Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0010929

Physical Location & Seq

Genomic Coordinates Forward (+)

24662114 .. 24663091

Gene Structure 978 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGAGCAGAAGTACCAACACTACCTATTCTCTTCCTACTCCTCCTCGTCCTCATCTTACCTATCGTGAGCCGTTTGATCTCTACTTCGGGAATTTTGAGGACGATTTTGGTGAATGGGCTTCTGGGATCTCTGGTAGTCCCTTCTATGATAATTTTCAAGCAACTCAAGTAACCAGAACAGGTGCGTCGGATTCAAGGCGACCATTTGAGGGAACGCTAGCGGTTGCAAGATCTCTTGGCTCAGCAGGTTCAGCAGCAGCACCAGGTCCCCGAATTCATTTTCTGGTCCTTGGCGATGATTTGGCACGACAGGCAGACCTGAGGACTAGACAGATGGTCGGTAACCAATGGAATACGGCCGCCCCTGGACTTGAAGCAGACTCCAGATTGACCCATAACGAGCAAAAGAGGGCGTTGCAGAAGCTGAAGAAAGAGATATACAATCCTTTGAGGAGAATATCGAAGAGGGTGAACTTGTATTACAGAGACACAGTTGTGAAGGAGAAGGATATGGAGAATGATGAAAAGAGGTGTACCATTTGCTTGGATGACTTTGAGCCCAAACAAGAGGTTATGCTCACTCCTTGTAAGCATATGTTTCATGAAGAATGCATTGTGCCTTGGGTGAAGAGCAATGGTCGTTGCCCAGTATGTAGGTTCTCCATATCTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

225

Amino Acids

25.53

Weight (kDa)

