Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003763

Physical Location & Seq

Genomic Coordinates Forward (+)

11548083 .. 11553634

Gene Structure 5552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011669

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGGACGAGCAGAAGGCCGGCCCCGAATCCTCGAGGGCCTCCACCTCGTTTCTCAAAGCCGGCGACCGGCAAATGTTCACGGTGGAGCTCCGACCCGGCGAGACCACCATAGTCTCCTGGAAGAAGCTCGTCAGGGACACTAATAAGGTCAATGGCCTGCCTCTGCCCGCTGCCACTGCCCCCGACCCTCCCCCCAACGCTCACCCTAGCCTCGAGGCTCGTATAGCTCCGGTGCAACCTTCTGGAGAGGGAGAGGGAGAGGGAGAGGAAGGGAAAGATGAAGCTGCGCCGAATCGTTTTAGTGCTGTGATTGAGAAGATTGAGCGCCTATATATGGGTAAAGATAGTAGCGACGATGAAGATCAAAATATTCCTGATGACGATCAGTATGATACTGAGGACTCTTTTATTGATGATGCTGAGTTGGATGAATATTTTGAAGTTGATAATTCAGCTATAAAACATGACGGATTCTTTGTTAACAGGGGCCAACTAGAACGGATAAACACAACTGCTGCATTACCTAACCAGCAACCAAAGAAAAGGAGAAGAAAAGAGGCAAAGAGCCCCGGTGAAACTGATGACAGTCAAGTGGCAAATAAACAAGCAAAGTTAGGTAAGACAGCCGCAGCAAAGATTACATCGGGACTTGCAAAGAACTCATCTGCTCTCACTACTATTGCTGTAACCACGGAACACCGTGAAGATGTGAAATTTCAGAATCCATTGAATTCTTCCGGTTATTCATCCACTAAAAAGTCTGCTGATTCTAAAACAGTTATGAATCCTTCTCCTTTGAAAGCATTGGATGGAGATGCTTCTGCACTGCAAGCAGAGGTGAAGGATATTGATAAGTCTAAGTCAGGAATCCTACTTCCTAAGGACTCGAGTAATAGATTTAAAGATGCCGGTGGGTCCTCTGATGCATCGTGTCATAAGTATCATGATAAAAATGCTTATTCGCAAACCAAAACCCAGTCGGGTAGACTATCTAGCAACGCTGATGAGCTGGAATCATCAAAAACTTCACATTTGCATCGAAAGGAGGGTTCTAGTGTGAGGCCCAAGGGTTCGATGCTTGAAAAGGCTATTAGGGAGTTGGAGCGGATGGTTGCAGAATCAAGGCCACCTGCTATGGAGAATGCAGAGGGAGATAATTCATCCCAAGCAATTAAAAGGAGATTGCCTAGAGAAATAAAGATGAAGCTTGCTAAAGTTGCTAGACTAGCGGCTAGCCATGGAAAAATATCAAAAGAGTTGCTTAACCGGCTTATGAGTATTCTTGGCCACTTAATACAGCTCAGGACGTTAAAGAGAAACTTAAAGGTTATGATTAGTATGGGTCTATCAGCCAAAAAGGAGAAAGATGACAGGTTTCAACAGATCAAGAAGGAAGTTGTAGATATGGTTAAGATAAATGTATCCTCTTTGGAGTCTAAGGCATTGGAACAAGCTGGAGCCTCCGATGATTTTCAAGAAATAGCCTCTGGAGCAAAAGAAGTCTCTAAAAGAAAGTTGAGCATGGATCCTGTTTTAGAGGAAAAGATTTGTGACCTCTATGACCTTTATGTTGATGGGCTGGATGAAGATATAGGTCCACAAATAAGAAAGCTCTATGCTGAGCTAGCGGGATTGTGGCCTAGTGGTTTCATGGACAATCATGGCATCAAAAGTGCAATTTGTCGGGCAAAAGATAGACGGCGGGAGCGATACAGCCAAAATAAAGATCAGGAGAAAATGAGGAGGAAAAAGATGTTGACTCCAAAATTAGAGGAGTCTGTTCGAGTTGATGCAAGTTCAATTCCCCAGCAACAGTATATACGAGAGAGATTGGCAACTGAACATGGCGGTCATGGTTCAGGGAACAAGCCTGTATCAGGTACAACAGCAGCTGTGAGGATACCCAGTCCAATAAACGGTCCTAGCTTTGACAGGCTTAAACAAGAGAAGCTCAAGGGAAGTGCAAGTAATTCCCCTGATGACACGAGGGTCGCAGATGGTGCATTGGTAAAGAAAAAGGTGAAGAGGAAGCCAGATCAAGAGTTGGATGAAACTCGGATACGGCCAGAAAAATTACCTTCCCAACAAGGTGAGGAAAGACAAAAGTCATTCAAGCAGGCGGCTGGTGTACCCCATAAGTCGAACCATCAATCCACAGGCCTTCCTAGCGCTGAGCAGTCTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0010468 GO:0016043 GO:0019222 GO:0030874 GO:0030875 GO:0031974 GO:0031981 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HUN

