Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_290

Orthogroup ID

OG0004616

Physical Location & Seq

Genomic Coordinates Forward (+)

157107 .. 161710

Gene Structure 4604 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

ATGTCGACTACTACGACTCTTCTGACGACGATTTCTTTCCTTACTCCACCTCTAACAGCACCATCACCACCACAACCACTAGTAATGCTGTTGGCGTTGGTGATCACGACGTGTACGTGGGCACCACTCACTCCCAGAGGCTGGACCAAAGCCTCTGCATGGAGGCTGGTGATGATCCTGATGGCAACAGAGAATGCCAGCCGTTGGCCGAATTTATTGGCAGCGGCGGTGCCTGGTCGTCCCCCCTGCTTGGAGCTGAGACCCCACCCTCTCAGGGAAACCCAGGTCGGCAGGTTCCTCAGGACCATTGCCTGCACCAATACCCAGCTGTGGGCTGGCCAGGAGGGCGGAGTCAGGGTCTGGAATTTGAAGGGCGTCTTTGAACCTGGCTTTGGTATTGGTGGCAGAGTAATGAGGGGTGATGAGGATGCCGCCCCATACTATGAATCCGCCAACACCTCTCCCACCCATTGCCTCATGGTTGATACCGGCAATCGCTTGATTTGGACTGGCCATAAGGATGGTAAGATCAGATCTTGGAAGATGGATCAGTCTTTGGATGCTTCTACTCCTTTTAAGGAAGGTCTTTCCTGGCAGGCCCACCGCGCTCCTGTTCTCGCCATGGTTTTCACTGCTTACGGTGATATGTGGTCAGGTTCCGAGGGTGGTGTTATTAAAATCTGGCCATGGGAAACCATAGAAAAATCTCTCTCTCTAAAACCAGAGGAAAGGCATATGGCAGCTTTACTGGTGGAGAGGTCAGGCATTGAACTGAGGAGCCAAGTTACCGTGAATGGCGTCTGTAGTATATCTTCTCAAGATGTCAAGTGTTTACTATCTGATAATTTTAGGGCTAAAGTTTGGTGTGCCGGATCTATGTCCTTCTCCTTGTGGGATGCTCGTACAAGAGAGCTTGTGAAAGTCTTTAATGTAGAAGGTCAGATGGAGAATCGAGTTGACATGTCAGCAGTGCAGCAAGATCAAGCAGTAGAAGATGAGATGAAGGTAAAATTTGTTTCAACATCGAAAAAGGAGAAATCCGGGGGCTTTTTACAACGGTCGCGTAATGCTATAATGGGAGCTGCAGATGCTGTTCGTCGGGTTGCAACAAGAGGGGCAGGGGCATTTGTAGAAGAATCCAAGAAGACAGAAGCGCTAGTGCTCACTGCGGATGGCATGATATGGAGTGGATGCACAAATGGTTTACTGGTTCAGTGGGATGGAAATGGTAACCGTGTGCAAGATTTTAATCACCATTCTTCTGGTGTCCAATGCTTTTGCACTATCGGAACACGAATATATGTAGGCTATGTGAGTGGCATGATTCAGGTGTTGGATCTTGAGGGAAATCTGATTGCAGGATGGGTTGCACACAGTAGTCCAGTGATAAAACTGGCGGTTGGAACTGGTTTTGTTTATAGCTTGGCCACCCATGGTGGTATTCGCGGATGGAACATCAAATCTCCAGGACCTACTGACAACTTGATACGTACAGAATTGGCTTTTAGTAGGCACATGGAATGTTGGTCAAGGAAGAGCATCTCAGGATGCACTAATATCATGGTTAGGCTCTGCTGTGCCAGATGTTGGCATTGTAGTTGTCGGGTTGCAAGAAGTAGAAATGGGCGCAGGCTTTCTTGCAATGTCTGCTGCAAAAGAAACTACAAAATCTCTACTCGTGTAGGGCTTGAAGGGAGTTCCGTTGGTAACTGGTGGCTTGATAACATAGGAAAGGCCTTAGAAGAAGGAAAAACTTTCGAACGCATGGGTTCTAGGCAGCTCGCAGGCTTGCTCATATCTCTTTGGGTAAGAAAGAATCTCAGAAAACATGTCGGGGATATTGATGCTGGAGCAGTTCCCTGTGGCTTTGGTCGTGCTATTGGTAACAAGGGGGGTGTTGGTCTGAGAATCCGAGTCTATGATCGGATAATGTGCTTTGTGAACTGTCATTTGGCTGCACATTTGGAAGCTGTCAATCGCCGTAATGCTGATCTTGATCACATTTATCGTAATATGGTCTTCAACCGGTCGTCTCTACTTAACACAGCAGCTGGTATGCTACCATACCTGTTTTTGTCTTGCTCCCTTGCCTTCTCTGCCTATTTATTTTGGCTGCTTTATTCTTCTGGCTTGCCATGGGTCCTCTCTCTTGCAGCTGGTGTCTCAACTTCTGTTAACATGGCTCGGGCTCCAAATGCTGTCAGTAGCAACACTGAAGATGTAAGGCCCGAATTAGCAGAAGCAGATATGGTTGTTTTTCTCGGTGATTTCAATTATCGGCTTTTTGGTATATCTTATGATGAAGCAAGGGACTTCGTTTCGCAAAGATGCTTTGATTGGCTCAGAGAAAAAGATCGAGCTCAGAGCAGAGATGAAATCCCTCCAACATACAAGTTTGAAAAGCACCAAGCAGGCTTAGCAGACGATTCTGGTGAGAAGAAACGTATTCCTGCATGGTGTGATAGAATAATATATCGTGACAATCGACCATCACCAGTTGCTGAGTGCAGTTTAGAGTGCCCTGTAGTCTCGTCAATTATACAGTACGAGGCATGCATGGATGTGACTGACAGTGATCACAAACCTGTCCGGTGTAAACTAAGTTTACAAATTGCCCACGTTGATAGATCAGTAAGGAGAAAGGAGTTTGGAGAAATTATAAAGTCCAATCAGAATATCAGGTCTATGCTTGAAGAATCAAATTATGTTCCAGAAACTATTTTGAACACCAACAACATAATCCTTCAAAATCAGGACACGTCCATTTTGCGTATCACTAATAAATGTGTAAAGGATACGGCCGTATTTAAAATCATCTGTGAAGGTCAGTCCACTGTCAAGGAGGATGGGGAAGAGCCTGACTATCGCCCGAGAGGTGCCCATGGGTTTCCTCGATGGCTTGAGATCACACCAGCAACGGGCATGATCAAACCTGAAGAGTCTGTGGAGGTCTCAGTTCATCATGAAGAGTTTCATACCTTGGAAGAATTTGTTGATGGCATCCCTCAAAATTGGTGGTGCGAAGACACCCGCGACAAGGAAGTGATTTTAATGTTGAGTGTCCAAGGCAGTTGCTCAGCTGAAACATATAGTCACAGAGTTCGTGTACGGCATTGCTTCTCAGCCAAGACAGTCCGCATGGACTCAAAATCCAACAGCTCTAGGAAAGGCCAGGGAAGTCCAGTTCACAGGTCTGAAGTTCGGCAACTTAACATACCAAGCCAAATCAACTTGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0006066 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0007584 GO:0008150 GO:0008152 GO:0009056 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009611 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009719 GO:0009725 GO:0009737 GO:0009743 GO:0009756 GO:0009846 GO:0009856 GO:0009888 GO:0009987 GO:0009991 GO:0010033 GO:0010087 GO:0010182 GO:0010252 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0019751 GO:0022414 GO:0022622 GO:0023052 GO:0031667 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043647 GO:0044237 GO:0044238 GO:0044262 GO:0044281 GO:0044282 GO:0044424 GO:0044464 GO:0044706 GO:0046030 GO:0046164 GO:0046174 GO:0046434 GO:0046838 GO:0046855 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051716 GO:0052658 GO:0052745 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071322 GO:0071545 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901615 GO:1901616 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04070 map00562 map01100 map04070

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

1080

Amino Acids

120.49

Weight (kDa)

8.74

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_IP5PC_F	PF23754	91 - 484	5.8e-228	IP5P C-F beta-propeller
Exo_endo_phos2	PF22669	570 - 864	7.2e-40	Endonuclease/Exonuclease/phosphatase family 2
