pycom17g26320

PLATZ transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0014646
Physical Location & Seq
Forward (+)
24622835 .. 24625207
2373 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1167 bp
ATGAAGATTGAAGCATCACAATTCATTGGGAATTATCAACTTAATGAAAGCAGAGATGAAGTAGTGGAAGTTGCAAGCGACTTGAGGAATGAAAGCTTGACGAGGGAACAAAATTTAAGCAAAAAAGAGGTTAAGAATGGAAATCAAAAGCCCGAATGGCTCGATTCATTTATAAAAATAATCTTTTTCGATACCTGTCCAGATCATCCTGTAGACAAGAATGAAAAGAACAGATACTTGAATGAAAGGAACAGATACTGTGTTGATTGTAACACAGCAGCCTGCCAGTACTGCGTTGATTCTGGTGATCATCGACATCACCGAACATTGCAAATTTACCACTATATCTATCAGGGTGCTGTCCCACTTGATGCCATGAAAAAGCATATGGATTGTTCCCAAATTCAGCCATATAGATCCAACAAGAAATTGGTTCTACCTCAGACCCCACTTCCCCGCTTCGGATCAAAAAATGACTCTGCCAATGATGAAGGGTGCTGTGAGATTTGTAAAAGAACATTACGTGAACCAGATCGTCATCGCTATTGCTGTATTTCTTGCAAGGAAATTTGCATTAGTACCCGAACCCGAACCCCAGTCCTTATTCAGTCTCTGCAGCAAATGGAAAAAGCATCAGAGCAGTCGAACCTGAGACAGGGTTCAATTCTAGGAGGCACCAGTGAAACAAAACATGCAGAGCATACAAACAGCGGTGGAACAGTAAACCCAATTCCAAAATCAAGGAAACGATCAAATTATACGAAGGAAATTGGAGTTTCAACCTGTGCATCGGCAGAGCTTGCAGAAGGGTTCTTCAGAGGTCTTGACGGCCTCTTCAATGGTGTAAAGAGGGACAACCATGCTTCTATTTTCATGCACAAGAAGAGTGCACCAAATCGACGTCCTCTTGAAGGAAGAGTCGAATGTTATCGCGAAACGGTCATTCTTTGTTTCTTTATTTCTTTCCCTCTCTCCCATCACCCTCCTTTATCCTTCCTTTCTGTCTTATACTTTTCTCATATCTCAAGCACAAAAAGTAAAAACGGAATGGTTATCAACATGTCTTCAATCTCTTTGAAGAGCACCTTTTTGCAGATGAAAGTTGTGGATGATGCACATATACGAATGAGCCTGAATGTTTTGAACACGAGGGGCCAAAGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PLATZ zf-B_box

Protein Analysis

389

Amino Acids

44.22

Weight (kDa)