Protein Analysis

729

Amino Acids

80.27

Weight (kDa)

8.98

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HUN	PF08729	120 - 166	2.7e-12	HPC2 and ubinuclein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G77310 AT1G77310
fragaria_vesca	FvH4_2g27830 FvH4_2g27830 FvH4_2g27830 FvH4_2g27830
malus_domestica	MD08G1159200.v1.1
prunus_persica	Prupe.1G489600_v2.0.a1 Prupe.1G489600_v2.0.a1 Prupe.1G489600_v2.0.a1
pyrus_communis	pycom348g00040
rosa_chinensis	RchiOBHm_Chr6g0293421 RchiOBHm_Chr6g0296701
rosa_laevigata	RLG00000011667 RLG00000011669
rosa_multiflora	Rmu_sc0001741.1_g000003 Rmu_sc0001741.1_g000007
rosa_roxburghii	Rroxscaffold_7G00171250
rosa_rugosa	Rorug06G0264500 Rorug06G0264600 Rorug06G0264700
rosa_samantha	Rh6AG376100 Rh6BG384400 Rh6CG362400 Rh6CG389500 Rh6CG389700 Rh6DG376900
rosa_wichuraiana	Rw6G032880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1138
AasI	GACNNNNNNGTC	1 cut(s)	1988
AbsI	CCTCGAGG	2 cut(s)	31, 212
Acc36I	ACCTGC	1 cut(s)	1138
AccBSI	CCGCTC	1 cut(s)	1105
AccI	GTMKAC	1 cut(s)	985
AciI	CCGC	8 cut(s)	168, 627, 1105, 1229, 1628, 1702, 1848, 2120
AclWI	GGATC	2 cut(s)	1520, 1533
AcoI	YGGCCR	2 cut(s)	1285, 2063
AcsI	RAATTY	2 cut(s)	713, 730
AfaI	GTAC	2 cut(s)	1882, 2130
AfeI	AGCGCT	1 cut(s)	2170
AfiI	CCNNNNNNNGG	4 cut(s)	66, 334, 1877, 1916
AgsI	TTSAA	8 cut(s)	440, 730, 799, 1082, 1379, 1475, 1800, 2113
AjnI	CCWGG	1 cut(s)	116
AloI	GAACNNNNNNTCC	2 cut(s)	2135, 2167
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	3 cut(s)	95, 118, 1507
AlwI	GGATC	2 cut(s)	1520, 1533
AlwNI	CAGNNNCTG	1 cut(s)	1892
Ama87I	CYCGRG	3 cut(s)	31, 212, 886
Aor51HI	AGCGCT	1 cut(s)	2170
ApeKI	GCWGC	5 cut(s)	170, 284, 515, 629, 1889
ApoI	RAATTY	2 cut(s)	713, 730
ArsI	GACNNNNNNTTYG	2 cut(s)	458, 490
AspLEI	GCGC	3 cut(s)	289, 327, 2171
AspS9I	GGNCC	7 cut(s)	20, 36, 487, 915, 1062, 1595, 1919
AsuC2I	CCSGG	2 cut(s)	96, 570
AsuHPI	GGTGA	5 cut(s)	194, 584, 850, 2032, 2102
AsuNHI	GCTAGC	2 cut(s)	1232, 1624
AvaI	CYCGRG	3 cut(s)	31, 212, 886
AvaII	GGWCC	3 cut(s)	915, 1595, 1919
