pycom17g24320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014299
Physical Location & Seq
Reverse (-)
22644963 .. 22645706
744 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 744 bp
ATGGTGATGAAGCTCAAAACAATTAGCCCCGCCAAGTTCTTCGGAAACACCCTCCCCCGGCCCCGCTTCTACACCGATGTCAAGTTCAATGACCACCGCGTCGACCCGCCTGCCGACGTCCTCGACCCCTTTCTCTCTTGGGCCAACGAGGCCCACTGGTCCATGGGCGGCCTCAGCTTCAAGCGCCTCAGGCTCCAGGGCCGCATCGAAGGCAGTGTCGGCAAACTCCGCGCGCAGAGGGAGAAGATCGAGAATGAGAAGCAAAAGCTTGCGAAATCTGCAAATGGGTCGGGTCGTAATCAGCCCAGCGGCAAGAGAGCTTCCTCCGATTCACCCCCTCCGGCTCCGCGTGTGACAAAACGGCGGAGGTTCTTGGATGTGATTAGTGAGAGCGATGAGGAGGAACAGGAGGCAGAGGTTGTGAAGGGGAAGAAGCTTGTGAAGAAGCTGGCGGATGAGTTTGATAAGGTGGCTATGGAGGCTGAGAGGGGTAACAGCGTGAGCCCTTCAAAGGGTTTGAGTGGTGGATCGGAGGAAGTGGCCACAAGGAGGACTCGGAGCCGGAGATCCGAGGAAGAGGAGCCTGCGGAGACTGTGCTGAAGGTGGCGGAGGAGGTGAATAAGCTGAGTTTCAAGGACAAGAAATTGAAGGGTAAAAGCAGCAAGGGGAAGGAAAACAAAGAGAAGGCCTCCGGTAATGTAAATGGTACTAGGACTTCGCCCAGATTGGCAAAACGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

248

Amino Acids

27.53

Weight (kDa)

10.04

Isoelectric Point (pI)

