0008977 GO:0009058 GO:0009072 GO:0009073 GO:0009095 GO:0009507 GO:0009536 GO:0009987 GO:0016053 GO:0016491 GO:0016627 GO:0016628 GO:0019438 GO:0019752 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048037 GO:0050662 GO:0051287 GO:0055114 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00190 ko00400 ko01100 ko01110 ko01130 ko01230 map00190 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

PDH

Protein Analysis

384

Amino Acids

43.26

Weight (kDa)

7.3

Isoelectric Point (pI)

42.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2-Hacid_dh_C	PF02826	64 - 165	7.4e-06	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
F420_oxidored	PF03807	78 - 167	5.8e-10	NADP oxidoreductase coenzyme F420-dependent
PDH_N	PF02153	99 - 199	2.3e-08	Prephenate dehydrogenase, nucleotide-binding domain
TYRAAT1_C	PF26213	264 - 337	2e-35	TYRAAT1-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0012529)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15710
malus_domestica	MD17G1215800.v1.1
prunus_persica	Prupe.3G092000_v2.0.a1 Prupe.3G127100_v2.0.a1
pyrus_communis	pycom17g22050
rosa_chinensis	RchiOBHm_Chr2g0134521
rosa_laevigata	RLG00000018999 RLG00000019399
rosa_multiflora	Rmu_co8373293.1_g000001 Rmu_sc0001334.1_g000022
rosa_roxburghii	Rroxscaffold_2G00110060 Rroxscaffold_2G00110070
rosa_rugosa	Rorug02G0318300
rosa_samantha	Rh2AG375300 Rh2BG376200 Rh2CG354400 Rh2DG393600
rosa_wichuraiana	Rw2G030180 Rw5G035370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	581, 593
AciI	CCGC	4 cut(s)	18, 339, 752, 1064
AclWI	GGATC	1 cut(s)	206
AcsI	RAATTY	5 cut(s)	512, 551, 680, 853, 985
AcuI	CTGAAG	1 cut(s)	986
AfaI	GTAC	3 cut(s)	539, 839, 1087
AfiI	CCNNNNNNNGG	4 cut(s)	288, 581, 593, 1118
AgsI	TTSAA	4 cut(s)	535, 551, 722, 853
AluBI	AGCT	5 cut(s)	133, 173, 882, 1040, 1144
AluI	AGCT	5 cut(s)	133, 173, 882, 1040, 1144
Alw21I	GWGCWC	2 cut(s)	419, 569
Alw26I	GTCTC	2 cut(s)	836, 1100
Alw44I	GTGCAC	2 cut(s)	415, 565
AlwI	GGATC	1 cut(s)	206
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	1 cut(s)	295
ApaLI	GTGCAC	2 cut(s)	415, 565
ApeKI	GCWGC	4 cut(s)	170, 1031, 1141, 1144
ApoI	RAATTY	5 cut(s)	512, 551, 680, 853, 985
ArsI	GACNNNNNNTTYG	4 cut(s)	270, 302, 938, 970
AseI	ATTAAT	1 cut(s)	825
AspS9I	GGNCC	1 cut(s)	584
AsuC2I	CCSGG	2 cut(s)	196, 874
AsuHPI	GGTGA	3 cut(s)	27, 84, 810
AvaI	CYCGRG	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	584
BaeGI	GKGCMC	3 cut(s)	419, 569, 1101
BauI	CACGAG	2 cut(s)	604, 992