AxyI	CCTNAGG	1 cut(s)	879
BalI	TGGCCA	1 cut(s)	1287
BamHI	GGATCC	1 cut(s)	1525
BanII	GRGCYC	2 cut(s)	90, 569
BauI	CACGAG	1 cut(s)	1984
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	5 cut(s)	157, 271, 502, 641, 1901
BccI	CCATC	5 cut(s)	803, 1102, 1568, 1991, 2154
BceAI	ACGGC	2 cut(s)	1715, 2078
BciT130I	CCWGG	1 cut(s)	118
BciVI	GTATCC	3 cut(s)	1432, 1893, 2052
BcnI	CCSGG	2 cut(s)	96, 570
BcoDI	GTCTC	3 cut(s)	95, 118, 1507
BfoI	RGCGCY	2 cut(s)	328, 2172
BfuAI	ACCTGC	1 cut(s)	1138
BfuI	GTATCC	3 cut(s)	1432, 1893, 2052
BisI	GCNGC	8 cut(s)	171, 285, 516, 627, 630, 1230, 1890, 2121
BlpI	GCTNAGC	2 cut(s)	1620, 2172
BlsI	GCNGC	8 cut(s)	172, 286, 517, 628, 631, 1231, 1891, 2122
Bme1390I	CCNGG	3 cut(s)	96, 118, 570
Bme18I	GGWCC	3 cut(s)	915, 1595, 1919
BmeT110I	CYCGRG	3 cut(s)	31, 212, 886
BmgT120I	GGNCC	7 cut(s)	20, 36, 487, 915, 1062, 1595, 1919
BmiI	GGNNCC	5 cut(s)	22, 488, 916, 1459, 1527
BmrFI	CCNGG	3 cut(s)	96, 118, 570
BmrI	ACTGGG	2 cut(s)	970, 1899
BmsI	GCATC	9 cut(s)	406, 805, 895, 913, 935, 1045, 1065, 1674, 1780
BmtI	GCTAGC	2 cut(s)	1236, 1628
BmuI	ACTGGG	2 cut(s)	970, 1899
BoxI	GACNNNNGTC	1 cut(s)	2104
BpmI	CTGGAG	3 cut(s)	264, 1476, 1509
Bpu10I	CCTNAGC	1 cut(s)	1301
Bpu1102I	GCTNAGC	2 cut(s)	1620, 2172
BpuEI	CTTGAG	1 cut(s)	1937
BpuMI	CCSGG	2 cut(s)	96, 570
BsaBI	GATNNNNATC	2 cut(s)	360, 381
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	4 cut(s)	568, 690, 1065, 1237
BsaWI	WCCGGW	2 cut(s)	229, 737
Bsc4I	CCNNNNNNNGG	4 cut(s)	66, 334, 1877, 1916
Bse118I	RCCGGY	5 cut(s)	17, 59, 66, 908, 1266
Bse1I	ACTGG	2 cut(s)	976, 1905
Bse21I	CCTNAGG	1 cut(s)	879
Bse8I	GATNNNNATC	2 cut(s)	360, 381
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	4 cut(s)	568, 690, 1065, 1237
BseGI	GGATG	7 cut(s)	433, 746, 814, 1113, 1160, 1588, 2053
BseJI	GATNNNNATC	2 cut(s)	360, 381
BseLI	CCNNNNNNNGG	4 cut(s)	66, 334, 1877, 1916
BseMII	CTCAG	5 cut(s)	387, 411, 1315, 1611, 2163
BseNI	ACTGG	2 cut(s)	976, 1905
BseRI	GAGGAG	2 cut(s)	1756, 1787
BseXI	GCAGC	5 cut(s)	157, 271, 502, 641, 1901
BseYI	CCCAGC	1 cut(s)	1806
BsgI	GTGCAG	1 cut(s)	807
Bsh1285I	CGRYCG	1 cut(s)	67
BsiEI	CGRYCG	1 cut(s)	67
BsiHKAI	GWGCWC	1 cut(s)	90
BsiHKCI	CYCGRG	3 cut(s)	31, 212, 886
BsiSI	CCGG	9 cut(s)	18, 60, 67, 96, 230, 570, 738, 909, 1267
BslFI	GGGAC	2 cut(s)	149, 660
BslI	CCNNNNNNNGG	4 cut(s)	66, 334, 1877, 1916
BsmAI	GTCTC	3 cut(s)	95, 118, 1507