60.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014299)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G52270 AT4G28310
fragaria_vesca FvH4_6g26250
malus_domestica MD17G1239900.v1.1
prunus_persica Prupe.3G132500_v2.0.a1
pyrus_communis pycom09g16430 pycom17g24320
rosa_chinensis RchiOBHm_Chr2g0126621
rosa_laevigata RLG00000018914
rosa_multiflora Rmu_sc0002369.1_g000021 Rmu_sc0007463.1_g000014
rosa_roxburghii Rroxscaffold_2G00117070
rosa_rugosa Rorug02G0264000
rosa_samantha Rh2AG321000 Rh2BG329300 Rh2DG348700
rosa_wichuraiana Rw2G026010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 102
AccII CGCG 4 cut(s) 99, 231, 233, 349
AclWI GGATC 2 cut(s) 535, 561
AcoI YGGCCR 1 cut(s) 540
AcuI CTGAAG 1 cut(s) 620
AcyI GRCGYC 1 cut(s) 117
AfaI GTAC 1 cut(s) 709
AfiI CCNNNNNNNGG 4 cut(s) 57, 511, 512, 549
AgsI TTSAA 5 cut(s) 88, 181, 510, 634, 649
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 8 cut(s) 13, 177, 268, 320, 436, 448, 625, 741
AluI AGCT 8 cut(s) 13, 177, 268, 320, 436, 448, 625, 741
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 2 cut(s) 535, 561
AoxI GGCC 7 cut(s) 59, 141, 150, 169, 199, 540, 687
ApeKI GCWGC 1 cut(s) 660
ArsI GACNNNNNNTTYG 2 cut(s) 201, 233
AspLEI GCGC 3 cut(s) 186, 233, 235
AspS9I GGNCC 5 cut(s) 60, 141, 151, 159, 199
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 16, 324, 628
AvaII GGWCC 1 cut(s) 159
AxyI CCTNAGG 1 cut(s) 188
BalI TGGCCA 1 cut(s) 542
BanII GRGCYC 1 cut(s) 506
BarI GAAGNNNNNNTAC 2 cut(s) 700, 732
BbvCI CCTCAGC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 672
BceAI ACGGC 1 cut(s) 377
BcgI CGANNNNNNTGC 4 cut(s) 92, 126, 270, 304
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 187
BglI GCCNNNNNGGC 1 cut(s) 149
BisI GCNGC 4 cut(s) 169, 202, 310, 661
BlsI GCNGC 4 cut(s) 170, 203, 311, 662
Bme1390I CCNGG 2 cut(s) 58, 197
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 5 cut(s) 60, 141, 151, 159, 199
BmiI GGNNCC 5 cut(s) 62, 194, 345, 560, 582
BmrFI CCNGG 2 cut(s) 58, 197
BmsI GCATC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 674, 706
BpmI CTGGAG 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 58
BsaHI GRCGYC 1 cut(s) 117
BsaJI CCNNGG 4 cut(s) 56, 162, 196, 570
BsaWI WCCGGW 1 cut(s) 692
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 511, 512, 549
Bse1I ACTGG 1 cut(s) 161
Bse21I CCTNAGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 4 cut(s) 56, 162, 196, 570
BseGI GGATG 2 cut(s) 382, 460
BseLI CCNNNNNNNGG 4 cut(s) 57, 511, 512, 549
BseMII CTCAG 4 cut(s) 187, 202, 474, 617
BseNI ACTGG 1 cut(s) 161
BsePI GCGCGC 1 cut(s) 231
BseRI GAGGAG 3 cut(s) 413, 593, 626
BseXI GCAGC 1 cut(s) 672
BseYI CCCAGC 1 cut(s) 305
Bsh1236I CGCG 4 cut(s) 99, 231, 233, 349
BshFI GGCC 7 cut(s) 61, 143, 152, 171, 201, 542, 689
BsiSI CCGG 4 cut(s) 58, 341, 562, 693
BslI CCNNNNNNNGG 4 cut(s) 57, 511, 512, 549
BsmAI GTCTC 1 cut(s) 584
BsnI GGCC 7 cut(s) 61, 143, 152, 171, 201, 542, 689
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 3 cut(s) 246, 527, 566
Bsp19I CCATGG 1 cut(s) 162
BspANI GGCC 7 cut(s) 61, 143, 152, 171, 201, 542, 689
BspCNI CTCAG 4 cut(s) 186, 201, 475, 618
BspFNI CGCG 4 cut(s) 99, 231, 233, 349
BspLI GGNNCC 5 cut(s) 62, 194, 345, 560, 582
BspPI GGATC 2 cut(s) 535, 561
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 4 cut(s) 56, 162, 196, 570
BssHII GCGCGC 1 cut(s) 231
BssMI GATC 3 cut(s) 246, 527, 566
BssNI GRCGYC 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 162
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 595
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 117
BstC8I GCNNGC 5 cut(s) 111, 233, 270, 450, 585
BstDEI CTNAG 4 cut(s) 173, 188, 483, 626
BstDSI CCRYGG 1 cut(s) 162
BstF5I GGATG 2 cut(s) 382, 460
BstFNI CGCG 4 cut(s) 99, 231, 233, 349
BstH2I RGCGCY 1 cut(s) 187
BstHHI GCGC 3 cut(s) 186, 233, 235
BstKTI GATC 3 cut(s) 249, 530, 569
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 3 cut(s) 246, 527, 566
BstMWI GCNNNNNNNGC 9 cut(s) 149, 174, 183, 190, 210, 219, 228, 278, 479
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 56, 195
BstUI CGCG 4 cut(s) 99, 231, 233, 349
BstV1I GCAGC 1 cut(s) 672
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
Bsu36I CCTNAGG 1 cut(s) 188
BsuRI GGCC 7 cut(s) 61, 143, 152, 171, 201, 542, 689
BtgI CCRYGG 1 cut(s) 162
BtgZI GCGATG 1 cut(s) 408
BtsCI GGATG 2 cut(s) 382, 460
BtsI GCAGTG 1 cut(s) 220
BtsIMutI CAGTG 2 cut(s) 154, 220
Cac8I GCNNGC 5 cut(s) 111, 233, 270, 450, 585
CfoI GCGC 3 cut(s) 186, 233, 235
Cfr13I GGNCC 5 cut(s) 60, 141, 151, 159, 199
