RLG00000011667

HPC2 and ubinuclein domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0003763
Physical Location & Seq
Forward (+)
11533440 .. 11537612
4173 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011667

Sequence Viewer

Length: 1203 bp
ATGGACGAGCAGAAGGCCGGCCCCGAATCCTCGAGGGCCTCCACCTCGTTTCTCAAAGCCGGCGACCGGCAAATGTTCACGGTGGAGCTCCGACCCGGCGAGACCACCATAGTCTCCTGGAAGAAGCTCGTCAGGGACACTAATAAGGTCAATGGCCTGCCTCTGCCCGCTGCCACTGCCCCCGACCCTCCCCCCAACGCTCACCCTAGCCTCGAGGCTCGTATAGCTCCGGTGCAACCTTCTGGAGAGGGAGAGGGAGAGGGAGAGGAAGGGAAAGATGAAGCTGCGCCGAATCGTTTTAGTGCTGTGATTGAGAAGATTGAGCGCCTATATATGGGTAAAGATAGTAGCGACGATGAAGATCAAAATATTCCTGATGACGATCAGTATGATACTGAGGACTCTTTTATTGATGATGCTGAGTTGGATGAATATTTTGAAGTTGATAATTCAGCTATAAAACATGACGGATTCTTTGTTAACAGGGGCCAACTAGAACGGATAAACACAACTGCTGCATTACCTAACCAGCAACCAAAGAAAAGGAGAAGAAAAGAGGCAAAGAGCCCCGGTGAAACTGATGACAGTCAAGTGGCAAATAAACAAGCAAAGTTAGGTAAGACAGCCGCAGCAAAGATTACATCGGGACTTGCAAAGAACTCATCTGCTCTCACTACTATTGCTAAAACTTCACATTTGCATCGAAAGGAGGGTTCTAGTGTGAGGCCCAAGGGTTCGATGCTTGAAAAGGCTATTAGGGAGTTGGAGCGGATGGTTGCAGAATCAAGGCCACCTGCTATGGAGAATGCAGAGGGAGATAATTCATCCCAAGCAATTAAAAGGAGATTGCCTAGAGAAATAAAGATGAAGCTTGCTAAAGTTGCTAGACTAGCGCAGGCTAGCCATGGAAAAATATCAAAAGAGTTGCTTAACCGGCTTATGAGTATTCTTGGCCACTTAATACAGCTCAGGACGTTAAAGAGAAACTTAAAGGATATGATTAGTATGGGTCTATCAGACAAAAAGGAGAAAGATGACAAGTTTCAACAGATCAAGAAGGAAGTTATAGATATGGTTAAGATAAATGTATCCTCTTTGGAGTCTAAGCTCTCTACTGCCCGTCTTCCATCTACATCGAGCATTGACTTTGGCATTCAAAGGCATTGGAACAAGCTGGAGCCTCCGATGATTTTCAAGAAATAG

Protein Analysis

401

Amino Acids

44.45

Weight (kDa)

