pycom348g00040

HPC2 and ubinuclein domain

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00000348
Physical Location & Seq
Forward (+)
33530 .. 38095
4566 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom348g00040.7

Sequence Viewer

Length: 1596 bp
ATGGAGGAAGAGAAGGGCGGCGGCGGCGAATCCTCCAGGCCTTCGTCCAAGTTTGTGAAAGCCGGTGACCGGCAAATGTTCACGGTGGATCTCCGGCCCGGCGAGACCACCATAGTCTCGTGGAGGAAGCTCATGAAGGACACGAACAAGGTCAATGGTGGGCCCTCGACCTCGGCACCGGAACCTCCTCCTGTCAACGCTCACCCTGCTCTCGAGTCTCGGATAGCTCCGTTGTTTCAGGTCCAACAACCATCTGGAGATGAAGCAAAAGATGAAGGGAAAGATGAAGCTGCGCCAAATCGTTTTAGCGCTGTTATTGAGAAGATTGAACGCCTATATATGGGTAAAGATAGTAGTGATGATGAAGGTCCAAATGATGTTCCTGATGACGATCAGTATGATACCGAAGACTCTTTTATTGATGATGCTGAGTTGGATGAATATTTTGAAGTTGATAATTCAGCCATAAAACATGATGGATTCTTTGTAAACAGGGGAACGCTGGAGCGCATTAATGTACCTGCTGCATTACCTAACCAACAGCCAAAAAAAAGGCGAAGAAAAGAGGCTAAAGGACCTGGGGAAAATGATGACATTCATGTGCCAAATAAACACACAAAAGTTGGTAAGACAGCAGCAGCAAAGATTACACCAACACTTGTGAAGAATTCATCTACTTCTACTCAAACCATTACTGGAACCACTGAACACCGTGCAGATGTGAAATTTCAGAATCAGTTGAATGTTTCTGGACCTTCATCCACAAGGAAGTCTACTGAATCCAAAACAGTAATGGACCCTTCTTTTATGAAAGTGTCAGACGGAGATGCTTTTGTACTGCAAGCGGATGTGAAGGATATAGATAAGCAGAAGGCAGGAGTCCTCTTGTCCAAAGACTCAAGTAACAAATTTAAAGATGCAGGTGGATCATCTGATGGTTCATATCAGAGATACCATGACAAAAGTGCTTATGCACAAACCAAACACCAATCTGGGAGAGCATCAAGTAATGTTGATGAGTTGGAATCATCGGTTCGGGCCAGACATAAAAATGGGATTCGTGAGATTCCGGACCTTAATCTCTCAGATGGAAAGTACTCTCTTCCAACAACTAAATCTTCACATGTGCACAAAAAGGATGGCTCTAGTATAAAGTCAAAAAGTTCAATGCTTGAAAAGGCTATTAGGGAGTTAGAGAAGATGGTAGCTGAATCTAGGCCACCTGCTGCGGATAATCAAGAGGGAGATAATTCATCCCAAGCAATTAAAAGGAGATTACCTAGAGAACTAAAGATGAAACTTGCTAAAGTTGCTAGACTAGCGGCTAGCCATGGGAAAATAACAAAAGAGTTACTTAACCGGCTTATGAGTATTCTTGGTCACTTAATACAGCTCAGAACATTAAAGAGAAACTTAAAGGTCATGATTAGTATGGGTATTTCAGCAAAAAAGGAGAAAGATGAGAGGTTTCAACATGTAAAGAAGGAAGTTATAGATATGATTAAGATAAAGGCCCCATCCTTGGAATCCAAGGTATGTGTTGCAGGTCCTTGCTGCGGTACGGTGTTTAATACGCTGTGTTCTTTTCCTGGGTAA

Protein Analysis

532

Amino Acids

58.37

Weight (kDa)

