Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005226

Physical Location & Seq

Genomic Coordinates Reverse (-)

25193657 .. 25197264

Gene Structure 3608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGCTTTCCAGAAGATCAAGGTTGCCAACCCCATCGTCGAGATGGACGGAGATGAAATGACAAGAGTTTTCTGGAAATCCATTAAGGACAAGCTTATCTTACCATTTGTGGAATTGGACATCAAGTACTTTGACCTTGGCCTTCCTCATCGTGATGCCACTGATGACAAGGTTACTGTTGAAAGTGCTGAGGCTACTCTCAAGTACAATGTAGCAATCAAGTGTGCGACTATTACTCCAGATGAAGCTCGTATGACGGAGTTTAGCTTGAAGAGTATGTGGAGGAGTCCCAATGGGACTATTAGGAATATTTTGAATGGTACTGTTTTCAGAGAACCAATTCTTTGCAAAAACATCCCTCGCCTTATCCCAGGCTGGACAAAGCCGATATGCATTGGAAGACATGCTTTTGGTGATCAGTATCGAGCAACTGATGCAGTCATTAAAGGACCGGGGAAACTGAAATTGGTGTTTGTGCCAGAAGGAAAGGATGAGAAGACAGAGCTAGACGTGTATGACTTTACAGGGGAGGGGGGAGTAGCATTGGCCATGTACAACACCGATGAGTCCATCCGTGCTTTTGCAGAGGCTTCCATGACCACTGCTTATGAGAAAAAGTGGCCTCTTTATCTTAGCACAAAAAATACTATTCTGAAGAAGTATGATGGAAGATTCAAGGACATATTTCAAGAAGTTTATGAAGCTAACTGGAAATCAAAGTTTGAAGCTGCTGGCATATGGTATGAGCATCGTCTCATTGATGATATGGTGGCTTATGCACTTAAAAGTGATGGTGCGTATGTTTGGGCATGCAAGAATTATGATGGAGATGTGCAAAGTGATATGTTAGCTCAAGGGTTTGGATCTCTTGGATTGATGACATCCGTACTGGTGTGCCCAGATGGAAAAACTATTGAAGCCGAAGCTGCCCATGGTACAGTTACTCGGCACTACAGGGTTCACCAGAAGGGAGGCGAAACGAGTACAAACAGCATTGCTTCCATCTTTGCTTGGACAAGAGGGCTTGCACACAGGGCTAAGTTGGATGACAATGCAAGACTTTTGGAGTTCACTCAAAAACTCGAAGAAGCTTGTATTGGGACTGTGGAATCGGGGAAAATGACCAAGGATCTTGCACTAATTCTTCACGGATCCAAGCTGGCTAGGAACCACTACTTGAACACTGAAGAGTTCATTGATGCTGTGGCCAACGAACTGAAAGCTAAGCTTGCTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004448 GO:0004450 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006102 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006739 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0008152 GO:0009117 GO:0009506 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0016491 GO:0016614 GO:0016616 GO:0019362 GO:0019637 GO:0019752 GO:0030054 GO:0034641 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046496 GO:0046686 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051186 GO:0051704 GO:0051707 GO:0055044 GO:0055086 GO:0055114 GO:0071704 GO:0071944 GO:0072350 GO:0072524 GO:0098542 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00020 ko00480 ko00720 ko01100 ko01110 ko01120 ko01130 ko01200 ko01210 ko01230 ko04146 map00020 map00480 map00720 map01100 map01110 map01120 map01130 map01200 map01210 map01230 map04146

Pfam Domains

Protein Families

Iso_dh

Protein Analysis

413

Amino Acids

46.24

Weight (kDa)

6.35

Isoelectric Point (pI)

