pycom17g22540

deSI-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0012076
Physical Location & Seq
Reverse (-)
20934560 .. 20936071
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 687 bp
ATGTTGTGTAAAAAGAGTGGGTGCAGAACTGCCATTGAGGAGGAGGAGGACCGTGGATCGGTACCTGTGTACCTCAATGTCTACGATCTCACACCTTTTAATGGCTACGCTTATTGGCTTGGCCTTGGAGTTTACCATTCTGGTGTACAAGTACACGGTGTGGAGTATGCGTTCGGAGCTCATGAGTTTCCAACATCTGGAATTTTTGAAGGAGAACCGAAAAAGTGTGACGGGTTTACATTTAGGAAATCAATTTTGATCGGGAAGACGGATGTTGGGCCTTTAGAGGTGAGGGCAGTGTTGGAAGACCTTGCAGCGAATTACAGAGGCAATGCCTACAATTTGATTACCAAGAACTGCAACCACTTCTGCAATGATGCATGTATCACATTGACTGGAAATCCAATTCCAAGTTGGGTTAATCGGCTTGCCAGAATCGGGTTCCTCTGCAATTGTGTTCTTCCTGTGACTTTAAATGCGGCCAAAGTTCACAGAATCGAAGATAAGGCAGATGAAGGAGACAAGGACAAGTTAACAAATCAGTCACACAATGCGGCAAAATTGTCTAACTCTCCTTCATCTTCATCATCCTCTCCTTCTGGCACAACATTCCGCAGGGGTAGAAGCCGAACAAGACGCCCTCGTCCTCCCCCTTCGCCCTTGATTATTGCTTCTTCATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C97

Protein Analysis

229

Amino Acids

24.93

Weight (kDa)