9.01

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 911, 1231
Acc36I ACCTGC 4 cut(s) 529, 911, 1231, 1535
AccB1I GGYRCC 1 cut(s) 175
AccI GTMKAC 1 cut(s) 773
AccIII TCCGGA 1 cut(s) 1069
AciI CCGC 7 cut(s) 18, 21, 24, 845, 1229, 1322, 1557
AclWI GGATC 2 cut(s) 96, 934
AcsI RAATTY 3 cut(s) 667, 725, 908
AfaI GTAC 4 cut(s) 519, 837, 1097, 1561
AfeI AGCGCT 1 cut(s) 310
AfiI CCNNNNNNNGG 4 cut(s) 69, 340, 1522, 1556
AflIII ACRYGT 2 cut(s) 1123, 1474
AgsI TTSAA 6 cut(s) 329, 449, 742, 1167, 1175, 1472
AjnI CCWGG 3 cut(s) 35, 577, 1588
AluBI AGCT 5 cut(s) 130, 227, 290, 1208, 1393
AluI AGCT 5 cut(s) 130, 227, 290, 1208, 1393
Alw21I GWGCWC 1 cut(s) 1131
Alw26I GTCTC 3 cut(s) 98, 121, 222
Alw44I GTGCAC 1 cut(s) 1127
AlwI GGATC 2 cut(s) 96, 934
Ama87I CYCGRG 1 cut(s) 212
Aor13HI TCCGGA 1 cut(s) 1069
Aor51HI AGCGCT 1 cut(s) 310
AoxI GGCC 6 cut(s) 38, 95, 161, 1038, 1217, 1512
ApaI GGGCCC 1 cut(s) 165
ApaLI GTGCAC 1 cut(s) 1127
ApeKI GCWGC 6 cut(s) 290, 524, 635, 638, 1226, 1554
ApoI RAATTY 3 cut(s) 667, 725, 908
AseI ATTAAT 1 cut(s) 513
AspLEI GCGC 3 cut(s) 295, 311, 510
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 77, 194
AsuNHI GCTAGC 1 cut(s) 1325
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 7 cut(s) 241, 368, 575, 752, 796, 1072, 1547
BaeGI GKGCMC 2 cut(s) 165, 1131
BanI GGYRCC 1 cut(s) 175
BanII GRGCYC 1 cut(s) 165
BauI CACGAG 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 414
Bbv12I GWGCWC 1 cut(s) 1131
BbvI GCAGC 6 cut(s) 277, 511, 647, 650, 1213, 1541
BccI CCATC 7 cut(s) 259, 470, 929, 1082, 1133, 1195, 1525
BciT130I CCWGG 3 cut(s) 37, 579, 1590
BcnI CCSGG 1 cut(s) 99
BcoDI GTCTC 3 cut(s) 98, 121, 222
BfaI CTAG 6 cut(s) 1146, 1215, 1281, 1314, 1319, 1326
BfoI RGCGCY 1 cut(s) 312
BfuAI ACCTGC 4 cut(s) 529, 911, 1231, 1535
BmcAI AGTACT 1 cut(s) 1097
Bme1390I CCNGG 4 cut(s) 37, 99, 579, 1590
Bme18I GGWCC 7 cut(s) 241, 368, 575, 752, 796, 1072, 1547
BmeT110I CYCGRG 1 cut(s) 212
BmiI GGNNCC 6 cut(s) 163, 177, 183, 700, 798, 1515
BmrFI CCNGG 4 cut(s) 37, 99, 579, 1590
BmsI GCATC 4 cut(s) 415, 817, 907, 1010
BmtI GCTAGC 1 cut(s) 1329
BpiI GAAGAC 1 cut(s) 414
BpmI CTGGAG 3 cut(s) 19, 276, 524
BpuEI CTTGAG 1 cut(s) 883
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 390
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 6 cut(s) 171, 578, 1330, 1521, 1530, 1589
BsaWI WCCGGW 2 cut(s) 178, 1069
Bsc4I CCNNNNNNNGG 4 cut(s) 69, 340, 1522, 1556
Bse118I RCCGGY 3 cut(s) 62, 69, 1359
Bse1I ACTGG 1 cut(s) 700
Bse8I GATNNNNATC 1 cut(s) 390
BseAI TCCGGA 1 cut(s) 1069
BseBI CCWGG 3 cut(s) 37, 579, 1590
BseDI CCNNGG 6 cut(s) 171, 578, 1330, 1521, 1530, 1589
BseGI GGATG 6 cut(s) 442, 758, 853, 1144, 1253, 1517
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 4 cut(s) 69, 340, 1522, 1556