8.97

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PLATZ PF04640 115 - 188 2.8e-15 PLATZ transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014646)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g26670 FvH4_1g29980
malus_domestica MD17G1254800.v1.1
prunus_persica Prupe.3G164700_v2.0.a1
pyrus_communis pycom17g26320
rosa_chinensis RchiOBHm_Chr3g0492341
rosa_laevigata RLG00000022780
rosa_multiflora Rmu_sc0003156.1_g000025
rosa_roxburghii Rroxscaffold_6G00392400
rosa_rugosa Rorug03G0227500.1 Rorug03G0253400
rosa_samantha Rh3AG303300 Rh3BG312700 Rh3BG339400 Rh3CG336500 Rh3DG338600
rosa_wichuraiana Rw3G026760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 173
AatII GACGTC 1 cut(s) 904
AccB1I GGYRCC 1 cut(s) 674
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 933
AciI CCGC 2 cut(s) 457, 711
AclWI GGATC 2 cut(s) 411, 472
AcsI RAATTY 4 cut(s) 112, 333, 402, 567
AcuI CTGAAG 1 cut(s) 799
AcyI GRCGYC 1 cut(s) 901
AfaI GTAC 2 cut(s) 290, 580
AfiI CCNNNNNNNGG 3 cut(s) 461, 655, 911
AflIII ACRYGT 1 cut(s) 1059
AgsI TTSAA 9 cut(s) 11, 241, 663, 780, 838, 911, 1068, 1078, 1144
AluBI AGCT 2 cut(s) 96, 799
AluI AGCT 2 cut(s) 96, 799
Alw21I GWGCWC 2 cut(s) 892, 1085
Alw26I GTCTC 2 cut(s) 615, 646
Alw44I GTGCAC 1 cut(s) 888
AlwI GGATC 2 cut(s) 411, 472
AlwNI CAGNNNCTG 2 cut(s) 258, 613
AoxI GGCC 2 cut(s) 829, 1153
ApaLI GTGCAC 1 cut(s) 888
ApeKI GCWGC 2 cut(s) 278, 616
ApoI RAATTY 4 cut(s) 112, 333, 402, 567
AspS9I GGNCC 1 cut(s) 1153
AsuHPI GGTGA 3 cut(s) 311, 317, 971
BaeGI GKGCMC 1 cut(s) 892
BanI GGYRCC 1 cut(s) 674
BauI CACGAG 1 cut(s) 1147
BbsI GAAGAC 1 cut(s) 1056
Bbv12I GWGCWC 2 cut(s) 892, 1085
BbvI GCAGC 2 cut(s) 290, 628
BccI CCATC 1 cut(s) 984
BceAI ACGGC 1 cut(s) 844
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 615, 646
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 2 cut(s) 210, 614
BglI GCCNNNNNGGC 1 cut(s) 157
BisI GCNGC 2 cut(s) 279, 617
BlsI GCNGC 2 cut(s) 280, 618
BmcAI AGTACT 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 1153
BmiI GGNNCC 2 cut(s) 676, 1154
BmrI ACTGGG 1 cut(s) 590
BmsI GCATC 5 cut(s) 23, 361, 641, 797, 1102
BmuI ACTGGG 1 cut(s) 590
BpiI GAAGAC 1 cut(s) 1056
BpuEI CTTGAG 2 cut(s) 103, 1009
BsaAI YACGTR 1 cut(s) 524
BsaBI GATNNNNATC 1 cut(s) 537
BsaHI GRCGYC 1 cut(s) 901
Bsc4I CCNNNNNNNGG 3 cut(s) 461, 655, 911
Bse1I ACTGG 3 cut(s) 286, 596, 678
Bse3DI GCAATG 1 cut(s) 326
Bse8I GATNNNNATC 1 cut(s) 537
BseGI GGATG 2 cut(s) 205, 1114
BseJI GATNNNNATC 1 cut(s) 537
BseLI CCNNNNNNNGG 3 cut(s) 461, 655, 911
BseMI GCAATG 1 cut(s) 326
BseMII CTCAG 2 cut(s) 455, 641
BseNI ACTGG 3 cut(s) 286, 596, 678
BseSI GKGCMC 1 cut(s) 892
BseXI GCAGC 2 cut(s) 290, 628
Bsh1236I CGCG 1 cut(s) 933
BshFI GGCC 2 cut(s) 831, 1155
BshNI GGYRCC 1 cut(s) 674
BsiHKAI GWGCWC 2 cut(s) 892, 1085
BslFI GGGAC 2 cut(s) 347, 866
BslI CCNNNNNNNGG 3 cut(s) 461, 655, 911