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 708
CviAII CATG 1 cut(s) 163
CviQI GTAC 1 cut(s) 708
DdeI CTNAG 4 cut(s) 173, 188, 483, 626
DpnI GATC 3 cut(s) 248, 529, 568
DpnII GATC 3 cut(s) 246, 527, 566
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 540
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 3 cut(s) 379, 467, 623
Eco130I CCWWGG 1 cut(s) 162
Eco147I AGGCCT 1 cut(s) 689
Eco24I GRGCYC 1 cut(s) 506
Eco47I GGWCC 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 620
Eco81I CCTNAGG 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 506
ErhI CCWWGG 1 cut(s) 162
FaeI CATG 1 cut(s) 166
FaiI YATR 2 cut(s) 164, 476
FatI CATG 1 cut(s) 162
FauI CCCGC 3 cut(s) 37, 71, 114
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 4 cut(s) 169, 202, 310, 661
FokI GGATG 2 cut(s) 389, 467
FriOI GRGCYC 1 cut(s) 506
Fsp4HI GCNGC 4 cut(s) 169, 202, 310, 661
FspBI CTAG 1 cut(s) 711
GlaI GCGC 3 cut(s) 185, 232, 234
GluI GCNGC 4 cut(s) 169, 202, 310, 661
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 187
HaeIII GGCC 7 cut(s) 61, 143, 152, 171, 201, 542, 689
HapII CCGG 4 cut(s) 58, 341, 562, 693
HgaI GACGC 1 cut(s) 88
HhaI GCGC 3 cut(s) 186, 233, 235
Hin1I GRCGYC 1 cut(s) 117
Hin1II CATG 1 cut(s) 166
Hin6I GCGC 3 cut(s) 184, 231, 233
HinP1I GCGC 3 cut(s) 184, 231, 233
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HindIII AAGCTT 2 cut(s) 266, 434
HinfI GANTC 2 cut(s) 329, 553
HpaII CCGG 4 cut(s) 58, 341, 562, 693
HphI GGTGA 3 cut(s) 16, 324, 628
Hpy166II GTNNAC 1 cut(s) 103
Hpy188I TCNGA 5 cut(s) 44, 328, 532, 558, 571
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 103
Hpy99I CGWCG 2 cut(s) 104, 119
HpyAV CCTTC 7 cut(s) 203, 418, 516, 595, 643, 664, 679
HpyCH4III ACNGT 1 cut(s) 595
HpyCH4IV ACGT 2 cut(s) 117, 736
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 9 cut(s) 149, 174, 183, 190, 210, 219, 228, 278, 479
HpyF3I CTNAG 4 cut(s) 173, 188, 483, 626
HpySE526I ACGT 2 cut(s) 117, 736
Hsp92I GRCGYC 1 cut(s) 117
Hsp92II CATG 1 cut(s) 166
HspAI GCGC 3 cut(s) 184, 231, 233
Kzo9I GATC 3 cut(s) 246, 527, 566
LmnI GCTCC 4 cut(s) 198, 349, 558, 580
Lsp1109I GCAGC 1 cut(s) 672
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 711
MaeII ACGT 2 cut(s) 117, 736
MaeIII GTNAC 2 cut(s) 352, 491
MalI GATC 3 cut(s) 248, 529, 568
MboI GATC 3 cut(s) 246, 527, 566
MboII GAAGA 5 cut(s) 31, 256, 442, 454, 587
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 1 cut(s) 506
MlsI TGGCCA 1 cut(s) 542
MluCI AATT 2 cut(s) 21, 644
MluNI TGGCCA 1 cut(s) 542
MlyI GAGTC 1 cut(s) 547
Mox20I TGGCCA 1 cut(s) 542
MscI TGGCCA 1 cut(s) 542
Msp20I TGGCCA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 309
MspI CCGG 4 cut(s) 58, 341, 562, 693
MspR9I CCNGG 2 cut(s) 58, 197
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 4 cut(s) 99, 231, 233, 349
MwoI GCNNNNNNNGC 9 cut(s) 149, 174, 183, 190, 210, 219, 228, 278, 479
NciI CCSGG 1 cut(s) 58
NcoI CCATGG 1 cut(s) 162
NdeII GATC 3 cut(s) 246, 527, 566
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 5 cut(s) 62, 194, 345, 560, 582
NmuCI GTSAC 1 cut(s) 352
PauI GCGCGC 1 cut(s) 231
PceI AGGCCT 1 cut(s) 689
PfeI GAWTC 1 cut(s) 329
PkrI GCNGC 4 cut(s) 170, 203, 311, 662
PleI GAGTC 1 cut(s) 547
PpsI GAGTC 1 cut(s) 547
Psp6I CCWGG 1 cut(s) 195
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 5 cut(s) 62, 194, 345, 560, 582
PspPI GGNCC 5 cut(s) 60, 141, 151, 159, 199
PsuI RGATCY 1 cut(s) 566
PteI GCGCGC 1 cut(s) 231
RsaI GTAC 1 cut(s) 709
RsaNI GTAC 1 cut(s) 708
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 4 cut(s) 169, 202, 310, 661
Sau3AI GATC 3 cut(s) 246, 527, 566
Sau96I GGNCC 5 cut(s) 60, 141, 151, 159, 199
SchI GAGTC 1 cut(s) 547
ScrFI CCNGG 2 cut(s) 58, 197
SduI GDGCHC 1 cut(s) 506
SfaNI GCATC 1 cut(s) 213
SfiI GGCCNNNNNGGCC 1 cut(s) 149
SinI GGWCC 1 cut(s) 159
Sse9I AATT 2 cut(s) 21, 644
SseBI AGGCCT 1 cut(s) 689
SspMI CTAG 1 cut(s) 711
StuI AGGCCT 1 cut(s) 689
StyD4I CCNGG 2 cut(s) 56, 195
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 595
TaiI ACGT 2 cut(s) 120, 739
TaqI TCGA 4 cut(s) 102, 123, 207, 249
TasI AATT 2 cut(s) 21, 644
TauI GCSGC 3 cut(s) 171, 204, 312
TfiI GAWTC 1 cut(s) 329
TscAI CASTG 2 cut(s) 161, 220
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 1 cut(s) 660
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 1 cut(s) 23
TspRI CASTG 2 cut(s) 161, 220
VpaK11BI GGWCC 1 cut(s) 159
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 711
ZraI GACGTC 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.