22.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iso_dh	PF00180	7 - 402	2.8e-82	Isocitrate/isopropylmalate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65930
fragaria_vesca	FvH4_1g27490 FvH4_1g27490 FvH4_1g30530 FvH4_1g30530
malus_domestica	MD09G1276900.v1.1 MD09G1277300.v1.1 MD17G1270700.v1.1
prunus_persica	Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1 Prupe.3G015500_v2.0.a1
pyrus_communis	pycom09g18670 pycom17g26910
rosa_chinensis	RchiOBHm_Chr3g0489041 RchiOBHm_Chr3g0489051
rosa_laevigata	RLG00000022897 RLG00000022898
rosa_multiflora	Rmu_sc0002227.1_g000003 Rmu_sc0011911.1_g000008
rosa_roxburghii	Rroxscaffold_6G00393730
rosa_rugosa	Rorug03G0242800 Rorug03G0242900 Rorug03G0242900
rosa_samantha	Rh3AG291100 Rh3BG327800 Rh3DG324200
rosa_wichuraiana	Rw3G025760 Rw3G025770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	871, 1137, 1146, 1159
AcoI	YGGCCR	2 cut(s)	546, 1206
AcuI	CTGAAG	2 cut(s)	674, 1206
AfaI	GTAC	7 cut(s)	128, 206, 322, 554, 888, 937, 985
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	8 cut(s)	182, 271, 316, 676, 689, 725, 917, 1180
AjiI	CACGTC	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	370
AjuI	GAANNNNNNNTTGG	4 cut(s)	449, 481, 1080, 1112
Alw26I	GTCTC	1 cut(s)	758
AlwI	GGATC	4 cut(s)	871, 1137, 1146, 1159
AoxI	GGCC	4 cut(s)	139, 546, 620, 1206
ApeKI	GCWGC	2 cut(s)	728, 926
Asp700I	GAANNNNTTC	1 cut(s)	339
AspS9I	GGNCC	1 cut(s)	449
AsuC2I	CCSGG	1 cut(s)	453
AsuHPI	GGTGA	2 cut(s)	425, 953
AvaII	GGWCC	1 cut(s)	449
BaeGI	GKGCMC	1 cut(s)	899
BalI	TGGCCA	2 cut(s)	548, 1208
BamHI	GGATCC	1 cut(s)	1151
BbsI	GAAGAC	2 cut(s)	406, 503
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	715, 913
BccI	CCATC	8 cut(s)	37, 41, 578, 659, 785, 818, 896, 1010
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	415
BcnI	CCSGG	1 cut(s)	453
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	3 cut(s)	506, 1164, 1237
BfmI	CTRYAG	1 cut(s)	952
BisI	GCNGC	2 cut(s)	729, 927
BlpI	GCTNAGC	1 cut(s)	1224
BlsI	GCNGC	2 cut(s)	730, 928
BmcAI	AGTACT	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	372, 453
Bme18I	GGWCC	1 cut(s)	449
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	2 cut(s)	1153, 1169
BmrFI	CCNGG	2 cut(s)	372, 453
BmsI	GCATC	4 cut(s)	145, 424, 757, 1189
BpiI	GAAGAC	2 cut(s)	406, 503
BpmI	CTGGAG	1 cut(s)	222
Bpu10I	CCTNAGC	1 cut(s)	189
Bpu1102I	GCTNAGC	1 cut(s)	1224
BpuEI	CTTGAG	2 cut(s)	185, 837
BpuMI	CCSGG	1 cut(s)	453
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	5 cut(s)	136, 370, 452, 931, 1125
BsaXI	ACNNNNNCTCC	2 cut(s)	220, 250
Bse1I	ACTGG	2 cut(s)	713, 894
Bse3DI	GCAATG	1 cut(s)	993
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	5 cut(s)	136, 370, 452, 931, 1125
BseGI	GGATG	5 cut(s)	354, 496, 570, 881, 1051
BseJI	GATNNNNATC	1 cut(s)	420
BseMI	GCAATG	1 cut(s)	993
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	713, 894
BseRI	GAGGAG	1 cut(s)	298
BseSI	GKGCMC	1 cut(s)	899
BseXI	GCAGC	2 cut(s)	715, 913
BshFI	GGCC	4 cut(s)	141, 548, 622, 1208
BsiSI	CCGG	1 cut(s)	452
BslFI	GGGAC	3 cut(s)	273, 310, 1114
BsmAI	GTCTC	1 cut(s)	758
BsmBI	CGTCTC	1 cut(s)	758
BsmFI	GGGAC	3 cut(s)	273, 310, 1114
BsnI	GGCC	4 cut(s)	141, 548, 622, 1208
Bsp1286I	GDGCHC	1 cut(s)	899
Bsp1407I	TGTACA	1 cut(s)	552
Bsp143I	GATC	5 cut(s)	15, 415, 863, 1129, 1151
Bsp1720I	GCTNAGC	1 cut(s)	1224