Ig-like_IP5PC_F	PF23755	903 - 1039	1.8e-73	IP5P C-F Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004616)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05630 AT1G05630 AT1G05630 AT2G31830 AT2G31830 AT2G31830 AT2G43900 AT2G43900
fragaria_vesca	FvH4_5g18650 FvH4_5g18650 FvH4_5g18650 FvH4_5g18650
malus_domestica	MD00G1087600.v1.1 MD15G1143600.v1.1
prunus_persica	Prupe.7G062000_v2.0.a1
pyrus_communis	pycom15g12950 pycom15g12960 pycom15g12970 pycom290g00230
rosa_chinensis	RchiOBHm_Chr7g0176851
rosa_laevigata	RLG00000005579
rosa_multiflora	Rmu_co8238923.1_g000001 Rmu_sc0005310.1_g000054 Rmu_sc0027976.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276340
rosa_rugosa	Rorug06G0401200
rosa_samantha	Rh7AG000500 Rh7BG000900 Rh7CG000500 Rh7DG000700
rosa_wichuraiana	Rw7G000040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2660
Acc36I	ACCTGC	1 cut(s)	282
AccB1I	GGYRCC	3 cut(s)	121, 229, 2876
AccB7I	CCANNNNNTGG	3 cut(s)	141, 204, 1587
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	4 cut(s)	606, 1063, 1446, 3033
AclWI	GGATC	4 cut(s)	169, 555, 880, 1344
AcoI	YGGCCR	6 cut(s)	206, 337, 511, 683, 1425, 2799
AcsI	RAATTY	4 cut(s)	211, 364, 1010, 2987
AcuI	CTGAAG	3 cut(s)	2235, 2955, 3216
AcyI	GRCGYC	2 cut(s)	375, 798
AdeI	CACNNNGTG	1 cut(s)	111
AfaI	GTAC	5 cut(s)	115, 904, 1492, 2546, 3108
AfeI	AGCGCT	1 cut(s)	1155
AflIII	ACRYGT	4 cut(s)	110, 960, 1828, 2757
AgeI	ACCGGT	1 cut(s)	2025
AhlI	ACTAGT	1 cut(s)	79
AjiI	CACGTC	2 cut(s)	111, 2760
AjnI	CCWGG	7 cut(s)	232, 282, 339, 385, 590, 1465, 3171
AjuI	GAANNNNNNNTTGG	4 cut(s)	375, 407, 1934, 1966
AloI	GAACNNNNNNTCC	2 cut(s)	3168, 3200
Alw21I	GWGCWC	2 cut(s)	1164, 2362
Alw26I	GTCTC	5 cut(s)	253, 2037, 2167, 2533, 2956
AlwI	GGATC	4 cut(s)	169, 555, 880, 1344
AlwNI	CAGNNNCTG	5 cut(s)	141, 360, 1091, 2051, 2501
Ama87I	CYCGRG	2 cut(s)	2184, 2869
Aor51HI	AGCGCT	1 cut(s)	1155
ApoI	RAATTY	4 cut(s)	211, 364, 1010, 2987
AsiGI	ACCGGT	1 cut(s)	2025
Asp700I	GAANNNNTTC	1 cut(s)	2970
AspLEI	GCGC	3 cut(s)	608, 1156, 1629
AspS9I	GGNCC	6 cut(s)	144, 303, 598, 1469, 2140, 2226
AsuC2I	CCSGG	1 cut(s)	1042
AsuHPI	GGTGA	9 cut(s)	57, 112, 181, 431, 653, 1244, 2276, 2444, 2484
AsuII	TTCGAA	1 cut(s)	1758
AvaI	CYCGRG	2 cut(s)	2184, 2869
AvaII	GGWCC	4 cut(s)	144, 303, 1469, 2140
AxyI	CCTNAGG	1 cut(s)	299
BaeGI	GKGCMC	3 cut(s)	124, 2522, 2881
BaeI	ACNNNNGTAYC	2 cut(s)	2787, 2820
BalI	TGGCCA	4 cut(s)	339, 513, 685, 1427
BanI	GGYRCC	3 cut(s)	121, 229, 2876
BanII	GRGCYC	2 cut(s)	2191, 2362