BbsI	GAAGAC	1 cut(s)	807
Bbv12I	GWGCWC	2 cut(s)	419, 569
BbvI	GCAGC	3 cut(s)	182, 1043, 1131
BccI	CCATC	5 cut(s)	144, 150, 170, 248, 709
BcnI	CCSGG	2 cut(s)	196, 874
BcoDI	GTCTC	2 cut(s)	836, 1100
BfaI	CTAG	1 cut(s)	686
BfmI	CTRYAG	1 cut(s)	1023
BisI	GCNGC	7 cut(s)	171, 339, 753, 1032, 1064, 1142, 1145
BlpI	GCTNAGC	1 cut(s)	174
BlsI	GCNGC	7 cut(s)	172, 340, 754, 1033, 1065, 1143, 1146
BmcAI	AGTACT	1 cut(s)	539
Bme1390I	CCNGG	2 cut(s)	196, 874
Bme18I	GGWCC	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	1 cut(s)	584
BmrFI	CCNGG	2 cut(s)	196, 874
BmsI	GCATC	1 cut(s)	157
BpiI	GAAGAC	1 cut(s)	807
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu1102I	GCTNAGC	1 cut(s)	174
BpuMI	CCSGG	2 cut(s)	196, 874
Bsa29I	ATCGAT	1 cut(s)	165
BsaJI	CCNNGG	4 cut(s)	244, 349, 518, 873
Bsc4I	CCNNNNNNNGG	4 cut(s)	288, 581, 593, 1118
Bse3DI	GCAATG	1 cut(s)	930
BseCI	ATCGAT	1 cut(s)	165
BseDI	CCNNGG	4 cut(s)	244, 349, 518, 873
BseGI	GGATG	4 cut(s)	136, 240, 720, 869
BseLI	CCNNNNNNNGG	4 cut(s)	288, 581, 593, 1118
BseMI	GCAATG	1 cut(s)	930
BseMII	CTCAG	1 cut(s)	188
BseSI	GKGCMC	3 cut(s)	419, 569, 1101
BseXI	GCAGC	3 cut(s)	182, 1043, 1131
BseYI	CCCAGC	2 cut(s)	129, 1059
BsgI	GTGCAG	1 cut(s)	1130
BshFI	GGCC	1 cut(s)	297
BshVI	ATCGAT	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	419, 569
BsiHKCI	CYCGRG	1 cut(s)	350
BsiSI	CCGG	2 cut(s)	196, 873
BslFI	GGGAC	1 cut(s)	1033
BslI	CCNNNNNNNGG	4 cut(s)	288, 581, 593, 1118
BsmAI	GTCTC	2 cut(s)	836, 1100
BsmFI	GGGAC	1 cut(s)	1033
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	419, 569, 1101
Bsp143I	GATC	3 cut(s)	198, 379, 449
Bsp1720I	GCTNAGC	1 cut(s)	174
BspACI	CCGC	4 cut(s)	18, 339, 752, 1064
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	187
BspDI	ATCGAT	1 cut(s)	165
BspPI	GGATC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	1044
BsrDI	GCAATG	1 cut(s)	930
BssECI	CCNNGG	4 cut(s)	244, 349, 518, 873
BssMI	GATC	3 cut(s)	198, 379, 449
BssSI	CACGAG	2 cut(s)	604, 992
BssT1I	CCWWGG	1 cut(s)	244
Bst2BI	CACGAG	2 cut(s)	604, 992
Bst4CI	ACNGT	2 cut(s)	304, 1024
Bst6I	CTCTTC	2 cut(s)	19, 1044
BstAPI	GCANNNNNTGC	1 cut(s)	1072
BstC8I	GCNNGC	3 cut(s)	389, 750, 1056
BstDEI	CTNAG	3 cut(s)	174, 699, 1113
BstENI	CCTNNNNNAGG	1 cut(s)	1116
BstF5I	GGATG	4 cut(s)	136, 240, 720, 869
BstKTI	GATC	3 cut(s)	201, 382, 452
BstMAI	GTCTC	2 cut(s)	836, 1100
BstMBI	GATC	3 cut(s)	198, 379, 449
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 959, 1037, 1060, 1072
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	194, 872
