Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004001

Physical Location & Seq

Genomic Coordinates Forward (+)

21808801 .. 21811038

Gene Structure 2238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGTTTCGCTACTGAACGTGAGAACTTCGTCTACCTTGCCAAGCTCGCTGAGCAGGCAGAGCGATACGATGCATGGTTAACAGAGATGGTCGATGCAATGAAGAAGGTAGCAAATCTTGATGTTGAATTGACAGTTGAAGAGAGAAACTTACTTTCTGTTGGGTACAAGAATGTTGTTGGTGCTCGTAGGGCATCATGGAGGATCCTATCATCAATAGAGCAGAAAGAGGAATCAAGAGGAAATGAGAGTCATGTGAAGCAACACAAGGAGTATAGACAGAAGGTTGAATCAGAGCTCTCAACCATTTGTATTGATATCATGGCAGTGATCGATGAGCATCTCATTCCTTCAGCTACAGTTGGTGAATCAACTGTTTTCTATTATAAGATGAAAGGAGATTATTATAGGTACCTTGCAGAATTTAAGAGTGGTGACGATAAAACTGAGGCTGCTGAACAGTCAAAGAAAGCGTACGAGACTGCCACCACCACTGCTGAGGCCGAGTTGCCTTCTACACATCCCATCCGTTTGGGTCTGGCTCTGAATTTCTCAGTCTTCTATGATGAGATCATGAATTCTCCAGAAAGGTTTGTAGGATGCTATTTAAAGGTTGATTACTGTTACGTTTATGTCAAAATTCCCTTCTTGATGTGGATGCTATTTTCCAGGGCTTGCCACCTTGCAAAGACAGCTTTTGATGAAGCTATTGCTGAGCTTGATTCTTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAGCTTCTAAGGGACAACCTCACGTTGTGGACTTCTGACCTTCCAGAAGATGGAGGTGATATTAATAATTATTTCAGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

283

Amino Acids

32.48

Weight (kDa)