Bsp19I	CCATGG	1 cut(s)	931
BspANI	GGCC	4 cut(s)	141, 548, 622, 1208
BspCNI	CTCAG	1 cut(s)	181
BspLI	GGNNCC	2 cut(s)	1153, 1169
BspPI	GGATC	4 cut(s)	871, 1137, 1146, 1159
BsrDI	GCAATG	1 cut(s)	993
BsrGI	TGTACA	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	713, 894
BssECI	CCNNGG	5 cut(s)	136, 370, 452, 931, 1125
BssMI	GATC	5 cut(s)	15, 415, 863, 1129, 1151
BssT1I	CCWWGG	3 cut(s)	136, 931, 1125
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	4 cut(s)	178, 325, 940, 1105
Bst6I	CTCTTC	2 cut(s)	266, 1182
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	552
BstC8I	GCNNGC	6 cut(s)	733, 811, 1026, 1161, 1230, 1234
BstDEI	CTNAG	4 cut(s)	189, 632, 1038, 1224
BstDSI	CCRYGG	1 cut(s)	931
BstF5I	GGATG	5 cut(s)	354, 496, 570, 881, 1051
BstKTI	GATC	5 cut(s)	18, 418, 866, 1132, 1154
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	5 cut(s)	15, 415, 863, 1129, 1151
BstMWI	GCNNNNNNNGC	4 cut(s)	434, 926, 1034, 1229
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	2 cut(s)	407, 813
BstSCI	CCNGG	2 cut(s)	370, 451
BstSFI	CTRYAG	1 cut(s)	952
BstSLI	GKGCMC	1 cut(s)	899
BstV1I	GCAGC	2 cut(s)	715, 913
BstV2I	GAAGAC	2 cut(s)	406, 503
BstX2I	RGATCY	3 cut(s)	863, 1129, 1151
BstYI	RGATCY	3 cut(s)	863, 1129, 1151
BsuRI	GGCC	4 cut(s)	141, 548, 622, 1208
BtgI	CCRYGG	1 cut(s)	931
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	5 cut(s)	354, 496, 570, 881, 1051
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	3 cut(s)	159, 600, 1182
Cac8I	GCNNGC	6 cut(s)	733, 811, 1026, 1161, 1230, 1234
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	7 cut(s)	127, 205, 321, 553, 887, 936, 984
CviAII	CATG	5 cut(s)	404, 550, 595, 810, 932
CviQI	GTAC	7 cut(s)	127, 205, 321, 553, 887, 936, 984
DdeI	CTNAG	4 cut(s)	189, 632, 1038, 1224
DpnI	GATC	5 cut(s)	17, 417, 865, 1131, 1153
DpnII	GATC	5 cut(s)	15, 415, 863, 1129, 1151
EaeI	YGGCCR	2 cut(s)	546, 1206
Eam1104I	CTCTTC	2 cut(s)	266, 1182
EarI	CTCTTC	2 cut(s)	266, 1182
Eco130I	CCWWGG	3 cut(s)	136, 931, 1125
Eco47I	GGWCC	1 cut(s)	449
Eco57I	CTGAAG	2 cut(s)	674, 1206
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	3 cut(s)	136, 931, 1125
EcoT22I	ATGCAT	1 cut(s)	395
ErhI	CCWWGG	3 cut(s)	136, 931, 1125
Esp3I	CGTCTC	1 cut(s)	758
FaeI	CATG	5 cut(s)	407, 553, 598, 813, 935
FalI	AAGNNNNNCTT	5 cut(s)	83, 115, 391, 423, 1212
FaqI	GGGAC	3 cut(s)	273, 310, 1114
FatI	CATG	5 cut(s)	403, 549, 594, 809, 931
FauNDI	CATATG	1 cut(s)	737
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	2 cut(s)	729, 927
FokI	GGATG	5 cut(s)	341, 503, 557, 868, 1058
Fsp4HI	GCNGC	2 cut(s)	729, 927
FspBI	CTAG	3 cut(s)	506, 1164, 1237
GluI	GCNGC	2 cut(s)	729, 927
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	4 cut(s)	141, 548, 622, 1208
HapII	CCGG	1 cut(s)	452
Hin1II	CATG	5 cut(s)	407, 553, 598, 813, 935
HindIII	AAGCTT	3 cut(s)	92, 1089, 1226
HinfI	GANTC	4 cut(s)	286, 566, 672, 1109
HpaII	CCGG	1 cut(s)	452
HphI	GGTGA	2 cut(s)	425, 953
Hpy166II	GTNNAC	2 cut(s)	961, 1071
Hpy188I	TCNGA	2 cut(s)	332, 654
Hpy188III	TCNNGA	6 cut(s)	10, 40, 73, 152, 239, 689
Hpy8I	GTNNAC	2 cut(s)	961, 1071
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	3 cut(s)	152, 476, 961
HpyCH4III	ACNGT	4 cut(s)	178, 325, 940, 1105
HpyCH4IV	ACGT	1 cut(s)	510
HpyF10VI	GCNNNNNNNGC	4 cut(s)	434, 926, 1034, 1229