BstSFI	CTRYAG	1 cut(s)	1023
BstSLI	GKGCMC	3 cut(s)	419, 569, 1101
BstV1I	GCAGC	3 cut(s)	182, 1043, 1131
BstV2I	GAAGAC	1 cut(s)	807
Bsu15I	ATCGAT	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	297
BsuTUI	ATCGAT	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	128
BtsCI	GGATG	4 cut(s)	136, 240, 720, 869
Cac8I	GCNNGC	3 cut(s)	389, 750, 1056
Cfr13I	GGNCC	1 cut(s)	584
ClaI	ATCGAT	1 cut(s)	165
Csp6I	GTAC	3 cut(s)	538, 838, 1086
CviAII	CATG	3 cut(s)	729, 740, 749
CviQI	GTAC	3 cut(s)	538, 838, 1086
DdeI	CTNAG	3 cut(s)	174, 699, 1113
DpnI	GATC	3 cut(s)	200, 381, 451
DpnII	GATC	3 cut(s)	198, 379, 449
Eam1104I	CTCTTC	2 cut(s)	19, 1044
EarI	CTCTTC	2 cut(s)	19, 1044
Eco130I	CCWWGG	1 cut(s)	244
Eco47I	GGWCC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	986
Eco88I	CYCGRG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	1116
EcoT14I	CCWWGG	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	244
FaeI	CATG	3 cut(s)	732, 743, 752
FaiI	YATR	8 cut(s)	630, 730, 741, 750, 777, 908, 912, 1079
FaqI	GGGAC	1 cut(s)	1033
FatI	CATG	3 cut(s)	728, 739, 748
Fnu4HI	GCNGC	7 cut(s)	171, 339, 753, 1032, 1064, 1142, 1145
FokI	GGATG	4 cut(s)	123, 227, 727, 856
Fsp4HI	GCNGC	7 cut(s)	171, 339, 753, 1032, 1064, 1142, 1145
FspBI	CTAG	1 cut(s)	686
GluI	GCNGC	7 cut(s)	171, 339, 753, 1032, 1064, 1142, 1145
GsaI	CCCAGC	2 cut(s)	133, 1063
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	2 cut(s)	196, 873
Hin1II	CATG	3 cut(s)	732, 743, 752
HinfI	GANTC	3 cut(s)	153, 812, 1108
HpaII	CCGG	2 cut(s)	196, 873
HphI	GGTGA	3 cut(s)	27, 84, 810
Hpy166II	GTNNAC	2 cut(s)	417, 567
Hpy188I	TCNGA	9 cut(s)	152, 158, 254, 325, 436, 449, 519, 642, 966
Hpy188III	TCNNGA	2 cut(s)	463, 1124
Hpy8I	GTNNAC	2 cut(s)	417, 567
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	4 cut(s)	69, 108, 190, 292
HpyCH4III	ACNGT	2 cut(s)	304, 1024
HpyCH4V	TGCA	6 cut(s)	170, 417, 567, 923, 991, 1147
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 959, 1037, 1060, 1072
HpyF3I	CTNAG	3 cut(s)	174, 699, 1113
Hsp92II	CATG	3 cut(s)	732, 743, 752
Kzo9I	GATC	3 cut(s)	198, 379, 449
LguI	GCTCTTC	1 cut(s)	1044
LmnI	GCTCC	6 cut(s)	9, 138, 326, 928, 1045, 1138
Lsp1109I	GCAGC	3 cut(s)	182, 1043, 1131
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	686
MaeIII	GTNAC	2 cut(s)	769, 1121
MalI	GATC	3 cut(s)	200, 381, 451
MboI	GATC	3 cut(s)	198, 379, 449
MboII	GAAGA	6 cut(s)	6, 54, 608, 610, 807, 1061
MhlI	GDGCHC	3 cut(s)	419, 569, 1101