4.88

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
14-3-3	PF00244	13 - 197	2.2e-78	14-3-3 protein
14-3-3	PF00244	223 - 266	1.3e-17	14-3-3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42590 AT2G42590 AT2G42590
fragaria_vesca	FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810 FvH4_3g07810
malus_domestica	MD00G1176300.v1.1 MD05G1301400.v1.1 MD10G1280300.v1.1 MD17G1231000.v1.1
prunus_persica	Prupe.3G121100_v2.0.a1 Prupe.3G121100_v2.0.a1 Prupe.3G121100_v2.0.a1 Prupe.4G061000_v2.0.a1 Prupe.4G061000_v2.0.a1
pyrus_communis	pycom09g15690 pycom10g23410 pycom17g23420
rosa_chinensis	RchiOBHm_Chr5g0010761
rosa_laevigata	RLG00000031777
rosa_multiflora	Rmu_sc0000109.1_g000023
rosa_roxburghii	Rroxscaffold_1G00065620
rosa_rugosa	Rorug04G0452100 Rorug04G0452100
rosa_samantha	Rh5AG083900 Rh5BG079100 Rh5CG091900 Rh5DG079300
rosa_wichuraiana	Rw0G000590 Rw0G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	387
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccB7I	CCANNNNNTGG	1 cut(s)	815
AccI	GTMKAC	1 cut(s)	33
AclWI	GGATC	2 cut(s)	199, 212
AcsI	RAATTY	4 cut(s)	422, 547, 577, 639
AcuI	CTGAAG	1 cut(s)	336
AdeI	CACNNNGTG	1 cut(s)	792
AfaI	GTAC	3 cut(s)	167, 413, 476
AfiI	CCNNNNNNNGG	1 cut(s)	815
AgsI	TTSAA	4 cut(s)	128, 140, 290, 730
AjnI	CCWGG	1 cut(s)	668
AluBI	AGCT	7 cut(s)	46, 298, 356, 695, 707, 718, 769
AluI	AGCT	7 cut(s)	46, 298, 356, 695, 707, 718, 769
Alw21I	GWGCWC	2 cut(s)	187, 300
Alw26I	GTCTC	1 cut(s)	473
AlwI	GGATC	2 cut(s)	199, 212
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	2 cut(s)	452, 766
ApoI	RAATTY	4 cut(s)	422, 547, 577, 639
AseI	ATTAAT	1 cut(s)	828
Asp718I	GGTACC	1 cut(s)	411
AsuHPI	GGTGA	3 cut(s)	377, 446, 833
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	550
Bbv12I	GWGCWC	2 cut(s)	187, 300
BbvCI	CCTCAGC	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	439, 778
BccI	CCATC	3 cut(s)	82, 533, 809
BciT130I	CCWGG	1 cut(s)	670
BcoDI	GTCTC	1 cut(s)	473
BfmI	CTRYAG	1 cut(s)	357
BisI	GCNGC	2 cut(s)	453, 767
BlpI	GCTNAGC	2 cut(s)	51, 714
BlsI	GCNGC	2 cut(s)	454, 768
Bme1390I	CCNGG	1 cut(s)	670
BmiI	GGNNCC	2 cut(s)	206, 413
BmrFI	CCNGG	1 cut(s)	670
BmsI	GCATC	6 cut(s)	61, 85, 203, 349, 590, 648
BpiI	GAAGAC	1 cut(s)	550
BpmI	CTGGAG	1 cut(s)	567
Bpu10I	CCTNAGC	1 cut(s)	498
Bpu1102I	GCTNAGC	2 cut(s)	51, 714
Bsa29I	ATCGAT	1 cut(s)	333
BsaBI	GATNNNNATC	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	669
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse3DI	GCAATG	1 cut(s)	105
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	670
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	669
BseGI	GGATG	4 cut(s)	520, 525, 605, 663
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMI	GCAATG	1 cut(s)	105
BseMII	CTCAG	5 cut(s)	42, 438, 489, 567, 705
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	2 cut(s)	439, 778
BshFI	GGCC	1 cut(s)	503
BshNI	GGYRCC	1 cut(s)	411
BshVI	ATCGAT	1 cut(s)	333
BsiHKAI	GWGCWC	2 cut(s)	187, 300
BsiWI	CGTACG	1 cut(s)	474
BslFI	GGGAC	1 cut(s)	791
BslI	CCNNNNNNNGG	1 cut(s)	815
BsmAI	GTCTC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	791
BsnI	GGCC	1 cut(s)	503
Bsp1286I	GDGCHC	2 cut(s)	187, 300
Bsp143I	GATC	3 cut(s)	204, 330, 570
Bsp1720I	GCTNAGC	2 cut(s)	51, 714
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	5 cut(s)	43, 439, 490, 566, 706
BspDI	ATCGAT	1 cut(s)	333
BspHI	TCATGA	1 cut(s)	573
BspLI	GGNNCC	2 cut(s)	206, 413
BspPI	GGATC	2 cut(s)	199, 212
BspT107I	GGYRCC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	669
BssMI	GATC	3 cut(s)	204, 330, 570
Bst2UI	CCWGG	1 cut(s)	670
Bst4CI	ACNGT	5 cut(s)	136, 361, 376, 462, 623
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	3 cut(s)	48, 57, 676
BstDEI	CTNAG	6 cut(s)	51, 447, 498, 553, 714, 773
BstF5I	GGATG	4 cut(s)	520, 525, 605, 663
BstKTI	GATC	3 cut(s)	207, 333, 573
BstMAI	GTCTC	1 cut(s)	473
BstMBI	GATC	3 cut(s)	204, 330, 570
BstMWI	GCNNNNNNNGC	6 cut(s)	47, 52, 56, 61, 191, 692
BstNI	CCWGG	1 cut(s)	670
BstSCI	CCNGG	1 cut(s)	668
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	439, 778
BstV2I	GAAGAC	1 cut(s)	550
BstX2I	RGATCY	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	333
BsuRI	GGCC	1 cut(s)	503
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	4 cut(s)	520, 525, 605, 663
BtsI	GCAGTG	2 cut(s)	333, 492
BtsIMutI	CAGTG	2 cut(s)	333, 492
Cac8I	GCNNGC	3 cut(s)	48, 57, 676
CciI	TCATGA	1 cut(s)	573
ClaI	ATCGAT	1 cut(s)	333