BsmFI	GGGAC	2 cut(s)	149, 660
BsmI	GAATGC	1 cut(s)	1147
Bso31I	GGTCTC	1 cut(s)	95
BsoBI	CYCGRG	3 cut(s)	31, 212, 886
Bsp1286I	GDGCHC	2 cut(s)	90, 569
Bsp143I	GATC	6 cut(s)	361, 382, 1383, 1525, 1726, 2035
Bsp1720I	GCTNAGC	2 cut(s)	1620, 2172
Bsp19I	CCATGG	1 cut(s)	1237
BspACI	CCGC	8 cut(s)	168, 627, 1105, 1229, 1628, 1702, 1848, 2120
BspCNI	CTCAG	5 cut(s)	388, 412, 1314, 1612, 2164
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	5 cut(s)	22, 488, 916, 1459, 1527
BspMI	ACCTGC	1 cut(s)	1138
BspOI	GCTAGC	2 cut(s)	1236, 1628
BspPI	GGATC	2 cut(s)	1520, 1533
BspTNI	GGTCTC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	1105
BsrFI	RCCGGY	5 cut(s)	17, 59, 66, 908, 1266
BsrI	ACTGG	2 cut(s)	976, 1905
BssAI	RCCGGY	5 cut(s)	17, 59, 66, 908, 1266
BssECI	CCNNGG	4 cut(s)	568, 690, 1065, 1237
BssMI	GATC	6 cut(s)	361, 382, 1383, 1525, 1726, 2035
BssSI	CACGAG	1 cut(s)	1984
BssT1I	CCWWGG	2 cut(s)	1065, 1237
Bst2BI	CACGAG	1 cut(s)	1984
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	6 cut(s)	82, 587, 701, 778, 1815, 1919
Bst6I	CTCTTC	1 cut(s)	2018
BstAPI	GCANNNNNTGC	1 cut(s)	2000
BstC8I	GCNNGC	9 cut(s)	19, 61, 158, 168, 831, 1209, 1234, 1626, 2118
BstDEI	CTNAG	8 cut(s)	396, 420, 858, 879, 1301, 1437, 1620, 2172
BstDSI	CCRYGG	2 cut(s)	690, 1237
BstENI	CCTNNNNNAGG	1 cut(s)	1875
BstF5I	GGATG	7 cut(s)	433, 746, 814, 1113, 1160, 1588, 2053
BstH2I	RGCGCY	2 cut(s)	328, 2172
BstHHI	GCGC	3 cut(s)	289, 327, 2171
BstKTI	GATC	6 cut(s)	364, 385, 1386, 1528, 1729, 2038
BstMAI	GTCTC	3 cut(s)	95, 118, 1507
BstMBI	GATC	6 cut(s)	361, 382, 1383, 1525, 1726, 2035
BstMCI	CGRYCG	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	118
BstPAI	GACNNNNGTC	1 cut(s)	2104
BstSCI	CCNGG	3 cut(s)	94, 116, 568
BstV1I	GCAGC	5 cut(s)	157, 271, 502, 641, 1901
BstX2I	RGATCY	1 cut(s)	1525
BstYI	RGATCY	1 cut(s)	1525
Bsu36I	CCTNAGG	1 cut(s)	879
BsuI	GTATCC	3 cut(s)	1432, 1893, 2052
BtgI	CCRYGG	2 cut(s)	690, 1237
BtsCI	GGATG	7 cut(s)	433, 746, 814, 1113, 1160, 1588, 2053
BtsI	GCAGTG	2 cut(s)	174, 824
BtsIMutI	CAGTG	2 cut(s)	174, 824
BveI	ACCTGC	1 cut(s)	1138
Cac8I	GCNNGC	9 cut(s)	19, 61, 158, 168, 831, 1209, 1234, 1626, 2118
CaiI	CAGNNNCTG	1 cut(s)	1892
CciI	TCATGA	1 cut(s)	943
CfoI	GCGC	3 cut(s)	289, 327, 2171
Cfr10I	RCCGGY	5 cut(s)	17, 59, 66, 908, 1266
Cfr13I	GGNCC	7 cut(s)	20, 36, 487, 915, 1062, 1595, 1919