BarI	GAAGNNNNNNTAC	2 cut(s)	796, 828
BauI	CACGAG	1 cut(s)	1677
BbsI	GAAGAC	3 cut(s)	1151, 2011, 3030
Bbv12I	GWGCWC	2 cut(s)	1164, 2362
BceAI	ACGGC	5 cut(s)	186, 1965, 2786, 2814, 3125
BciT130I	CCWGG	7 cut(s)	234, 284, 341, 387, 592, 1467, 3173
BciVI	GTATCC	1 cut(s)	2788
BclI	TGATCA	4 cut(s)	102, 1996, 2575, 2925
BcnI	CCSGG	1 cut(s)	1042
BcoDI	GTCTC	5 cut(s)	253, 2037, 2167, 2533, 2956
BcuI	ACTAGT	1 cut(s)	79
BfaI	CTAG	4 cut(s)	80, 1157, 1773, 3162
BfmI	CTRYAG	3 cut(s)	802, 1083, 2523
BfoI	RGCGCY	1 cut(s)	1157
BfuAI	ACCTGC	1 cut(s)	282
BfuI	GTATCC	1 cut(s)	2788
BglI	GCCNNNNNGGC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	533
BlpI	GCTNAGC	2 cut(s)	2416, 3076
Bme1390I	CCNGG	8 cut(s)	234, 284, 341, 387, 592, 1042, 1467, 3173
Bme18I	GGWCC	4 cut(s)	144, 303, 1469, 2140
BmeT110I	CYCGRG	2 cut(s)	2184, 2869
BmgBI	CACGTC	2 cut(s)	111, 2760
BmgT120I	GGNCC	6 cut(s)	144, 303, 598, 1469, 2140, 2226
BmiI	GGNNCC	8 cut(s)	123, 231, 296, 658, 779, 2141, 2190, 2878
BmrFI	CCNGG	8 cut(s)	234, 284, 341, 387, 592, 1042, 1467, 3173
BpiI	GAAGAC	3 cut(s)	1151, 2011, 3030
BpmI	CTGGAG	2 cut(s)	1449, 1869
Bpu1102I	GCTNAGC	2 cut(s)	2416, 3076
Bpu14I	TTCGAA	1 cut(s)	1758
BpuEI	CTTGAG	3 cut(s)	801, 1361, 2921
BpuMI	CCSGG	1 cut(s)	1042
BsaAI	YACGTR	2 cut(s)	117, 1490
BsaBI	GATNNNNATC	2 cut(s)	1248, 1995
BsaHI	GRCGYC	2 cut(s)	375, 798
BsaI	GGTCTC	2 cut(s)	253, 2956
BsaWI	WCCGGW	2 cut(s)	2025, 2589
BsaXI	ACNNNNNCTCC	2 cut(s)	342, 372
Bse118I	RCCGGY	2 cut(s)	488, 2025
Bse1I	ACTGG	9 cut(s)	514, 753, 1212, 1382, 1398, 1411, 1715, 2495, 3182
Bse21I	CCTNAGG	1 cut(s)	299
Bse3DI	GCAATG	4 cut(s)	306, 469, 1648, 3112
Bse8I	GATNNNNATC	2 cut(s)	1248, 1995
BseBI	CCWGG	7 cut(s)	234, 284, 341, 387, 592, 1467, 3173
BseJI	GATNNNNATC	2 cut(s)	1248, 1995
BseMI	GCAATG	4 cut(s)	306, 469, 1648, 3112
BseNI	ACTGG	9 cut(s)	514, 753, 1212, 1382, 1398, 1411, 1715, 2495, 3182
BseRI	GAGGAG	1 cut(s)	790
BseSI	GKGCMC	3 cut(s)	124, 2522, 2881
BseX3I	CGGCCG	1 cut(s)	2799
BseYI	CCCAGC	1 cut(s)	324
BsgI	GTGCAG	4 cut(s)	298, 992, 1941, 2527
Bsh1236I	CGCG	4 cut(s)	606, 1063, 1446, 3033
Bsh1285I	CGRYCG	3 cut(s)	1061, 2030, 2802
BshNI	GGYRCC	3 cut(s)	121, 229, 2876
BshTI	ACCGGT	1 cut(s)	2025
BsiEI	CGRYCG	3 cut(s)	1061, 2030, 2802
BsiHKAI	GWGCWC	2 cut(s)	1164, 2362
BsiHKCI	CYCGRG	2 cut(s)	2184, 2869
BsiSI	CCGG	5 cut(s)	489, 870, 1041, 2026, 2590
BslFI	GGGAC	2 cut(s)	225, 2324
BsmAI	GTCTC	5 cut(s)	253, 2037, 2167, 2533, 2956
BsmBI	CGTCTC	1 cut(s)	2037