8.2

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	175 - 223	8e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	177 - 219	1.2e-15	Ring finger domain
zf-C3HC4_2	PF13923	177 - 218	3.4e-10	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	177 - 219	1.5e-08	zinc-RING finger domain
zf-rbx1	PF12678	177 - 219	2.2e-08	RING-H2 zinc finger domain
zf-RING_11	PF17123	178 - 205	1.3e-12	RING-like zinc finger
zf-C3HC4	PF00097	178 - 218	2.2e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	178 - 216	2.5e-07	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G58720 AT3G58720 AT3G58720 AT3G58720
fragaria_vesca	FvH4_6g27790
malus_domestica	MD09G1234400.v1.1 MD17G1263500.v1.1
prunus_persica	Prupe.3G112600_v2.0.a1
pyrus_communis	pycom09g15270 pycom17g26370
rosa_chinensis	RchiOBHm_Chr2g0131091
rosa_laevigata	RLG00000019166
rosa_multiflora	Rmu_sc0003629.1_g000064
rosa_roxburghii	Rroxscaffold_2G00113210
rosa_rugosa	Rorug02G0294900
rosa_samantha	Rh2AG347200 Rh2BG354700 Rh2CG333400 Rh2DG372600
rosa_wichuraiana	Rw2G028190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	236
AciI	CCGC	2 cut(s)	221, 360
AclWI	GGATC	1 cut(s)	134
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	91, 273
AcuI	CTGAAG	1 cut(s)	446
AfaI	GTAC	2 cut(s)	13, 535
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	3 cut(s)	158, 195, 374
AhdI	GACNNNNNGTC	1 cut(s)	335
AjnI	CCWGG	2 cut(s)	262, 364
AleI	CACNNNNGTG	1 cut(s)	494
AluBI	AGCT	1 cut(s)	424
AluI	AGCT	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	424
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	2 cut(s)	254, 257
ApoI	RAATTY	2 cut(s)	91, 273
AspS9I	GGNCC	2 cut(s)	266, 286
AsuHPI	GGTGA	3 cut(s)	122, 481, 637
AsuNHI	GCTAGC	1 cut(s)	217
AvaII	GGWCC	2 cut(s)	266, 286
AxyI	CCTNAGG	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	266, 269
BccI	CCATC	1 cut(s)	328
BceAI	ACGGC	2 cut(s)	55, 372
BciT130I	CCWGG	2 cut(s)	264, 366
BcoDI	GTCTC	1 cut(s)	480
BfaI	CTAG	2 cut(s)	218, 327
BfuAI	ACCTGC	1 cut(s)	236
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	3 cut(s)	255, 258, 360
BlpI	GCTNAGC	1 cut(s)	241
BlsI	GCNGC	3 cut(s)	256, 259, 361
Bme1390I	CCNGG	2 cut(s)	264, 366
Bme18I	GGWCC	2 cut(s)	266, 286
BmeRI	GACNNNNNGTC	1 cut(s)	335
BmgT120I	GGNCC	2 cut(s)	266, 286
BmiI	GGNNCC	1 cut(s)	268
BmrFI	CCNGG	2 cut(s)	264, 366
BmrI	ACTGGG	1 cut(s)	641
BmtI	GCTAGC	1 cut(s)	221
BmuI	ACTGGG	1 cut(s)	641
BpmI	CTGGAG	1 cut(s)	367
Bpu1102I	GCTNAGC	1 cut(s)	241
BpuEI	CTTGAG	1 cut(s)	150
BsaJI	CCNNGG	3 cut(s)	289, 364, 620
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	647
Bse21I	CCTNAGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	640
BseBI	CCWGG	2 cut(s)	264, 366
BseDI	CCNNGG	3 cut(s)	289, 364, 620
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	640
BseMII	CTCAG	3 cut(s)	255, 311, 660
BseNI	ACTGG	1 cut(s)	647
BseRI	GAGGAG	3 cut(s)	30, 33, 466
BseX3I	CGGCCG	1 cut(s)	357
BseXI	GCAGC	2 cut(s)	266, 269
Bsh1285I	CGRYCG	1 cut(s)	360
BshFI	GGCC	1 cut(s)	359
BsiEI	CGRYCG	1 cut(s)	360
BslFI	GGGAC	2 cut(s)	123, 252
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	480
BsmFI	GGGAC	2 cut(s)	123, 252
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	76, 126, 230
Bsp1720I	GCTNAGC	1 cut(s)	241
BspACI	CCGC	2 cut(s)	221, 360
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	3 cut(s)	254, 312, 661
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	268
BspMI	ACCTGC	1 cut(s)	236
BspOI	GCTAGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	134
BspQI	GCTCTTC	1 cut(s)	623
BsrDI	GCAATG	1 cut(s)	640
BsrI	ACTGG	1 cut(s)	647
BssECI	CCNNGG	3 cut(s)	289, 364, 620
BssMI	GATC	3 cut(s)	76, 126, 230
BssT1I	CCWWGG	2 cut(s)	289, 620
Bst2UI	CCWGG	2 cut(s)	264, 366
Bst4CI	ACNGT	1 cut(s)	493
Bst6I	CTCTTC	3 cut(s)	36, 458, 623
BstC8I	GCNNGC	1 cut(s)	219
BstDEI	CTNAG	3 cut(s)	241, 320, 669
BstEII	GGTNACC	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	553
BstKTI	GATC	3 cut(s)	79, 129, 233
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	3 cut(s)	76, 126, 230
BstMCI	CGRYCG	1 cut(s)	360
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 311
BstNI	CCWGG	2 cut(s)	264, 366
BstPI	GGTNACC	1 cut(s)	341
BstSCI	CCNGG	2 cut(s)	262, 364
BstV1I	GCAGC	2 cut(s)	266, 269
BstX2I	RGATCY	2 cut(s)	126, 230
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	2 cut(s)	126, 230
BstZI	CGGCCG	1 cut(s)	357
Bsu36I	CCTNAGG	1 cut(s)	320
BsuRI	GGCC	1 cut(s)	359
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	1 cut(s)	553