Csp6I	GTAC	2 cut(s)	1881, 2129
CviAII	CATG	8 cut(s)	464, 944, 1238, 1522, 1651, 1661, 1844, 1853
CviQI	GTAC	2 cut(s)	1881, 2129
DdeI	CTNAG	8 cut(s)	396, 420, 858, 879, 1301, 1437, 1620, 2172
DpnI	GATC	6 cut(s)	363, 384, 1385, 1527, 1728, 2037
DpnII	GATC	6 cut(s)	361, 382, 1383, 1525, 1726, 2035
DraI	TTTAAA	1 cut(s)	901
DrdI	GACNNNNNNGTC	1 cut(s)	1988
DseDI	GACNNNNNNGTC	1 cut(s)	1988
EaeI	YGGCCR	2 cut(s)	1285, 2063
Eam1104I	CTCTTC	1 cut(s)	2018
EarI	CTCTTC	1 cut(s)	2018
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	2 cut(s)	1065, 1237
Eco147I	AGGCCT	1 cut(s)	2160
Eco24I	GRGCYC	2 cut(s)	90, 569
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	3 cut(s)	915, 1595, 1919
Eco47III	AGCGCT	1 cut(s)	2170
Eco53kI	GAGCTC	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	879
Eco88I	CYCGRG	3 cut(s)	31, 212, 886
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	1875
EcoO109I	RGGNCCY	2 cut(s)	36, 915
EcoRI	GAATTC	1 cut(s)	730
EcoRII	CCWGG	1 cut(s)	116
EcoT14I	CCWWGG	2 cut(s)	1065, 1237
EcoT22I	ATGCAT	1 cut(s)	928
EcoT38I	GRGCYC	2 cut(s)	90, 569
ErhI	CCWWGG	2 cut(s)	1065, 1237
FaeI	CATG	8 cut(s)	467, 947, 1241, 1525, 1654, 1664, 1847, 1856
FalI	AAGNNNNNCTT	4 cut(s)	1245, 1277, 1304, 1336
FaqI	GGGAC	2 cut(s)	149, 660
FatI	CATG	8 cut(s)	463, 943, 1237, 1521, 1650, 1660, 1843, 1852
FauI	CCCGC	3 cut(s)	175, 1621, 1695
FblI	GTMKAC	1 cut(s)	985
Fnu4HI	GCNGC	8 cut(s)	171, 285, 516, 627, 630, 1230, 1890, 2121
FokI	GGATG	7 cut(s)	440, 733, 821, 1120, 1147, 1595, 2060
FriOI	GRGCYC	2 cut(s)	90, 569
FseI	GGCCGGCC	1 cut(s)	21
Fsp4HI	GCNGC	8 cut(s)	171, 285, 516, 627, 630, 1230, 1890, 2121
GlaI	GCGC	3 cut(s)	288, 326, 2170
GluI	GCNGC	8 cut(s)	171, 285, 516, 627, 630, 1230, 1890, 2121
GsaI	CCCAGC	1 cut(s)	1810
GsuI	CTGGAG	3 cut(s)	264, 1476, 1509
HaeII	RGCGCY	2 cut(s)	328, 2172
HapII	CCGG	9 cut(s)	18, 60, 67, 96, 230, 570, 738, 909, 1267
HhaI	GCGC	3 cut(s)	289, 327, 2171
Hin1II	CATG	8 cut(s)	467, 947, 1241, 1525, 1654, 1664, 1847, 1856
Hin6I	GCGC	3 cut(s)	287, 325, 2169
HinP1I	GCGC	3 cut(s)	287, 325, 2169
HincII	GTYRAC	2 cut(s)	481, 1758
HindII	GTYRAC	2 cut(s)	481, 1758
HindIII	AAGCTT	1 cut(s)	1205
HpaI	GTTAAC	1 cut(s)	481
HpaII	CCGG	9 cut(s)	18, 60, 67, 96, 230, 570, 738, 909, 1267
HphI	GGTGA	5 cut(s)	194, 584, 850, 2032, 2102
Hpy166II	GTNNAC	6 cut(s)	78, 481, 986, 1598, 1758, 2129
Hpy188I	TCNGA	5 cut(s)	92, 720, 922, 1465, 2058