BsmAI GTCTC 2 cut(s) 615, 646
BsmFI GGGAC 2 cut(s) 347, 866
BsnI GGCC 2 cut(s) 831, 1155
Bsp1286I GDGCHC 2 cut(s) 892, 1085
Bsp143I GATC 6 cut(s) 202, 307, 416, 464, 532, 749
Bsp68I TCGCGA 1 cut(s) 933
BspACI CCGC 2 cut(s) 457, 711
BspANI GGCC 2 cut(s) 831, 1155
BspCNI CTCAG 2 cut(s) 454, 642
BspFNI CGCG 1 cut(s) 933
BspLI GGNNCC 2 cut(s) 676, 1154
BspMAI CTGCAG 1 cut(s) 618
BspPI GGATC 2 cut(s) 411, 472
BspQI GCTCTTC 1 cut(s) 1073
BspT107I GGYRCC 1 cut(s) 674
BsrDI GCAATG 1 cut(s) 326
BsrI ACTGG 3 cut(s) 286, 596, 678
BssMI GATC 6 cut(s) 202, 307, 416, 464, 532, 749
BssNI GRCGYC 1 cut(s) 901
BssSI CACGAG 1 cut(s) 1147
Bst2BI CACGAG 1 cut(s) 1147
Bst4CI ACNGT 3 cut(s) 260, 721, 940
Bst6I CTCTTC 4 cut(s) 839, 878, 910, 1073
BstACI GRCGYC 1 cut(s) 901
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBAI YACGTR 1 cut(s) 524
BstC8I GCNNGC 3 cut(s) 76, 283, 801
BstDEI CTNAG 2 cut(s) 441, 650
BstENI CCTNNNNNAGG 2 cut(s) 653, 909
BstF5I GGATG 2 cut(s) 205, 1114
BstFNI CGCG 1 cut(s) 933
BstKTI GATC 6 cut(s) 205, 310, 419, 467, 535, 752
BstMAI GTCTC 2 cut(s) 615, 646
BstMBI GATC 6 cut(s) 202, 307, 416, 464, 532, 749
BstMWI GCNNNNNNNGC 3 cut(s) 157, 291, 800
BstNSI RCATGY 2 cut(s) 695, 1063
BstSFI CTRYAG 2 cut(s) 210, 614
BstSLI GKGCMC 1 cut(s) 892
BstUI CGCG 1 cut(s) 933
BstV1I GCAGC 2 cut(s) 290, 628
BstV2I GAAGAC 1 cut(s) 1056
BstX2I RGATCY 1 cut(s) 416
BstYI RGATCY 1 cut(s) 416
BsuRI GGCC 2 cut(s) 831, 1155
BtgZI GCGATG 1 cut(s) 524
BtsCI GGATG 2 cut(s) 205, 1114
BtsIMutI CAGTG 1 cut(s) 685
BtuMI TCGCGA 1 cut(s) 933
Cac8I GCNNGC 3 cut(s) 76, 283, 801
CaiI CAGNNNCTG 2 cut(s) 258, 613
Cfr13I GGNCC 1 cut(s) 1153
Csp6I GTAC 2 cut(s) 289, 579
CviAII CATG 5 cut(s) 376, 692, 860, 874, 1060
CviJI RGCY 9 cut(s) 96, 151, 160, 281, 409, 799, 831, 1131, 1155
CviKI_1 RGCY 9 cut(s) 96, 151, 160, 281, 409, 799, 831, 1131, 1155
CviQI GTAC 2 cut(s) 289, 579
DdeI CTNAG 2 cut(s) 441, 650
DpnI GATC 6 cut(s) 204, 309, 418, 466, 534, 751
DpnII GATC 6 cut(s) 202, 307, 416, 464, 532, 749
Eam1104I CTCTTC 4 cut(s) 839, 878, 910, 1073
EarI CTCTTC 4 cut(s) 839, 878, 910, 1073
Eco57I CTGAAG 1 cut(s) 799
EcoNI CCTNNNNNAGG 2 cut(s) 653, 909
FaeI CATG 5 cut(s) 379, 695, 863, 877, 1063
FalI AAGNNNNNCTT 2 cut(s) 1070, 1102
FaqI GGGAC 2 cut(s) 347, 866
FatI CATG 5 cut(s) 375, 691, 859, 873, 1059
FauI CCCGC 1 cut(s) 464
FauNDI CATATG 1 cut(s) 387
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 279, 617
FokI GGATG 2 cut(s) 192, 1121
Fsp4HI GCNGC 2 cut(s) 279, 617
FspBI CTAG 1 cut(s) 668
GluI GCNGC 2 cut(s) 279, 617
HaeIII GGCC 2 cut(s) 831, 1155
Hin1I GRCGYC 1 cut(s) 901
Hin1II CATG 5 cut(s) 379, 695, 863, 877, 1063
HindIII AAGCTT 1 cut(s) 94
HinfI GANTC 4 cut(s) 164, 299, 476, 918
HphI GGTGA 3 cut(s) 311, 317, 971
Hpy166II GTNNAC 4 cut(s) 214, 527, 724, 890
Hpy188I TCNGA 4 cut(s) 444, 464, 637, 818
Hpy188III TCNNGA 4 cut(s) 200, 824, 908, 932