BsmFI	GGGAC	2 cut(s)	225, 2324
BsmI	GAATGC	1 cut(s)	199
Bso31I	GGTCTC	2 cut(s)	253, 2956
BsoBI	CYCGRG	2 cut(s)	2184, 2869
Bsp119I	TTCGAA	1 cut(s)	1758
Bsp1286I	GDGCHC	6 cut(s)	124, 1164, 2191, 2362, 2522, 2881
Bsp1720I	GCTNAGC	2 cut(s)	2416, 3076
Bsp19I	CCATGG	5 cut(s)	621, 686, 1432, 2135, 2881
BspFNI	CGCG	4 cut(s)	606, 1063, 1446, 3033
BspHI	TCATGA	1 cut(s)	2962
BspLI	GGNNCC	8 cut(s)	123, 231, 296, 658, 779, 2141, 2190, 2878
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	4 cut(s)	169, 555, 880, 1344
BspQI	GCTCTTC	2 cut(s)	1529, 2847
BspT104I	TTCGAA	1 cut(s)	1758
BspT107I	GGYRCC	3 cut(s)	121, 229, 2876
BspTNI	GGTCTC	2 cut(s)	253, 2956
BsrDI	GCAATG	4 cut(s)	306, 469, 1648, 3112
BsrFI	RCCGGY	2 cut(s)	488, 2025
BsrI	ACTGG	9 cut(s)	514, 753, 1212, 1382, 1398, 1411, 1715, 2495, 3182
BssAI	RCCGGY	2 cut(s)	488, 2025
BssNI	GRCGYC	2 cut(s)	375, 798
BssSI	CACGAG	1 cut(s)	1677
BssT1I	CCWWGG	7 cut(s)	621, 686, 1432, 2135, 2881, 2979, 3064
Bst2BI	CACGAG	1 cut(s)	1677
Bst2UI	CCWGG	7 cut(s)	234, 284, 341, 387, 592, 1467, 3173
Bst6I	CTCTTC	5 cut(s)	24, 1529, 2847, 2931, 2961
BstACI	GRCGYC	2 cut(s)	375, 798
BstAPI	GCANNNNNTGC	1 cut(s)	1647
BstBAI	YACGTR	2 cut(s)	117, 1490
BstBI	TTCGAA	1 cut(s)	1758
BstDSI	CCRYGG	5 cut(s)	621, 686, 1432, 2135, 2881
BstEII	GGTNACC	1 cut(s)	1229
BstFNI	CGCG	4 cut(s)	606, 1063, 1446, 3033
BstH2I	RGCGCY	1 cut(s)	1157
BstHHI	GCGC	3 cut(s)	608, 1156, 1629
BstMAI	GTCTC	5 cut(s)	253, 2037, 2167, 2533, 2956
BstMCI	CGRYCG	3 cut(s)	1061, 2030, 2802
BstMWI	GCNNNNNNNGC	7 cut(s)	345, 605, 1088, 1647, 2096, 2195, 2417
BstNI	CCWGG	7 cut(s)	234, 284, 341, 387, 592, 1467, 3173
BstNSI	RCATGY	3 cut(s)	964, 1832, 2556
BstPI	GGTNACC	1 cut(s)	1229
BstSCI	CCNGG	8 cut(s)	232, 282, 339, 385, 590, 1040, 1465, 3171
BstSFI	CTRYAG	3 cut(s)	802, 1083, 2523
BstSLI	GKGCMC	3 cut(s)	124, 2522, 2881
BstSNI	TACGTA	1 cut(s)	1490
BstUI	CGCG	4 cut(s)	606, 1063, 1446, 3033
BstV2I	GAAGAC	3 cut(s)	1151, 2011, 3030
BstX2I	RGATCY	3 cut(s)	533, 872, 1336
BstXI	CCANNNNNNTGG	2 cut(s)	521, 1262
BstYI	RGATCY	3 cut(s)	533, 872, 1336
BstZI	CGGCCG	1 cut(s)	2799
Bsu36I	CCTNAGG	1 cut(s)	299
BsuI	GTATCC	1 cut(s)	2788
BtgI	CCRYGG	5 cut(s)	621, 686, 1432, 2135, 2881
BtrI	CACGTC	2 cut(s)	111, 2760
BtsI	GCAGTG	3 cut(s)	630, 975, 1164
BtsIMutI	CAGTG	8 cut(s)	630, 975, 1164, 1220, 1389, 2211, 2578, 2832
BveI	ACCTGC	1 cut(s)	282
CaiI	CAGNNNCTG	5 cut(s)	141, 360, 1091, 2051, 2501
CciI	TCATGA	1 cut(s)	2962
CfoI	GCGC	3 cut(s)	608, 1156, 1629