BseMII CTCAG 3 cut(s) 420, 1098, 1408
BseNI ACTGG 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 2 cut(s) 165, 1131
BseXI GCAGC 6 cut(s) 277, 511, 647, 650, 1213, 1541
BsgI GTGCAG 1 cut(s) 735
BshFI GGCC 6 cut(s) 40, 97, 163, 1040, 1219, 1514
BshNI GGYRCC 1 cut(s) 175
BsiHKAI GWGCWC 1 cut(s) 1131
BsiHKCI CYCGRG 1 cut(s) 212
BsiSI CCGG 7 cut(s) 63, 70, 94, 99, 179, 1070, 1360
BslI CCNNNNNNNGG 4 cut(s) 69, 340, 1522, 1556
BsmAI GTCTC 3 cut(s) 98, 121, 222
BsnI GGCC 6 cut(s) 40, 97, 163, 1040, 1219, 1514
Bso31I GGTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 212
Bsp120I GGGCCC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 165, 1131
Bsp13I TCCGGA 1 cut(s) 1069
Bsp143I GATC 3 cut(s) 88, 391, 926
Bsp19I CCATGG 1 cut(s) 1330
BspACI CCGC 7 cut(s) 18, 21, 24, 845, 1229, 1322, 1557
BspANI GGCC 6 cut(s) 40, 97, 163, 1040, 1219, 1514
BspCNI CTCAG 3 cut(s) 421, 1097, 1407
BspEI TCCGGA 1 cut(s) 1069
BspHI TCATGA 2 cut(s) 132, 1422
BspLI GGNNCC 6 cut(s) 163, 177, 183, 700, 798, 1515
BspMI ACCTGC 4 cut(s) 529, 911, 1231, 1535
BspOI GCTAGC 1 cut(s) 1329
BspPI GGATC 2 cut(s) 96, 934
BspT107I GGYRCC 1 cut(s) 175
BspTNI GGTCTC 1 cut(s) 98
BsrFI RCCGGY 3 cut(s) 62, 69, 1359
BsrI ACTGG 1 cut(s) 700
BssAI RCCGGY 3 cut(s) 62, 69, 1359
BssECI CCNNGG 6 cut(s) 171, 578, 1330, 1521, 1530, 1589
BssMI GATC 3 cut(s) 88, 391, 926
BssSI CACGAG 1 cut(s) 118
BssT1I CCWWGG 3 cut(s) 1330, 1521, 1530
Bst2BI CACGAG 1 cut(s) 118
Bst2UI CCWGG 3 cut(s) 37, 579, 1590
Bst4CI ACNGT 4 cut(s) 85, 713, 790, 1564
Bst6I CTCTTC 2 cut(s) 3, 1107
BstC8I GCNNGC 2 cut(s) 843, 1327
BstDEI CTNAG 3 cut(s) 429, 1084, 1394
BstDSI CCRYGG 1 cut(s) 1330
BstEII GGTNACC 1 cut(s) 65
BstF5I GGATG 6 cut(s) 442, 758, 853, 1144, 1253, 1517
BstH2I RGCGCY 1 cut(s) 312
BstHHI GCGC 3 cut(s) 295, 311, 510
BstKTI GATC 3 cut(s) 91, 394, 929
BstMAI GTCTC 3 cut(s) 98, 121, 222
BstMBI GATC 3 cut(s) 88, 391, 926
BstMWI GCNNNNNNNGC 4 cut(s) 24, 206, 1310, 1319
BstNI CCWGG 3 cut(s) 37, 579, 1590
BstNSI RCATGY 2 cut(s) 1127, 1478
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 4 cut(s) 35, 97, 577, 1588
BstSLI GKGCMC 2 cut(s) 165, 1131
BstV1I GCAGC 6 cut(s) 277, 511, 647, 650, 1213, 1541
BstV2I GAAGAC 1 cut(s) 414
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 6 cut(s) 40, 97, 163, 1040, 1219, 1514
BtgI CCRYGG 1 cut(s) 1330
BtsCI GGATG 6 cut(s) 442, 758, 853, 1144, 1253, 1517
BtsIMutI CAGTG 1 cut(s) 702
BveI ACCTGC 4 cut(s) 529, 911, 1231, 1535
Cac8I GCNNGC 2 cut(s) 843, 1327
CciI TCATGA 2 cut(s) 132, 1422
CfoI GCGC 3 cut(s) 295, 311, 510
Cfr10I RCCGGY 3 cut(s) 62, 69, 1359
Csp6I GTAC 4 cut(s) 518, 836, 1096, 1560
CviAII CATG 8 cut(s) 133, 473, 599, 956, 1124, 1331, 1423, 1475
CviQI GTAC 4 cut(s) 518, 836, 1096, 1560
DdeI CTNAG 3 cut(s) 429, 1084, 1394
DpnI GATC 3 cut(s) 90, 393, 928
