pycom17g25120

Thioredoxin-like protein HCF164

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
23271977 .. 23272261
285 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
ATGGATCGTGTAAATTTTGTTATGCTGAATGTTGACAACACAGAGTGGGAACAAGAGCTTGATGAGTTTGGTGTTGAGGGTATTCCACACTTTGCATTCCTAGATAAAGCGGGAAATGAAGAGGGCAACGTGGTAGGCAGGCTTCCAGAAAAGTACCTGCTTGAGAATGTGGATGCTCTTGCCCGTGGAGAAGCCTCCACACCTCATGCTCGTGTAGTGGGGCAGTTTTCAAGCGCTGAAGGCAGAAAGGTTCACCAAGTTCCTGATCCAAGAAGTCACGGATAG

Protein Analysis

95

Amino Acids

10.46

Weight (kDa)

4.81

Isoelectric Point (pI)

10.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 165
AciI CCGC 1 cut(s) 110
AclWI GGATC 2 cut(s) 12, 260
AcsI RAATTY 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 258
AdeI CACNNNGTG 1 cut(s) 45
AfaI GTAC 1 cut(s) 155
AfeI AGCGCT 1 cut(s) 235
AgsI TTSAA 1 cut(s) 231
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AlwI GGATC 2 cut(s) 12, 260
Aor51HI AGCGCT 1 cut(s) 235
ApoI RAATTY 1 cut(s) 13
AspLEI GCGC 1 cut(s) 236
AsuHPI GGTGA 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BauI CACGAG 1 cut(s) 210
BfaI CTAG 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 237
BfuAI ACCTGC 1 cut(s) 165
BmsI GCATC 1 cut(s) 163
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 184
BseDI CCNNGG 1 cut(s) 184
BseGI GGATG 1 cut(s) 178
BsmI GAATGC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 4, 265
BspACI CCGC 1 cut(s) 110
BspMI ACCTGC 1 cut(s) 165
BspPI GGATC 2 cut(s) 12, 260
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 2 cut(s) 4, 265
BssSI CACGAG 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 210
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 184
BstF5I GGATG 1 cut(s) 178
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 2 cut(s) 7, 268
BstMBI GATC 2 cut(s) 4, 265
BstMWI GCNNNNNNNGC 1 cut(s) 240
BtgI CCRYGG 1 cut(s) 184
BtsCI GGATG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 140
CfoI GCGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 206
CviJI RGCY 3 cut(s) 58, 142, 194
CviKI_1 RGCY 3 cut(s) 58, 142, 194
CviQI GTAC 1 cut(s) 154
DpnI GATC 2 cut(s) 6, 267
DpnII GATC 2 cut(s) 4, 265
DraIII CACNNNGTG 1 cut(s) 45
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco47III AGCGCT 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 258
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 23, 207
FatI CATG 1 cut(s) 205
FauI CCCGC 1 cut(s) 103
FokI GGATG 1 cut(s) 185
FspBI CTAG 1 cut(s) 101
GlaI GCGC 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 237
HhaI GCGC 1 cut(s) 236
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 34, 253
Hpy188III TCNNGA 2 cut(s) 146, 263
Hpy8I GTNNAC 2 cut(s) 34, 253
HpyAV CCTTC 1 cut(s) 233
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 129
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 2 cut(s) 4, 265
LpnPI CCDG 4 cut(s) 124, 159, 170, 276
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 6, 267
MboI GATC 2 cut(s) 4, 265
MboII GAAGA 1 cut(s) 131
MluCI AATT 1 cut(s) 13
MnlI CCTC 4 cut(s) 70, 115, 205, 213
MslI CAYNNNNRTG 1 cut(s) 210
Mva1269I GAATGC 1 cut(s) 95
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeII GATC 2 cut(s) 4, 265
NlaIII CATG 1 cut(s) 209
NmuCI GTSAC 1 cut(s) 275
PctI GAATGC 1 cut(s) 95
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 210
Sau3AI GATC 2 cut(s) 4, 265
SetI ASST 5 cut(s) 60, 132, 159, 205, 252
SfaNI GCATC 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 161
SmoI CTYRAG 1 cut(s) 161
Sse9I AATT 1 cut(s) 13
SsiI CCGC 1 cut(s) 110
SspMI CTAG 1 cut(s) 101
TaiI ACGT 1 cut(s) 132
TasI AATT 1 cut(s) 13
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 1 cut(s) 132
XapI RAATTY 1 cut(s) 13
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.