Hpy8I	GTNNAC	6 cut(s)	78, 481, 986, 1598, 1758, 2129
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	8 cut(s)	7, 249, 263, 798, 835, 1384, 2088, 2171
HpyCH4III	ACNGT	6 cut(s)	82, 587, 701, 778, 1815, 1919
HpyCH4IV	ACGT	1 cut(s)	1307
HpyF3I	CTNAG	8 cut(s)	396, 420, 858, 879, 1301, 1437, 1620, 2172
HpySE526I	ACGT	1 cut(s)	1307
Hsp92II	CATG	8 cut(s)	467, 947, 1241, 1525, 1654, 1664, 1847, 1856
HspAI	GCGC	3 cut(s)	287, 325, 2169
KroI	GCCGGC	2 cut(s)	17, 59
KroNI	GCCGGC	2 cut(s)	19, 61
KspAI	GTTAAC	1 cut(s)	481
Kzo9I	GATC	6 cut(s)	361, 382, 1383, 1525, 1726, 2035
LmnI	GCTCC	7 cut(s)	85, 93, 232, 1102, 1457, 1490, 1705
Lsp1109I	GCAGC	5 cut(s)	157, 271, 502, 641, 1901
LweI	GCATC	9 cut(s)	406, 805, 895, 913, 935, 1045, 1065, 1674, 1780
MaeII	ACGT	1 cut(s)	1307
MaeIII	GTNAC	2 cut(s)	685, 1550
MalI	GATC	6 cut(s)	363, 384, 1385, 1527, 1728, 2037
MbiI	CCGCTC	1 cut(s)	1105
MboI	GATC	6 cut(s)	361, 382, 1383, 1525, 1726, 2035
MboII	GAAGA	8 cut(s)	133, 328, 371, 561, 716, 726, 1598, 2035
MflI	RGATCY	1 cut(s)	1525
MhlI	GDGCHC	2 cut(s)	90, 569
MlsI	TGGCCA	1 cut(s)	1287
MluNI	TGGCCA	1 cut(s)	1287
MlyI	GAGTC	5 cut(s)	395, 878, 1442, 1753, 1784
MmeI	TCCRAC	4 cut(s)	115, 405, 1080, 2025
Mox20I	TGGCCA	1 cut(s)	1287
Mph1103I	ATGCAT	1 cut(s)	928
MroNI	GCCGGC	2 cut(s)	17, 59
MscI	TGGCCA	1 cut(s)	1287
MseI	TTAA	9 cut(s)	480, 900, 1173, 1263, 1292, 1310, 1322, 1410, 1938
Msp20I	TGGCCA	1 cut(s)	1287
MspA1I	CMGCKG	2 cut(s)	170, 1892
MspI	CCGG	9 cut(s)	18, 60, 67, 96, 230, 570, 738, 909, 1267
MspR9I	CCNGG	3 cut(s)	96, 118, 570
Mva1269I	GAATGC	1 cut(s)	1147
MvaI	CCWGG	1 cut(s)	118
NaeI	GCCGGC	2 cut(s)	19, 61
NciI	CCSGG	2 cut(s)	96, 570
NcoI	CCATGG	1 cut(s)	1237
NdeII	GATC	6 cut(s)	361, 382, 1383, 1525, 1726, 2035
NgoMIV	GCCGGC	2 cut(s)	17, 59
NheI	GCTAGC	2 cut(s)	1232, 1624
NlaIII	CATG	8 cut(s)	467, 947, 1241, 1525, 1654, 1664, 1847, 1856
NlaIV	GGNNCC	5 cut(s)	22, 488, 916, 1459, 1527
NmuCI	GTSAC	1 cut(s)	1550
NsiI	ATGCAT	1 cut(s)	928
PaeR7I	CTCGAG	3 cut(s)	31, 212, 886
PagI	TCATGA	1 cut(s)	943
PaqCI	CACCTGC	1 cut(s)	1138
PceI	AGGCCT	1 cut(s)	2160
PcsI	WCGNNNNNNNCGW	1 cut(s)	1705
PctI	GAATGC	1 cut(s)	1147
PdiI	GCCGGC	2 cut(s)	19, 61
PfeI	GAWTC	9 cut(s)	26, 292, 471, 721, 767, 784, 867, 1013, 1118
PfoI	TCCNGGA	1 cut(s)	116
PkrI	GCNGC	8 cut(s)	172, 286, 517, 628, 631, 1231, 1891, 2122