BveI	ACCTGC	1 cut(s)	236
Cac8I	GCNNGC	1 cut(s)	219
CaiI	CAGNNNCTG	1 cut(s)	424
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	2 cut(s)	266, 286
CseI	GACGC	1 cut(s)	174
CsiI	ACCWGGT	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	12, 534
CviAII	CATG	1 cut(s)	602
CviJI	RGCY	6 cut(s)	70, 119, 240, 359, 424, 559
CviKI_1	RGCY	6 cut(s)	70, 119, 240, 359, 424, 559
CviQI	GTAC	2 cut(s)	12, 534
DdeI	CTNAG	3 cut(s)	241, 320, 669
DpnI	GATC	3 cut(s)	78, 128, 232
DpnII	GATC	3 cut(s)	76, 126, 230
DriI	GACNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	357
EagI	CGGCCG	1 cut(s)	357
Eam1104I	CTCTTC	3 cut(s)	36, 458, 623
Eam1105I	GACNNNNNGTC	1 cut(s)	335
EarI	CTCTTC	3 cut(s)	36, 458, 623
EclXI	CGGCCG	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	289, 620
Eco24I	GRGCYC	1 cut(s)	561
Eco47I	GGWCC	2 cut(s)	266, 286
Eco52I	CGGCCG	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	446
Eco81I	CCTNAGG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	341
EcoRI	GAATTC	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	262, 364
EcoT14I	CCWWGG	2 cut(s)	289, 620
EcoT22I	ATGCAT	1 cut(s)	614
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	2 cut(s)	289, 620
FaeI	CATG	1 cut(s)	605
FaqI	GGGAC	2 cut(s)	123, 252
FatI	CATG	1 cut(s)	601
FauNDI	CATATG	1 cut(s)	594
Fnu4HI	GCNGC	3 cut(s)	255, 258, 360
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	3 cut(s)	255, 258, 360
FspBI	CTAG	2 cut(s)	218, 327
GluI	GCNGC	3 cut(s)	255, 258, 360
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	359
HgaI	GACGC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	605
HinfI	GANTC	2 cut(s)	191, 380
HphI	GGTGA	3 cut(s)	122, 481, 637
Hpy166II	GTNNAC	2 cut(s)	472, 534
Hpy188I	TCNGA	2 cut(s)	190, 670
Hpy188III	TCNNGA	4 cut(s)	65, 88, 384, 602
Hpy8I	GTNNAC	2 cut(s)	472, 534
Hpy99I	CGWCG	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	151, 493, 499
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4V	TGCA	3 cut(s)	227, 418, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 311
HpyF3I	CTNAG	3 cut(s)	241, 320, 669
Hsp92II	CATG	1 cut(s)	605
Kzo9I	GATC	3 cut(s)	76, 126, 230
LguI	GCTCTTC	1 cut(s)	623
Lsp1109I	GCAGC	2 cut(s)	266, 269
MabI	ACCWGGT	1 cut(s)	262
MaeI	CTAG	2 cut(s)	218, 327
MaeIII	GTNAC	2 cut(s)	169, 341
MalI	GATC	3 cut(s)	78, 128, 232
MboI	GATC	3 cut(s)	76, 126, 230
MboII	GAAGA	5 cut(s)	23, 439, 475, 617, 640
MflI	RGATCY	2 cut(s)	126, 230
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	3 cut(s)	91, 151, 273
MlyI	GAGTC	1 cut(s)	374
MmeI	TCCRAC	1 cut(s)	168
Mph1103I	ATGCAT	1 cut(s)	614
MslI	CAYNNNNRTG	1 cut(s)	494
MspR9I	CCNGG	2 cut(s)	264, 366
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	2 cut(s)	264, 366
MwoI	GCNNNNNNNGC	2 cut(s)	251, 311
NdeI	CATATG	1 cut(s)	594
NdeII	GATC	3 cut(s)	76, 126, 230
NheI	GCTAGC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	605
NlaIV	GGNNCC	1 cut(s)	268
NsiI	ATGCAT	1 cut(s)	614
OliI	CACNNNNGTG	1 cut(s)	494
PagI	TCATGA	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	623
PctI	GAATGC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	256, 259, 361
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
PpuMI	RGGWCCY	1 cut(s)	266
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	2 cut(s)	262, 364
PspEI	GGTNACC	1 cut(s)	341
PspGI	CCWGG	2 cut(s)	262, 364
PspN4I	GGNNCC	1 cut(s)	268
PspPI	GGNCC	2 cut(s)	266, 286
PspPPI	RGGWCCY	1 cut(s)	266
PsrI	GAACNNNNNNTAC	2 cut(s)	464, 496
PstNI	CAGNNNCTG	1 cut(s)	424
PsuI	RGATCY	2 cut(s)	126, 230
RsaI	GTAC	2 cut(s)	13, 535
RsaNI	GTAC	2 cut(s)	12, 534
RseI	CAYNNNNRTG	1 cut(s)	494
SapI	GCTCTTC	1 cut(s)	623
SatI	GCNGC	3 cut(s)	255, 258, 360
Sau3AI	GATC	3 cut(s)	76, 126, 230
Sau96I	GGNCC	2 cut(s)	266, 286
SchI	GAGTC	1 cut(s)	374
ScrFI	CCNGG	2 cut(s)	264, 366
SduI	GDGCHC	1 cut(s)	561
SexAI	ACCWGGT	1 cut(s)	262
SinI	GGWCC	2 cut(s)	266, 286
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	3 cut(s)	91, 151, 273
SsiI	CCGC	2 cut(s)	221, 360
SspMI	CTAG	2 cut(s)	218, 327
StyD4I	CCNGG	2 cut(s)	262, 364
StyI	CCWWGG	2 cut(s)	289, 620
TaaI	ACNGT	1 cut(s)	493
TaqI	TCGA	1 cut(s)	461
TasI	AATT	3 cut(s)	91, 151, 273
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	1 cut(s)	191
TseI	GCWGC	2 cut(s)	254, 257
TspDTI	ATGAA	4 cut(s)	266, 537, 590, 618
VpaK11BI	GGWCC	2 cut(s)	266, 286
XapI	RAATTY	2 cut(s)	91, 273
XspI	CTAG	2 cut(s)	218, 327
Zsp2I	ATGCAT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.