8.76

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C97 PF05903 22 - 156 1.2e-51 PPPDE putative peptidase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012076)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G80690 AT1G80690
fragaria_vesca FvH4_6g28860
malus_domestica MD09G1223900.v1.1 MD17G1220800.v1.1
prunus_persica Prupe.3G096200_v2.0.a1
pyrus_communis pycom17g22540
rosa_chinensis RchiOBHm_Chr2g0133411
rosa_laevigata RLG00000019329
rosa_multiflora Rmu_sc0003874.1_g000005
rosa_roxburghii Rroxscaffold_2G00111190
rosa_rugosa Rorug02G0311500 Rorug02G0311600 Rorug02G0311700
rosa_samantha Rh2AG364000 Rh2BG369900 Rh2CG347300 Rh2DG386800
rosa_wichuraiana Rw2G029650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 642
Acc65I GGTACC 1 cut(s) 61
AccB1I GGYRCC 1 cut(s) 61
AccB7I CCANNNNNTGG 1 cut(s) 197
AccI GTMKAC 1 cut(s) 81
AciI CCGC 3 cut(s) 479, 554, 613
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 480
AcsI RAATTY 1 cut(s) 201
AcyI GRCGYC 1 cut(s) 637
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 4 cut(s) 63, 71, 147, 153
AfiI CCNNNNNNNGG 4 cut(s) 58, 101, 197, 438
AgsI TTSAA 1 cut(s) 209
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 1 cut(s) 513
AlwI GGATC 1 cut(s) 64
AoxI GGCC 3 cut(s) 121, 278, 480
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 201
Asp718I GGTACC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 49, 278
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 49
BaeI ACNNNNGTAYC 4 cut(s) 53, 53, 86, 86
BanI GGYRCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 2 cut(s) 272, 312
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 513
BisI GCNGC 3 cut(s) 315, 480, 555
BlsI GCNGC 3 cut(s) 316, 481, 556
Bme18I GGWCC 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 49, 278
BmiI GGNNCC 2 cut(s) 63, 443
BmsI GCATC 1 cut(s) 367
BpiI GAAGAC 2 cut(s) 272, 312
BsaHI GRCGYC 1 cut(s) 637
BsaJI CCNNGG 2 cut(s) 52, 124
BsaXI ACNNNNNCTCC 2 cut(s) 155, 185
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 101, 197, 438
Bse1I ACTGG 1 cut(s) 400
Bse3DI GCAATG 2 cut(s) 337, 379
BseDI CCNNGG 2 cut(s) 52, 124
BseGI GGATG 3 cut(s) 277, 587, 677
BseLI CCNNNNNNNGG 4 cut(s) 58, 101, 197, 438
BseMI GCAATG 2 cut(s) 337, 379
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 3 cut(s) 53, 56, 59
BseXI GCAGC 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 3 cut(s) 123, 280, 482
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 181
BslI CCNNNNNNNGG 4 cut(s) 58, 101, 197, 438
BsmAI GTCTC 1 cut(s) 513
BsnI GGCC 3 cut(s) 123, 280, 482
Bsp1286I GDGCHC 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 145
Bsp143I GATC 3 cut(s) 56, 85, 258
BspACI CCGC 3 cut(s) 479, 554, 613
BspANI GGCC 3 cut(s) 123, 280, 482
BspHI TCATGA 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 63, 443
BspPI GGATC 1 cut(s) 64
BspT107I GGYRCC 1 cut(s) 61
BsrDI GCAATG 2 cut(s) 337, 379
BsrGI TGTACA 1 cut(s) 145
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 52, 124
BssMI GATC 3 cut(s) 56, 85, 258
BssNI GRCGYC 1 cut(s) 637
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 2 cut(s) 53, 158
BstACI GRCGYC 1 cut(s) 637
BstAUI TGTACA 1 cut(s) 145
BstC8I GCNNGC 1 cut(s) 429
BstDSI CCRYGG 1 cut(s) 52
BstF5I GGATG 3 cut(s) 277, 587, 677
BstKTI GATC 3 cut(s) 59, 88, 261
BstMAI GTCTC 1 cut(s) 513
BstMBI GATC 3 cut(s) 56, 85, 258
BstMWI GCNNNNNNNGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 2 cut(s) 272, 312
BsuRI GGCC 3 cut(s) 123, 280, 482
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 3 cut(s) 277, 587, 677
BtsI GCAGTG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 1 cut(s) 429
CciI TCATGA 1 cut(s) 181
Cfr13I GGNCC 2 cut(s) 49, 278
CseI GACGC 1 cut(s) 645
Csp6I GTAC 4 cut(s) 62, 70, 146, 152
CviAII CATG 2 cut(s) 182, 381
CviJI RGCY 8 cut(s) 105, 118, 123, 179, 280, 427, 482, 627
CviKI_1 RGCY 8 cut(s) 105, 118, 123, 179, 280, 427, 482, 627
CviQI GTAC 4 cut(s) 62, 70, 146, 152