PleI	GAGTC	5 cut(s)	395, 878, 1441, 1753, 1783
PpsI	GAGTC	5 cut(s)	395, 878, 1441, 1753, 1783
PpuMI	RGGWCCY	1 cut(s)	915
PshAI	GACNNNNGTC	1 cut(s)	2104
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	915
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	1806
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	5 cut(s)	22, 488, 916, 1459, 1527
PspPI	GGNCC	7 cut(s)	20, 36, 487, 915, 1062, 1595, 1919
PspPPI	RGGWCCY	1 cut(s)	915
PspXI	VCTCGAGB	3 cut(s)	31, 212, 886
PstNI	CAGNNNCTG	1 cut(s)	1892
PsuI	RGATCY	1 cut(s)	1525
PvuII	CAGCTG	1 cut(s)	1892
RigI	GGCCGGCC	1 cut(s)	21
RsaI	GTAC	2 cut(s)	1882, 2130
RsaNI	GTAC	2 cut(s)	1881, 2129
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	9 cut(s)	480, 900, 1173, 1263, 1292, 1310, 1322, 1410, 1938
SatI	GCNGC	8 cut(s)	171, 285, 516, 627, 630, 1230, 1890, 2121
Sau3AI	GATC	6 cut(s)	361, 382, 1383, 1525, 1726, 2035
Sau96I	GGNCC	7 cut(s)	20, 36, 487, 915, 1062, 1595, 1919
SchI	GAGTC	5 cut(s)	395, 878, 1442, 1753, 1784
ScrFI	CCNGG	3 cut(s)	96, 118, 570
SduI	GDGCHC	2 cut(s)	90, 569
SfaNI	GCATC	9 cut(s)	406, 805, 895, 913, 935, 1045, 1065, 1674, 1780
Sfr274I	CTCGAG	3 cut(s)	31, 212, 886
SinI	GGWCC	3 cut(s)	915, 1595, 1919
SlaI	CTCGAG	3 cut(s)	31, 212, 886
SmlI	CTYRAG	4 cut(s)	31, 212, 886, 1952
SmoI	CTYRAG	4 cut(s)	31, 212, 886, 1952
SseBI	AGGCCT	1 cut(s)	2160
SsiI	CCGC	8 cut(s)	168, 627, 1105, 1229, 1628, 1702, 1848, 2120
SspI	AATATT	2 cut(s)	370, 434
SstI	GAGCTC	1 cut(s)	90
StuI	AGGCCT	1 cut(s)	2160
StyD4I	CCNGG	3 cut(s)	94, 116, 568
StyI	CCWWGG	2 cut(s)	1065, 1237
TaaI	ACNGT	6 cut(s)	82, 587, 701, 778, 1815, 1919
TaiI	ACGT	1 cut(s)	1310
TaqI	TCGA	7 cut(s)	32, 213, 887, 1039, 1073, 1783, 2141
TauI	GCSGC	3 cut(s)	629, 1232, 2123
TfiI	GAWTC	9 cut(s)	26, 292, 471, 721, 767, 784, 867, 1013, 1118
Tru1I	TTAA	9 cut(s)	480, 900, 1173, 1263, 1292, 1310, 1322, 1410, 1938
Tru9I	TTAA	9 cut(s)	480, 900, 1173, 1263, 1292, 1310, 1322, 1410, 1938
TscAI	CASTG	2 cut(s)	181, 831
TseFI	GTSAC	1 cut(s)	1550
TseI	GCWGC	5 cut(s)	170, 284, 515, 629, 1889
Tsp45I	GTSAC	1 cut(s)	1550
TspGWI	ACGGA	3 cut(s)	483, 514, 707
TspRI	CASTG	2 cut(s)	181, 831
VpaK11BI	GGWCC	3 cut(s)	915, 1595, 1919
XagI	CCTNNNNNAGG	1 cut(s)	1875
XapI	RAATTY	2 cut(s)	713, 730
XhoI	CTCGAG	3 cut(s)	31, 212, 886
XmiI	GTMKAC	1 cut(s)	985
Zsp2I	ATGCAT	1 cut(s)	928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.