Cfr10I	RCCGGY	2 cut(s)	488, 2025
Cfr13I	GGNCC	6 cut(s)	144, 303, 598, 1469, 2140, 2226
CseI	GACGC	2 cut(s)	364, 787
Csp6I	GTAC	5 cut(s)	114, 903, 1491, 2545, 3107
CspAI	ACCGGT	1 cut(s)	2025
CspCI	CAANNNNNGTGG	2 cut(s)	2996, 3031
CviQI	GTAC	5 cut(s)	114, 903, 1491, 2545, 3107
DraI	TTTAAA	1 cut(s)	2809
DraIII	CACNNNGTG	1 cut(s)	111
EaeI	YGGCCR	6 cut(s)	206, 337, 511, 683, 1425, 2799
EagI	CGGCCG	1 cut(s)	2799
Eam1104I	CTCTTC	5 cut(s)	24, 1529, 2847, 2931, 2961
EarI	CTCTTC	5 cut(s)	24, 1529, 2847, 2931, 2961
EciI	GGCGGA	2 cut(s)	363, 439
Ecl136II	GAGCTC	1 cut(s)	2360
EclXI	CGGCCG	1 cut(s)	2799
Eco105I	TACGTA	1 cut(s)	1490
Eco130I	CCWWGG	7 cut(s)	621, 686, 1432, 2135, 2881, 2979, 3064
Eco147I	AGGCCT	1 cut(s)	1736
Eco24I	GRGCYC	2 cut(s)	2191, 2362
Eco31I	GGTCTC	2 cut(s)	253, 2956
Eco47I	GGWCC	4 cut(s)	144, 303, 1469, 2140
Eco47III	AGCGCT	1 cut(s)	1155
Eco52I	CGGCCG	1 cut(s)	2799
Eco53kI	GAGCTC	1 cut(s)	2360
Eco57I	CTGAAG	3 cut(s)	2235, 2955, 3216
Eco81I	CCTNAGG	1 cut(s)	299
Eco88I	CYCGRG	2 cut(s)	2184, 2869
Eco91I	GGTNACC	1 cut(s)	1229
EcoICRI	GAGCTC	1 cut(s)	2360
EcoO109I	RGGNCCY	2 cut(s)	1469, 2140
EcoO65I	GGTNACC	1 cut(s)	1229
EcoRII	CCWGG	7 cut(s)	232, 282, 339, 385, 590, 1465, 3171
EcoT14I	CCWWGG	7 cut(s)	621, 686, 1432, 2135, 2881, 2979, 3064
EcoT22I	ATGCAT	1 cut(s)	2558
EcoT38I	GRGCYC	2 cut(s)	2191, 2362
ErhI	CCWWGG	7 cut(s)	621, 686, 1432, 2135, 2881, 2979, 3064
Esp3I	CGTCTC	1 cut(s)	2037
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	2 cut(s)	225, 2324
FauI	CCCGC	1 cut(s)	3038
FauNDI	CATATG	1 cut(s)	735
FbaI	TGATCA	4 cut(s)	102, 1996, 2575, 2925
FblI	GTMKAC	1 cut(s)	5
FriOI	GRGCYC	2 cut(s)	2191, 2362
FspBI	CTAG	4 cut(s)	80, 1157, 1773, 3162
GlaI	GCGC	3 cut(s)	607, 1155, 1628
GsaI	CCCAGC	1 cut(s)	328
GsuI	CTGGAG	2 cut(s)	1449, 1869
HaeII	RGCGCY	1 cut(s)	1157
HapII	CCGG	5 cut(s)	489, 870, 1041, 2026, 2590
HgaI	GACGC	2 cut(s)	364, 787
HhaI	GCGC	3 cut(s)	608, 1156, 1629
Hin1I	GRCGYC	2 cut(s)	375, 798
Hin6I	GCGC	3 cut(s)	606, 1154, 1627
HinP1I	GCGC	3 cut(s)	606, 1154, 1627
HincII	GTYRAC	3 cut(s)	6, 958, 2176
HindII	GTYRAC	3 cut(s)	6, 958, 2176
HpaI	GTTAAC	1 cut(s)	2176
HpaII	CCGG	5 cut(s)	489, 870, 1041, 2026, 2590
HphI	GGTGA	9 cut(s)	57, 112, 181, 431, 653, 1244, 2276, 2444, 2484
Hpy99I	CGWCG	3 cut(s)	31, 112, 1101
HpyCH4IV	ACGT	6 cut(s)	110, 116, 1489, 2443, 2619, 2759
HpyF10VI	GCNNNNNNNGC	7 cut(s)	345, 605, 1088, 1647, 2096, 2195, 2417
HpySE526I	ACGT	6 cut(s)	110, 116, 1489, 2443, 2619, 2759