DpnII GATC 3 cut(s) 88, 391, 926
DraI TTTAAA 1 cut(s) 913
Eam1104I CTCTTC 2 cut(s) 3, 1107
EarI CTCTTC 2 cut(s) 3, 1107
Eco130I CCWWGG 3 cut(s) 1330, 1521, 1530
Eco147I AGGCCT 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 7 cut(s) 241, 368, 575, 752, 796, 1072, 1547
Eco47III AGCGCT 1 cut(s) 310
Eco88I CYCGRG 1 cut(s) 212
Eco91I GGTNACC 1 cut(s) 65
EcoO109I RGGNCCY 4 cut(s) 162, 575, 1513, 1547
EcoO65I GGTNACC 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 667
EcoRII CCWGG 3 cut(s) 35, 577, 1588
EcoT14I CCWWGG 3 cut(s) 1330, 1521, 1530
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 3 cut(s) 1330, 1521, 1530
FaeI CATG 8 cut(s) 136, 476, 602, 959, 1127, 1334, 1426, 1478
FalI AAGNNNNNCTT 4 cut(s) 1338, 1370, 1397, 1429
FatI CATG 8 cut(s) 132, 472, 598, 955, 1123, 1330, 1422, 1474
FblI GTMKAC 1 cut(s) 773
FokI GGATG 6 cut(s) 449, 745, 860, 1151, 1240, 1504
FriOI GRGCYC 1 cut(s) 165
FspBI CTAG 6 cut(s) 1146, 1215, 1281, 1314, 1319, 1326
GlaI GCGC 3 cut(s) 294, 310, 509
GsuI CTGGAG 3 cut(s) 19, 276, 524
HaeII RGCGCY 1 cut(s) 312
HaeIII GGCC 6 cut(s) 40, 97, 163, 1040, 1219, 1514
HapII CCGG 7 cut(s) 63, 70, 94, 99, 179, 1070, 1360
HhaI GCGC 3 cut(s) 295, 311, 510
Hin1II CATG 8 cut(s) 136, 476, 602, 959, 1127, 1334, 1426, 1478
Hin6I GCGC 3 cut(s) 293, 309, 508
HinP1I GCGC 3 cut(s) 293, 309, 508
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HpaII CCGG 7 cut(s) 63, 70, 94, 99, 179, 1070, 1360
HphI GGTGA 2 cut(s) 77, 194
Hpy166II GTNNAC 5 cut(s) 81, 196, 490, 774, 1129
Hpy188I TCNGA 7 cut(s) 222, 732, 820, 934, 948, 1087, 1397
Hpy188III TCNNGA 9 cut(s) 133, 212, 255, 383, 750, 1061, 1070, 1238, 1423
Hpy8I GTNNAC 5 cut(s) 81, 196, 490, 774, 1129
HpyCH4III ACNGT 4 cut(s) 85, 713, 790, 1564
HpyCH4V TGCA 7 cut(s) 527, 716, 841, 920, 974, 1129, 1544
HpyF10VI GCNNNNNNNGC 4 cut(s) 24, 206, 1310, 1319
HpyF3I CTNAG 3 cut(s) 429, 1084, 1394
Hsp92II CATG 8 cut(s) 136, 476, 602, 959, 1127, 1334, 1426, 1478
HspAI GCGC 3 cut(s) 293, 309, 508
Kpn2I TCCGGA 1 cut(s) 1069
Kzo9I GATC 3 cut(s) 88, 391, 926
LmnI GCTCC 2 cut(s) 232, 505
Lsp1109I GCAGC 6 cut(s) 277, 511, 647, 650, 1213, 1541
LweI GCATC 4 cut(s) 415, 817, 907, 1010
MaeI CTAG 6 cut(s) 1146, 1215, 1281, 1314, 1319, 1326
MaeIII GTNAC 4 cut(s) 65, 902, 1350, 1379
MalI GATC 3 cut(s) 90, 393, 928
MboI GATC 3 cut(s) 88, 391, 926
MboII GAAGA 8 cut(s) 20, 334, 419, 570, 676, 1094, 1110, 1210
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 2 cut(s) 165, 1131
MluCI AATT 6 cut(s) 457, 667, 725, 908, 1249, 1263
MlyI GAGTC 4 cut(s) 224, 404, 888, 890
MmeI TCCRAC 4 cut(s) 268, 414, 1002, 1130
MroI TCCGGA 1 cut(s) 1069
MslI CAYNNNNRTG 2 cut(s) 599, 1050
MspI CCGG 7 cut(s) 63, 70, 94, 99, 179, 1070, 1360
MspR9I CCNGG 4 cut(s) 37, 99, 579, 1590