HpyF3I	CTNAG	4 cut(s)	189, 632, 1038, 1224
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	5 cut(s)	407, 553, 598, 813, 935
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	15, 415, 863, 1129, 1151
Lsp1109I	GCAGC	2 cut(s)	715, 913
LweI	GCATC	4 cut(s)	145, 424, 757, 1189
MaeI	CTAG	3 cut(s)	506, 1164, 1237
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	2 cut(s)	172, 940
MalI	GATC	5 cut(s)	17, 417, 865, 1131, 1153
MboI	GATC	5 cut(s)	15, 415, 863, 1129, 1151
MboII	GAAGA	9 cut(s)	25, 283, 411, 508, 667, 681, 1097, 1136, 1199
MflI	RGATCY	3 cut(s)	863, 1129, 1151
MhlI	GDGCHC	1 cut(s)	899
MlsI	TGGCCA	2 cut(s)	548, 1208
MluCI	AATT	5 cut(s)	113, 339, 464, 817, 1140
MluNI	TGGCCA	2 cut(s)	548, 1208
MlyI	GAGTC	2 cut(s)	295, 575
MmeI	TCCRAC	1 cut(s)	1023
MnlI	CCTC	9 cut(s)	156, 184, 276, 369, 523, 580, 633, 965, 1013
Mox20I	TGGCCA	2 cut(s)	548, 1208
Mph1103I	ATGCAT	1 cut(s)	395
MroXI	GAANNNNTTC	1 cut(s)	339
MscI	TGGCCA	2 cut(s)	548, 1208
MseI	TTAA	3 cut(s)	84, 444, 783
MslI	CAYNNNNRTG	1 cut(s)	153
Msp20I	TGGCCA	2 cut(s)	548, 1208
MspI	CCGG	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	372, 453
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	4 cut(s)	434, 926, 1034, 1229
NciI	CCSGG	1 cut(s)	453
NcoI	CCATGG	1 cut(s)	931
NdeI	CATATG	1 cut(s)	737
NdeII	GATC	5 cut(s)	15, 415, 863, 1129, 1151
NlaIII	CATG	5 cut(s)	407, 553, 598, 813, 935
NlaIV	GGNNCC	2 cut(s)	1153, 1169
NmeAIII	GCCGAG	1 cut(s)	925
NsiI	ATGCAT	1 cut(s)	395
NspI	RCATGY	2 cut(s)	407, 813
PaeI	GCATGC	1 cut(s)	813
PdmI	GAANNNNTTC	1 cut(s)	339
PfeI	GAWTC	2 cut(s)	672, 1109
PkrI	GCNGC	2 cut(s)	730, 928
PleI	GAGTC	2 cut(s)	294, 574
PpsI	GAGTC	2 cut(s)	294, 574
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	1153, 1169
PspPI	GGNCC	1 cut(s)	449
PsuI	RGATCY	3 cut(s)	863, 1129, 1151
RsaI	GTAC	7 cut(s)	128, 206, 322, 554, 888, 937, 985
RsaNI	GTAC	7 cut(s)	127, 205, 321, 553, 887, 936, 984
RseI	CAYNNNNRTG	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	84, 444, 783
SatI	GCNGC	2 cut(s)	729, 927
Sau3AI	GATC	5 cut(s)	15, 415, 863, 1129, 1151
Sau96I	GGNCC	1 cut(s)	449
ScaI	AGTACT	1 cut(s)	128
SchI	GAGTC	2 cut(s)	295, 575
ScrFI	CCNGG	2 cut(s)	372, 453
SduI	GDGCHC	1 cut(s)	899
SfaNI	GCATC	4 cut(s)	145, 424, 757, 1189
SfcI	CTRYAG	1 cut(s)	952
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	2 cut(s)	200, 852
SmoI	CTYRAG	2 cut(s)	200, 852
SphI	GCATGC	1 cut(s)	813
Sse9I	AATT	5 cut(s)	113, 339, 464, 817, 1140
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	3 cut(s)	506, 1164, 1237
StyD4I	CCNGG	2 cut(s)	370, 451
StyI	CCWWGG	3 cut(s)	136, 931, 1125
TaaI	ACNGT	4 cut(s)	178, 325, 940, 1105
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	3 cut(s)	39, 424, 1083
TasI	AATT	5 cut(s)	113, 339, 464, 817, 1140
TatI	WGTACW	4 cut(s)	126, 204, 552, 983
TfiI	GAWTC	2 cut(s)	672, 1109
Tru1I	TTAA	3 cut(s)	84, 444, 783
Tru9I	TTAA	3 cut(s)	84, 444, 783
TscAI	CASTG	3 cut(s)	166, 607, 1189
TseI	GCWGC	2 cut(s)	728, 926
TspDTI	ATGAA	4 cut(s)	69, 258, 714, 1183
TspGWI	ACGGA	5 cut(s)	63, 272, 563, 874, 1164
TspRI	CASTG	3 cut(s)	166, 607, 1189
VpaK11BI	GGWCC	1 cut(s)	449
XceI	RCATGY	2 cut(s)	407, 813
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	339
XspI	CTAG	3 cut(s)	506, 1164, 1237
ZrmI	AGTACT	1 cut(s)	128
Zsp2I	ATGCAT	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.