Hsp92I	GRCGYC	2 cut(s)	375, 798
HspAI	GCGC	3 cut(s)	606, 1154, 1627
Ksp22I	TGATCA	4 cut(s)	102, 1996, 2575, 2925
KspAI	GTTAAC	1 cut(s)	2176
LguI	GCTCTTC	2 cut(s)	1529, 2847
LmnI	GCTCC	7 cut(s)	253, 613, 777, 1079, 1850, 2087, 2194
MaeI	CTAG	4 cut(s)	80, 1157, 1773, 3162
MaeII	ACGT	6 cut(s)	110, 116, 1489, 2443, 2619, 2759
MaeIII	GTNAC	7 cut(s)	784, 1229, 1706, 1883, 2477, 2563, 3092
MflI	RGATCY	3 cut(s)	533, 872, 1336
MhlI	GDGCHC	6 cut(s)	124, 1164, 2191, 2362, 2522, 2881
MlsI	TGGCCA	4 cut(s)	339, 513, 685, 1427
MluNI	TGGCCA	4 cut(s)	339, 513, 685, 1427
MlyI	GAGTC	5 cut(s)	10, 360, 1923, 2948, 3137
MmeI	TCCRAC	4 cut(s)	1314, 1381, 2408, 3177
Mox20I	TGGCCA	4 cut(s)	339, 513, 685, 1427
Mph1103I	ATGCAT	1 cut(s)	2558
MroXI	GAANNNNTTC	1 cut(s)	2970
MscI	TGGCCA	4 cut(s)	339, 513, 685, 1427
MseI	TTAA	9 cut(s)	576, 675, 927, 1248, 2040, 2175, 2808, 3050, 3210
MslI	CAYNNNNRTG	2 cut(s)	519, 2561
Msp20I	TGGCCA	4 cut(s)	339, 513, 685, 1427
MspA1I	CMGCKG	5 cut(s)	224, 328, 2051, 2156, 3080
MspI	CCGG	5 cut(s)	489, 870, 1041, 2026, 2590
MspR9I	CCNGG	8 cut(s)	234, 284, 341, 387, 592, 1042, 1467, 3173
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	7 cut(s)	234, 284, 341, 387, 592, 1467, 3173
MvnI	CGCG	4 cut(s)	606, 1063, 1446, 3033
MwoI	GCNNNNNNNGC	7 cut(s)	345, 605, 1088, 1647, 2096, 2195, 2417
NciI	CCSGG	1 cut(s)	1042
NcoI	CCATGG	5 cut(s)	621, 686, 1432, 2135, 2881
NdeI	CATATG	1 cut(s)	735
NlaIV	GGNNCC	8 cut(s)	123, 231, 296, 658, 779, 2141, 2190, 2878
NmuCI	GTSAC	3 cut(s)	2477, 2563, 3092
NsiI	ATGCAT	1 cut(s)	2558
NspI	RCATGY	3 cut(s)	964, 1832, 2556
NspV	TTCGAA	1 cut(s)	1758
PaeI	GCATGC	1 cut(s)	2556
PagI	TCATGA	1 cut(s)	2962
PceI	AGGCCT	1 cut(s)	1736
PciI	ACATGT	2 cut(s)	960, 1828
PciSI	GCTCTTC	2 cut(s)	1529, 2847
PcsI	WCGNNNNNNNCGW	3 cut(s)	11, 113, 2482
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	1 cut(s)	2970
PfeI	GAWTC	8 cut(s)	446, 949, 1136, 1324, 1816, 1908, 2426, 2696
PflMI	CCANNNNNTGG	3 cut(s)	141, 204, 1587
PfoI	TCCNGGA	1 cut(s)	1465
PinAI	ACCGGT	1 cut(s)	2025
PleI	GAGTC	5 cut(s)	10, 359, 1922, 2947, 3137
PpsI	GAGTC	5 cut(s)	10, 359, 1922, 2947, 3137
Ppu21I	YACGTR	2 cut(s)	117, 1490
PpuMI	RGGWCCY	2 cut(s)	1469, 2140
PscI	ACATGT	2 cut(s)	960, 1828
PsiI	TTATAA	1 cut(s)	2660
Psp124BI	GAGCTC	1 cut(s)	2362
Psp5II	RGGWCCY	2 cut(s)	1469, 2140
Psp6I	CCWGG	7 cut(s)	232, 282, 339, 385, 590, 1465, 3171
PspEI	GGTNACC	1 cut(s)	1229
PspFI	CCCAGC	1 cut(s)	324