MvaI CCWGG 3 cut(s) 37, 579, 1590
MwoI GCNNNNNNNGC 4 cut(s) 24, 206, 1310, 1319
NciI CCSGG 1 cut(s) 99
NcoI CCATGG 1 cut(s) 1330
NdeII GATC 3 cut(s) 88, 391, 926
NheI GCTAGC 1 cut(s) 1325
NlaIII CATG 8 cut(s) 136, 476, 602, 959, 1127, 1334, 1426, 1478
NlaIV GGNNCC 6 cut(s) 163, 177, 183, 700, 798, 1515
NmeAIII GCCGAG 1 cut(s) 152
NmuCI GTSAC 2 cut(s) 65, 1379
NspI RCATGY 2 cut(s) 1127, 1478
PaeR7I CTCGAG 1 cut(s) 212
PagI TCATGA 2 cut(s) 132, 1422
PaqCI CACCTGC 2 cut(s) 911, 1231
PceI AGGCCT 1 cut(s) 40
PciI ACATGT 2 cut(s) 1123, 1474
PfeI GAWTC 9 cut(s) 29, 480, 733, 779, 1025, 1057, 1066, 1211, 1526
PleI GAGTC 4 cut(s) 223, 404, 887, 890
PpsI GAGTC 4 cut(s) 223, 404, 887, 890
PpuMI RGGWCCY 2 cut(s) 575, 1547
PscI ACATGT 2 cut(s) 1123, 1474
PshBI ATTAAT 1 cut(s) 513
Psp5II RGGWCCY 2 cut(s) 575, 1547
Psp6I CCWGG 3 cut(s) 35, 577, 1588
PspEI GGTNACC 1 cut(s) 65
PspGI CCWGG 3 cut(s) 35, 577, 1588
PspN4I GGNNCC 6 cut(s) 163, 177, 183, 700, 798, 1515
PspOMI GGGCCC 1 cut(s) 161
PspPPI RGGWCCY 2 cut(s) 575, 1547
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 4 cut(s) 519, 837, 1097, 1561
RsaNI GTAC 4 cut(s) 518, 836, 1096, 1560
RseI CAYNNNNRTG 2 cut(s) 599, 1050
Sau3AI GATC 3 cut(s) 88, 391, 926
ScaI AGTACT 1 cut(s) 1097
SchI GAGTC 4 cut(s) 224, 404, 888, 890
ScrFI CCNGG 4 cut(s) 37, 99, 579, 1590
SduI GDGCHC 2 cut(s) 165, 1131
SfaNI GCATC 4 cut(s) 415, 817, 907, 1010
Sfr274I CTCGAG 1 cut(s) 212
SinI GGWCC 7 cut(s) 241, 368, 575, 752, 796, 1072, 1547
SlaI CTCGAG 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 599, 1050
SmlI CTYRAG 2 cut(s) 212, 898
SmoI CTYRAG 2 cut(s) 212, 898
Sse9I AATT 6 cut(s) 457, 667, 725, 908, 1249, 1263
SseBI AGGCCT 1 cut(s) 40
SsiI CCGC 7 cut(s) 18, 21, 24, 845, 1229, 1322, 1557
SspI AATATT 1 cut(s) 443
SspMI CTAG 6 cut(s) 1146, 1215, 1281, 1314, 1319, 1326
StuI AGGCCT 1 cut(s) 40
StyD4I CCNGG 4 cut(s) 35, 97, 577, 1588
StyI CCWWGG 3 cut(s) 1330, 1521, 1530
TaaI ACNGT 4 cut(s) 85, 713, 790, 1564
TaqI TCGA 2 cut(s) 167, 213
TasI AATT 6 cut(s) 457, 667, 725, 908, 1249, 1263
TatI WGTACW 2 cut(s) 835, 1095
TauI GCSGC 4 cut(s) 21, 24, 27, 1325
TfiI GAWTC 9 cut(s) 29, 480, 733, 779, 1025, 1057, 1066, 1211, 1526
TscAI CASTG 1 cut(s) 709
TseFI GTSAC 2 cut(s) 65, 1379
TseI GCWGC 6 cut(s) 290, 524, 635, 638, 1226, 1554
Tsp45I GTSAC 2 cut(s) 65, 1379
TspGWI ACGGA 2 cut(s) 219, 837
TspRI CASTG 1 cut(s) 709
VneI GTGCAC 1 cut(s) 1127
VpaK11BI GGWCC 7 cut(s) 241, 368, 575, 752, 796, 1072, 1547
VspI ATTAAT 1 cut(s) 513
XapI RAATTY 3 cut(s) 667, 725, 908
XceI RCATGY 2 cut(s) 1127, 1478
XcmI CCANNNNNNNNNTGG 2 cut(s) 251, 790
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 773
XspI CTAG 6 cut(s) 1146, 1215, 1281, 1314, 1319, 1326
ZrmI AGTACT 1 cut(s) 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.