Hpy8I GTNNAC 4 cut(s) 214, 527, 724, 890
Hpy99I CGWCG 1 cut(s) 903
HpyAV CCTTC 5 cut(s) 485, 757, 800, 905, 1003
HpyCH4III ACNGT 3 cut(s) 260, 721, 940
HpyCH4IV ACGT 2 cut(s) 523, 901
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 291, 800
HpyF3I CTNAG 2 cut(s) 441, 650
HpySE526I ACGT 2 cut(s) 523, 901
Hsp92I GRCGYC 1 cut(s) 901
Hsp92II CATG 5 cut(s) 379, 695, 863, 877, 1063
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 6 cut(s) 202, 307, 416, 464, 532, 749
LguI GCTCTTC 1 cut(s) 1073
Lsp1109I GCAGC 2 cut(s) 290, 628
LweI GCATC 5 cut(s) 23, 361, 641, 797, 1102
MaeI CTAG 1 cut(s) 668
MaeII ACGT 2 cut(s) 523, 901
MaeIII GTNAC 1 cut(s) 269
MalI GATC 6 cut(s) 204, 309, 418, 466, 534, 751
MboI GATC 6 cut(s) 202, 307, 416, 464, 532, 749
MboII GAAGA 7 cut(s) 16, 805, 826, 895, 927, 1056, 1090
MflI RGATCY 1 cut(s) 416
MhlI GDGCHC 2 cut(s) 892, 1085
MlyI GAGTC 2 cut(s) 470, 927
MmeI TCCRAC 1 cut(s) 444
MseI TTAA 3 cut(s) 42, 116, 132
MspA1I CMGCKG 1 cut(s) 711
MvnI CGCG 1 cut(s) 933
MwoI GCNNNNNNNGC 3 cut(s) 157, 291, 800
NdeI CATATG 1 cut(s) 387
NdeII GATC 6 cut(s) 202, 307, 416, 464, 532, 749
NlaIII CATG 5 cut(s) 379, 695, 863, 877, 1063
NlaIV GGNNCC 2 cut(s) 676, 1154
NruI TCGCGA 1 cut(s) 933
NspI RCATGY 2 cut(s) 695, 1063
PciI ACATGT 1 cut(s) 1059
PciSI GCTCTTC 1 cut(s) 1073
PcsI WCGNNNNNNNCGW 1 cut(s) 319
PfeI GAWTC 2 cut(s) 164, 299
PkrI GCNGC 2 cut(s) 280, 618
PleI GAGTC 2 cut(s) 470, 926
PpsI GAGTC 2 cut(s) 470, 926
Ppu21I YACGTR 1 cut(s) 524
PscI ACATGT 1 cut(s) 1059
PsiI TTATAA 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 676, 1154
PspPI GGNCC 1 cut(s) 1153
PstI CTGCAG 1 cut(s) 618
PstNI CAGNNNCTG 2 cut(s) 258, 613
PsuI RGATCY 1 cut(s) 416
RruI TCGCGA 1 cut(s) 933
RsaI GTAC 2 cut(s) 290, 580
RsaNI GTAC 2 cut(s) 289, 579
SapI GCTCTTC 1 cut(s) 1073
SaqAI TTAA 3 cut(s) 42, 116, 132
SatI GCNGC 2 cut(s) 279, 617
Sau3AI GATC 6 cut(s) 202, 307, 416, 464, 532, 749
Sau96I GGNCC 1 cut(s) 1153
ScaI AGTACT 1 cut(s) 290
SchI GAGTC 2 cut(s) 470, 927
SduI GDGCHC 2 cut(s) 892, 1085
SfaNI GCATC 5 cut(s) 23, 361, 641, 797, 1102
SfcI CTRYAG 2 cut(s) 210, 614
SmlI CTYRAG 2 cut(s) 82, 1024
SmoI CTYRAG 2 cut(s) 82, 1024
SsiI CCGC 2 cut(s) 457, 711
SspMI CTAG 1 cut(s) 668
TaaI ACNGT 3 cut(s) 260, 721, 940
TaiI ACGT 2 cut(s) 526, 904
TaqI TCGA 6 cut(s) 162, 189, 313, 644, 898, 921
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 2 cut(s) 164, 299
Tru1I TTAA 3 cut(s) 42, 116, 132
Tru9I TTAA 3 cut(s) 42, 116, 132
TscAI CASTG 1 cut(s) 685
TseI GCWGC 2 cut(s) 278, 616
TspGWI ACGGA 1 cut(s) 1059
TspRI CASTG 1 cut(s) 685
VneI GTGCAC 1 cut(s) 888
XagI CCTNNNNNAGG 2 cut(s) 653, 909
XapI RAATTY 4 cut(s) 112, 333, 402, 567
XceI RCATGY 2 cut(s) 695, 1063
XcmI CCANNNNNNNNNTGG 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 668
ZraI GACGTC 1 cut(s) 902
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.