9.0

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HUN PF08729 120 - 166 1.2e-12 HPC2 and ubinuclein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 802
AbsI CCTCGAGG 2 cut(s) 31, 212
Acc36I ACCTGC 1 cut(s) 802
AccBSI CCGCTC 1 cut(s) 769
AciI CCGC 3 cut(s) 168, 627, 769
AcoI YGGCCR 1 cut(s) 952
AfiI CCNNNNNNNGG 2 cut(s) 66, 334
AgsI TTSAA 5 cut(s) 440, 746, 1046, 1157, 1195
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 9 cut(s) 88, 127, 227, 284, 455, 871, 967, 1108, 1174
AluI AGCT 9 cut(s) 88, 127, 227, 284, 455, 871, 967, 1108, 1174
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 2 cut(s) 95, 118
Ama87I CYCGRG 2 cut(s) 31, 212
AoxI GGCC 8 cut(s) 15, 19, 36, 154, 487, 725, 788, 952
ApeKI GCWGC 4 cut(s) 170, 284, 515, 629
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
AspLEI GCGC 3 cut(s) 289, 327, 895
AspS9I GGNCC 4 cut(s) 20, 36, 487, 726
AsuC2I CCSGG 2 cut(s) 96, 570
AsuHPI GGTGA 2 cut(s) 194, 584
AsuNHI GCTAGC 1 cut(s) 899
AvaI CYCGRG 2 cut(s) 31, 212
BalI TGGCCA 1 cut(s) 954
BanII GRGCYC 2 cut(s) 90, 569
BbsI GAAGAC 1 cut(s) 1115
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 157, 271, 502, 641
BccI CCATC 2 cut(s) 766, 1135
BciT130I CCWGG 1 cut(s) 118
BciVI GTATCC 1 cut(s) 1099
BcnI CCSGG 2 cut(s) 96, 570
BcoDI GTCTC 2 cut(s) 95, 118
BfaI CTAG 7 cut(s) 207, 494, 717, 852, 885, 890, 900
BfoI RGCGCY 1 cut(s) 328
BfuAI ACCTGC 1 cut(s) 802
BfuI GTATCC 1 cut(s) 1099
BisI GCNGC 5 cut(s) 171, 285, 516, 627, 630
BlsI GCNGC 5 cut(s) 172, 286, 517, 628, 631
Bme1390I CCNGG 3 cut(s) 96, 118, 570
BmeT110I CYCGRG 2 cut(s) 31, 212
BmgT120I GGNCC 4 cut(s) 20, 36, 487, 726
BmiI GGNNCC 3 cut(s) 22, 488, 1179
BmrFI CCNGG 3 cut(s) 96, 118, 570
BmsI GCATC 3 cut(s) 406, 709, 729
BmtI GCTAGC 1 cut(s) 903
BpiI GAAGAC 1 cut(s) 1115
BpmI CTGGAG 2 cut(s) 264, 1196
Bpu10I CCTNAGC 1 cut(s) 968
BpuMI CCSGG 2 cut(s) 96, 570
BsaBI GATNNNNATC 2 cut(s) 360, 381
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 3 cut(s) 568, 729, 904
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 334
Bse118I RCCGGY 4 cut(s) 17, 59, 66, 933
Bse8I GATNNNNATC 2 cut(s) 360, 381
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 3 cut(s) 568, 729, 904
BseGI GGATG 3 cut(s) 433, 777, 824
BseJI GATNNNNATC 2 cut(s) 360, 381
BseLI CCNNNNNNNGG 2 cut(s) 66, 334
BseMII CTCAG 3 cut(s) 387, 411, 982
BseXI GCAGC 4 cut(s) 157, 271, 502, 641
Bsh1285I CGRYCG 1 cut(s) 67
BshFI GGCC 8 cut(s) 17, 21, 38, 156, 489, 727, 790, 954
BsiEI CGRYCG 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 2 cut(s) 31, 212
BsiSI CCGG 7 cut(s) 18, 60, 67, 96, 230, 570, 934
BslFI GGGAC 2 cut(s) 149, 660
BslI CCNNNNNNNGG 2 cut(s) 66, 334
BsmAI GTCTC 2 cut(s) 95, 118
BsmFI GGGAC 2 cut(s) 149, 660
BsmI GAATGC 2 cut(s) 811, 1152
BsnI GGCC 8 cut(s) 17, 21, 38, 156, 489, 727, 790, 954
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 2 cut(s) 31, 212
Bsp1286I GDGCHC 2 cut(s) 90, 569
Bsp143I GATC 3 cut(s) 361, 382, 1050
Bsp19I CCATGG 1 cut(s) 904
BspACI CCGC 3 cut(s) 168, 627, 769
BspANI GGCC 8 cut(s) 17, 21, 38, 156, 489, 727, 790, 954
BspCNI CTCAG 3 cut(s) 388, 412, 981
BspLI GGNNCC 3 cut(s) 22, 488, 1179
BspMI ACCTGC 1 cut(s) 802
BspOI GCTAGC 1 cut(s) 903
BspTNI GGTCTC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 769