DpnI GATC 3 cut(s) 58, 87, 260
DpnII GATC 3 cut(s) 56, 85, 258
DraI TTTAAA 1 cut(s) 474
DraIII CACNNNGTG 1 cut(s) 160
DrdI GACNNNNNNGTC 1 cut(s) 642
DseDI GACNNNNNNGTC 1 cut(s) 642
EaeI YGGCCR 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 181
Eco47I GGWCC 1 cut(s) 49
Eco53kI GAGCTC 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 124
EcoT22I ATGCAT 1 cut(s) 382
EcoT38I GRGCYC 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 2 cut(s) 185, 384
FaiI YATR 3 cut(s) 168, 183, 382
FatI CATG 2 cut(s) 181, 380
FblI GTMKAC 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 315, 480, 555
FokI GGATG 3 cut(s) 284, 574, 664
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 3 cut(s) 315, 480, 555
GluI GCNGC 3 cut(s) 315, 480, 555
HaeIII GGCC 3 cut(s) 123, 280, 482
HgaI GACGC 1 cut(s) 645
Hin1I GRCGYC 1 cut(s) 637
Hin1II CATG 2 cut(s) 185, 384
HincII GTYRAC 1 cut(s) 534
HindII GTYRAC 1 cut(s) 534
HinfI GANTC 2 cut(s) 435, 495
HpaI GTTAAC 1 cut(s) 534
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 8 cut(s) 70, 82, 133, 146, 154, 237, 490, 534
Hpy188I TCNGA 1 cut(s) 176
Hpy188III TCNNGA 4 cut(s) 182, 198, 262, 684
Hpy8I GTNNAC 8 cut(s) 70, 82, 133, 146, 154, 237, 490, 534
HpyAV CCTTC 5 cut(s) 203, 509, 585, 606, 663
HpyCH4III ACNGT 2 cut(s) 53, 158
HpyCH4V TGCA 6 cut(s) 24, 314, 360, 372, 380, 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 637
Hsp92II CATG 2 cut(s) 185, 384
KpnI GGTACC 1 cut(s) 65
KspAI GTTAAC 1 cut(s) 534
Kzo9I GATC 3 cut(s) 56, 85, 258
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 8 cut(s) 78, 126, 183, 381, 445, 477, 585, 601
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 367
MaeIII GTNAC 3 cut(s) 227, 466, 543
MalI GATC 3 cut(s) 58, 87, 260
MboI GATC 3 cut(s) 56, 85, 258
MboII GAAGA 6 cut(s) 277, 317, 452, 512, 573, 666
MfeI CAATTG 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 7 cut(s) 201, 252, 319, 340, 405, 451, 560
MmeI TCCRAC 2 cut(s) 215, 282
Mph1103I ATGCAT 1 cut(s) 382
MseI TTAA 4 cut(s) 99, 420, 473, 533
MslI CAYNNNNRTG 1 cut(s) 141
MunI CAATTG 1 cut(s) 451
MwoI GCNNNNNNNGC 1 cut(s) 176
NdeII GATC 3 cut(s) 56, 85, 258
NlaIII CATG 2 cut(s) 185, 384
NlaIV GGNNCC 2 cut(s) 63, 443
NmuCI GTSAC 3 cut(s) 227, 466, 543
NsiI ATGCAT 1 cut(s) 382
NspI RCATGY 1 cut(s) 384
PagI TCATGA 1 cut(s) 181
PfeI GAWTC 2 cut(s) 435, 495
PflMI CCANNNNNTGG 1 cut(s) 197
PkrI GCNGC 3 cut(s) 316, 481, 556
Psp124BI GAGCTC 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 63, 443
PspPI GGNCC 2 cut(s) 49, 278
RsaI GTAC 4 cut(s) 63, 71, 147, 153
RsaNI GTAC 4 cut(s) 62, 70, 146, 152
RseI CAYNNNNRTG 1 cut(s) 141
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 4 cut(s) 99, 420, 473, 533
SatI GCNGC 3 cut(s) 315, 480, 555
Sau3AI GATC 3 cut(s) 56, 85, 258
Sau96I GGNCC 2 cut(s) 49, 278
SduI GDGCHC 1 cut(s) 181
SetI ASST 6 cut(s) 67, 75, 97, 181, 291, 312
SfaNI GCATC 1 cut(s) 367
SinI GGWCC 1 cut(s) 49
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 7 cut(s) 201, 252, 319, 340, 405, 451, 560
SsiI CCGC 3 cut(s) 479, 554, 613
SstI GAGCTC 1 cut(s) 181
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 2 cut(s) 53, 158
TaqI TCGA 1 cut(s) 498
TasI AATT 7 cut(s) 201, 252, 319, 340, 405, 451, 560
TatI WGTACW 2 cut(s) 145, 151
TauI GCSGC 2 cut(s) 482, 557
TfiI GAWTC 2 cut(s) 435, 495
Tru1I TTAA 4 cut(s) 99, 420, 473, 533
Tru9I TTAA 4 cut(s) 99, 420, 473, 533
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 3 cut(s) 227, 466, 543
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 3 cut(s) 227, 466, 543
TspDTI ATGAA 4 cut(s) 528, 567, 573, 666
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 303
Van91I CCANNNNNTGG 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 49
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 384
XcmI CCANNNNNNNNNTGG 1 cut(s) 411
XmiI GTMKAC 1 cut(s) 81
Zsp2I ATGCAT 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.