MluCI	AATT	9 cut(s)	512, 551, 680, 764, 805, 822, 853, 985, 1070
MlyI	GAGTC	2 cut(s)	821, 1102
MmeI	TCCRAC	5 cut(s)	246, 348, 774, 915, 1067
MseI	TTAA	3 cut(s)	471, 804, 825
MslI	CAYNNNNRTG	1 cut(s)	1128
MspA1I	CMGCKG	1 cut(s)	1144
MspI	CCGG	2 cut(s)	196, 873
MspR9I	CCNGG	2 cut(s)	196, 874
Mva1269I	GAATGC	1 cut(s)	925
MwoI	GCNNNNNNNGC	5 cut(s)	167, 959, 1037, 1060, 1072
NciI	CCSGG	2 cut(s)	196, 874
NdeII	GATC	3 cut(s)	198, 379, 449
NlaIII	CATG	3 cut(s)	732, 743, 752
NmuCI	GTSAC	2 cut(s)	769, 1121
NspI	RCATGY	1 cut(s)	752
PaeI	GCATGC	1 cut(s)	752
PciSI	GCTCTTC	1 cut(s)	1044
PctI	GAATGC	1 cut(s)	925
PfeI	GAWTC	1 cut(s)	153
PflMI	CCANNNNNTGG	2 cut(s)	581, 593
PkrI	GCNGC	7 cut(s)	172, 340, 754, 1033, 1065, 1143, 1146
PleI	GAGTC	2 cut(s)	820, 1102
PpsI	GAGTC	2 cut(s)	820, 1102
PshBI	ATTAAT	1 cut(s)	825
PspFI	CCCAGC	2 cut(s)	129, 1059
PspPI	GGNCC	1 cut(s)	584
PvuII	CAGCTG	1 cut(s)	1144
RsaI	GTAC	3 cut(s)	539, 839, 1087
RsaNI	GTAC	3 cut(s)	538, 838, 1086
RseI	CAYNNNNRTG	1 cut(s)	1128
SapI	GCTCTTC	1 cut(s)	1044
SaqAI	TTAA	3 cut(s)	471, 804, 825
SatI	GCNGC	7 cut(s)	171, 339, 753, 1032, 1064, 1142, 1145
Sau3AI	GATC	3 cut(s)	198, 379, 449
Sau96I	GGNCC	1 cut(s)	584
ScaI	AGTACT	1 cut(s)	539
SchI	GAGTC	2 cut(s)	821, 1102
ScrFI	CCNGG	2 cut(s)	196, 874
SduI	GDGCHC	3 cut(s)	419, 569, 1101
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	1023
SinI	GGWCC	1 cut(s)	584
SmiMI	CAYNNNNRTG	1 cut(s)	1128
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	9 cut(s)	512, 551, 680, 764, 805, 822, 853, 985, 1070
SsiI	CCGC	4 cut(s)	18, 339, 752, 1064
SspMI	CTAG	1 cut(s)	686
StyD4I	CCNGG	2 cut(s)	194, 872
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	2 cut(s)	304, 1024
TaqI	TCGA	3 cut(s)	165, 183, 422
TaqII	GACCGA	2 cut(s)	251, 493
TasI	AATT	9 cut(s)	512, 551, 680, 764, 805, 822, 853, 985, 1070
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	3 cut(s)	341, 755, 1066
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	3 cut(s)	471, 804, 825
Tru9I	TTAA	3 cut(s)	471, 804, 825
TseFI	GTSAC	2 cut(s)	769, 1121
TseI	GCWGC	4 cut(s)	170, 1031, 1141, 1144
Tsp45I	GTSAC	2 cut(s)	769, 1121
TspGWI	ACGGA	1 cut(s)	1151
Van91I	CCANNNNNTGG	2 cut(s)	581, 593
VneI	GTGCAC	2 cut(s)	415, 565
VpaK11BI	GGWCC	1 cut(s)	584
VspI	ATTAAT	1 cut(s)	825
XagI	CCTNNNNNAGG	1 cut(s)	1116
XapI	RAATTY	5 cut(s)	512, 551, 680, 853, 985
XceI	RCATGY	1 cut(s)	752
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XspI	CTAG	1 cut(s)	686
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.