Csp6I	GTAC	3 cut(s)	166, 412, 475
CviAII	CATG	6 cut(s)	75, 198, 254, 322, 574, 763
CviQI	GTAC	3 cut(s)	166, 412, 475
DdeI	CTNAG	6 cut(s)	51, 447, 498, 553, 714, 773
DpnI	GATC	3 cut(s)	206, 332, 572
DpnII	GATC	3 cut(s)	204, 330, 570
DraI	TTTAAA	1 cut(s)	609
DraIII	CACNNNGTG	1 cut(s)	792
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco32I	GATATC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	298
EcoRI	GAATTC	1 cut(s)	577
EcoRII	CCWGG	1 cut(s)	668
EcoRV	GATATC	1 cut(s)	319
EcoT22I	ATGCAT	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	300
FaeI	CATG	6 cut(s)	78, 201, 257, 325, 577, 766
FaqI	GGGAC	1 cut(s)	791
FatI	CATG	6 cut(s)	74, 197, 253, 321, 573, 762
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	453, 767
FokI	GGATG	4 cut(s)	507, 512, 612, 670
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	2 cut(s)	453, 767
GluI	GCNGC	2 cut(s)	453, 767
GsuI	CTGGAG	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	503
Hin1II	CATG	6 cut(s)	78, 201, 257, 325, 577, 766
HincII	GTYRAC	1 cut(s)	81
HindII	GTYRAC	1 cut(s)	81
HinfI	GANTC	6 cut(s)	233, 250, 290, 368, 722, 737
HpaI	GTTAAC	1 cut(s)	81
HphI	GGTGA	3 cut(s)	377, 446, 833
Hpy166II	GTNNAC	3 cut(s)	34, 81, 795
Hpy188I	TCNGA	3 cut(s)	295, 546, 802
Hpy188III	TCNNGA	7 cut(s)	119, 237, 574, 584, 649, 809, 841
Hpy8I	GTNNAC	3 cut(s)	34, 81, 795
HpyAV	CCTTC	6 cut(s)	100, 277, 360, 522, 655, 815
HpyCH4III	ACNGT	5 cut(s)	136, 361, 376, 462, 623
HpyCH4IV	ACGT	3 cut(s)	19, 627, 788
HpyCH4V	TGCA	5 cut(s)	74, 98, 419, 686, 766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	47, 52, 56, 61, 191, 692
HpyF3I	CTNAG	6 cut(s)	51, 447, 498, 553, 714, 773
HpySE526I	ACGT	3 cut(s)	19, 627, 788
Hsp92II	CATG	6 cut(s)	78, 201, 257, 325, 577, 766
KpnI	GGTACC	1 cut(s)	415
KspAI	GTTAAC	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	204, 330, 570
LpnPI	CCDG	7 cut(s)	41, 524, 597, 655, 682, 822, 826
Lsp1109I	GCAGC	2 cut(s)	439, 778
LweI	GCATC	6 cut(s)	61, 85, 203, 349, 590, 648
MaeII	ACGT	3 cut(s)	19, 627, 788
MaeIII	GTNAC	2 cut(s)	434, 623
MalI	GATC	3 cut(s)	206, 332, 572
MboI	GATC	3 cut(s)	204, 330, 570
MboII	GAAGA	4 cut(s)	115, 152, 550, 824
MflI	RGATCY	1 cut(s)	204
MhlI	GDGCHC	2 cut(s)	187, 300
MluCI	AATT	6 cut(s)	128, 422, 547, 577, 639, 832
MlyI	GAGTC	2 cut(s)	259, 746
MnlI	CCTC	8 cut(s)	195, 223, 233, 442, 493, 727, 794, 812
Mph1103I	ATGCAT	1 cut(s)	76
MseI	TTAA	6 cut(s)	80, 426, 608, 758, 828, 847
MslI	CAYNNNNRTG	1 cut(s)	326
MspR9I	CCNGG	1 cut(s)	670
MvaI	CCWGG	1 cut(s)	670
MwoI	GCNNNNNNNGC	6 cut(s)	47, 52, 56, 61, 191, 692
NdeII	GATC	3 cut(s)	204, 330, 570
NlaIII	CATG	6 cut(s)	78, 201, 257, 325, 577, 766
NlaIV	GGNNCC	2 cut(s)	206, 413
NmeAIII	GCCGAG	1 cut(s)	529
NmuCI	GTSAC	1 cut(s)	434
NsiI	ATGCAT	1 cut(s)	76
PagI	TCATGA	1 cut(s)	573
PfeI	GAWTC	4 cut(s)	233, 290, 368, 722
Pfl23II	CGTACG	1 cut(s)	474
PflMI	CCANNNNNTGG	1 cut(s)	815
PkrI	GCNGC	2 cut(s)	454, 768
PleI	GAGTC	2 cut(s)	258, 745
PpsI	GAGTC	2 cut(s)	258, 745
PshBI	ATTAAT	1 cut(s)	828
PsiI	TTATAA	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	668
PspLI	CGTACG	1 cut(s)	474
PspN4I	GGNNCC	2 cut(s)	206, 413
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	3 cut(s)	167, 413, 476
RsaNI	GTAC	3 cut(s)	166, 412, 475
RseI	CAYNNNNRTG	1 cut(s)	326
SacI	GAGCTC	1 cut(s)	300
SaqAI	TTAA	6 cut(s)	80, 426, 608, 758, 828, 847
SatI	GCNGC	2 cut(s)	453, 767
Sau3AI	GATC	3 cut(s)	204, 330, 570
SchI	GAGTC	2 cut(s)	259, 746
ScrFI	CCNGG	1 cut(s)	670
SduI	GDGCHC	2 cut(s)	187, 300
SfaNI	GCATC	6 cut(s)	61, 85, 203, 349, 590, 648
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	326
Sse9I	AATT	6 cut(s)	128, 422, 547, 577, 639, 832
SstI	GAGCTC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	668
TaaI	ACNGT	5 cut(s)	136, 361, 376, 462, 623
TaiI	ACGT	3 cut(s)	22, 630, 791
TaqI	TCGA	2 cut(s)	93, 333
TasI	AATT	6 cut(s)	128, 422, 547, 577, 639, 832
TfiI	GAWTC	4 cut(s)	233, 290, 368, 722
Tru1I	TTAA	6 cut(s)	80, 426, 608, 758, 828, 847
Tru9I	TTAA	6 cut(s)	80, 426, 608, 758, 828, 847
TscAI	CASTG	2 cut(s)	333, 499
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	2 cut(s)	452, 766
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	116, 407, 590, 717
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	2 cut(s)	333, 499
Van91I	CCANNNNNTGG	1 cut(s)	815
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	4 cut(s)	422, 547, 577, 639
XmiI	GTMKAC	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.