PspGI	CCWGG	7 cut(s)	232, 282, 339, 385, 590, 1465, 3171
PspN4I	GGNNCC	8 cut(s)	123, 231, 296, 658, 779, 2141, 2190, 2878
PspPI	GGNCC	6 cut(s)	144, 303, 598, 1469, 2140, 2226
PspPPI	RGGWCCY	2 cut(s)	1469, 2140
PstI	CTGCAG	1 cut(s)	1087
PstNI	CAGNNNCTG	5 cut(s)	141, 360, 1091, 2051, 2501
PsuI	RGATCY	3 cut(s)	533, 872, 1336
PvuII	CAGCTG	4 cut(s)	328, 2051, 2156, 3080
RsaI	GTAC	5 cut(s)	115, 904, 1492, 2546, 3108
RsaNI	GTAC	5 cut(s)	114, 903, 1491, 2545, 3107
RseI	CAYNNNNRTG	2 cut(s)	519, 2561
SacI	GAGCTC	1 cut(s)	2362
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	2 cut(s)	1529, 2847
SaqAI	TTAA	9 cut(s)	576, 675, 927, 1248, 2040, 2175, 2808, 3050, 3210
Sau96I	GGNCC	6 cut(s)	144, 303, 598, 1469, 2140, 2226
SchI	GAGTC	5 cut(s)	10, 360, 1923, 2948, 3137
ScrFI	CCNGG	8 cut(s)	234, 284, 341, 387, 592, 1042, 1467, 3173
SduI	GDGCHC	6 cut(s)	124, 1164, 2191, 2362, 2522, 2881
SfcI	CTRYAG	3 cut(s)	802, 1083, 2523
SfuI	TTCGAA	1 cut(s)	1758
SinI	GGWCC	4 cut(s)	144, 303, 1469, 2140
SmiMI	CAYNNNNRTG	2 cut(s)	519, 2561
SmlI	CTYRAG	3 cut(s)	816, 1340, 2900
SmoI	CTYRAG	3 cut(s)	816, 1340, 2900
SnaBI	TACGTA	1 cut(s)	1490
SpeI	ACTAGT	1 cut(s)	79
SphI	GCATGC	1 cut(s)	2556
SseBI	AGGCCT	1 cut(s)	1736
SspMI	CTAG	4 cut(s)	80, 1157, 1773, 3162
SstI	GAGCTC	1 cut(s)	2362
StuI	AGGCCT	1 cut(s)	1736
StyD4I	CCNGG	8 cut(s)	232, 282, 339, 385, 590, 1040, 1465, 3171
StyI	CCWWGG	7 cut(s)	621, 686, 1432, 2135, 2881, 2979, 3064
TaiI	ACGT	6 cut(s)	113, 119, 1492, 2446, 2622, 2762
TaqI	TCGA	7 cut(s)	5, 952, 1025, 1758, 2356, 2485, 2893
TauI	GCSGC	2 cut(s)	227, 434
TfiI	GAWTC	8 cut(s)	446, 949, 1136, 1324, 1816, 1908, 2426, 2696
Tru1I	TTAA	9 cut(s)	576, 675, 927, 1248, 2040, 2175, 2808, 3050, 3210
Tru9I	TTAA	9 cut(s)	576, 675, 927, 1248, 2040, 2175, 2808, 3050, 3210
TscAI	CASTG	8 cut(s)	637, 975, 1171, 1220, 1389, 2218, 2578, 2839
TseFI	GTSAC	3 cut(s)	2477, 2563, 3092
Tsp45I	GTSAC	3 cut(s)	2477, 2563, 3092
TspDTI	ATGAA	7 cut(s)	459, 1016, 2316, 2388, 2948, 2963, 2979
TspGWI	ACGGA	1 cut(s)	1690
TspRI	CASTG	8 cut(s)	637, 975, 1171, 1220, 1389, 2218, 2578, 2839
Van91I	CCANNNNNTGG	3 cut(s)	141, 204, 1587
VpaK11BI	GGWCC	4 cut(s)	144, 303, 1469, 2140
XapI	RAATTY	4 cut(s)	211, 364, 1010, 2987
XceI	RCATGY	3 cut(s)	964, 1832, 2556
XcmI	CCANNNNNNNNNTGG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	2970
XspI	CTAG	4 cut(s)	80, 1157, 1773, 3162
Zsp2I	ATGCAT	1 cut(s)	2558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.