BsrFI RCCGGY 4 cut(s) 17, 59, 66, 933
BssAI RCCGGY 4 cut(s) 17, 59, 66, 933
BssECI CCNNGG 3 cut(s) 568, 729, 904
BssMI GATC 3 cut(s) 361, 382, 1050
BssT1I CCWWGG 2 cut(s) 729, 904
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 2 cut(s) 82, 587
BstC8I GCNNGC 7 cut(s) 19, 61, 158, 168, 873, 897, 901
BstDEI CTNAG 4 cut(s) 396, 420, 968, 1104
BstDSI CCRYGG 1 cut(s) 904
BstF5I GGATG 3 cut(s) 433, 777, 824
BstH2I RGCGCY 1 cut(s) 328
BstHHI GCGC 3 cut(s) 289, 327, 895
BstKTI GATC 3 cut(s) 364, 385, 1053
BstMAI GTCTC 2 cut(s) 95, 118
BstMBI GATC 3 cut(s) 361, 382, 1050
BstMCI CGRYCG 1 cut(s) 67
BstMWI GCNNNNNNNGC 5 cut(s) 176, 224, 881, 890, 934
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 94, 116, 568
BstV1I GCAGC 4 cut(s) 157, 271, 502, 641
BstV2I GAAGAC 1 cut(s) 1115
BsuI GTATCC 1 cut(s) 1099
BsuRI GGCC 8 cut(s) 17, 21, 38, 156, 489, 727, 790, 954
BtgI CCRYGG 1 cut(s) 904
BtsCI GGATG 3 cut(s) 433, 777, 824
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 7 cut(s) 19, 61, 158, 168, 873, 897, 901
CfoI GCGC 3 cut(s) 289, 327, 895
Cfr10I RCCGGY 4 cut(s) 17, 59, 66, 933
Cfr13I GGNCC 4 cut(s) 20, 36, 487, 726
CviAII CATG 2 cut(s) 464, 905
DdeI CTNAG 4 cut(s) 396, 420, 968, 1104
DpnI GATC 3 cut(s) 363, 384, 1052
DpnII GATC 3 cut(s) 361, 382, 1050
EaeI YGGCCR 1 cut(s) 952
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 729, 904
Eco24I GRGCYC 2 cut(s) 90, 569
Eco31I GGTCTC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 88
Eco88I CYCGRG 2 cut(s) 31, 212
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 2 cut(s) 729, 904
EcoT38I GRGCYC 2 cut(s) 90, 569
ErhI CCWWGG 2 cut(s) 729, 904
FaeI CATG 2 cut(s) 467, 908
FalI AAGNNNNNCTT 4 cut(s) 912, 944, 971, 1003
FaqI GGGAC 2 cut(s) 149, 660
FatI CATG 2 cut(s) 463, 904
FauI CCCGC 1 cut(s) 175
Fnu4HI GCNGC 5 cut(s) 171, 285, 516, 627, 630
FokI GGATG 3 cut(s) 440, 784, 811
FriOI GRGCYC 2 cut(s) 90, 569
FseI GGCCGGCC 1 cut(s) 21
Fsp4HI GCNGC 5 cut(s) 171, 285, 516, 627, 630
FspBI CTAG 7 cut(s) 207, 494, 717, 852, 885, 890, 900
GlaI GCGC 3 cut(s) 288, 326, 894
GluI GCNGC 5 cut(s) 171, 285, 516, 627, 630
GsuI CTGGAG 2 cut(s) 264, 1196
HaeII RGCGCY 1 cut(s) 328
HaeIII GGCC 8 cut(s) 17, 21, 38, 156, 489, 727, 790, 954
HapII CCGG 7 cut(s) 18, 60, 67, 96, 230, 570, 934
HhaI GCGC 3 cut(s) 289, 327, 895
Hin1II CATG 2 cut(s) 467, 908
Hin6I GCGC 3 cut(s) 287, 325, 893
HinP1I GCGC 3 cut(s) 287, 325, 893
HincII GTYRAC 1 cut(s) 481
HindII GTYRAC 1 cut(s) 481
HindIII AAGCTT 1 cut(s) 869
HinfI GANTC 6 cut(s) 26, 292, 401, 471, 782, 1100
HpaI GTTAAC 1 cut(s) 481
HpaII CCGG 7 cut(s) 18, 60, 67, 96, 230, 570, 934
HphI GGTGA 2 cut(s) 194, 584
Hpy166II GTNNAC 2 cut(s) 78, 481
Hpy188I TCNGA 3 cut(s) 92, 1018, 1185
Hpy188III TCNNGA 6 cut(s) 243, 374, 645, 970, 1054, 1195
Hpy8I GTNNAC 2 cut(s) 78, 481
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 4 cut(s) 7, 249, 263, 1051
HpyCH4III ACNGT 2 cut(s) 82, 587
HpyCH4IV ACGT 1 cut(s) 974
HpyCH4V TGCA 6 cut(s) 235, 518, 653, 700, 779, 809
HpyF10VI GCNNNNNNNGC 5 cut(s) 176, 224, 881, 890, 934
HpyF3I CTNAG 4 cut(s) 396, 420, 968, 1104
HpySE526I ACGT 1 cut(s) 974
Hsp92II CATG 2 cut(s) 467, 908
HspAI GCGC 3 cut(s) 287, 325, 893
KroI GCCGGC 2 cut(s) 17, 59
KroNI GCCGGC 2 cut(s) 19, 61
KspAI GTTAAC 1 cut(s) 481
Kzo9I GATC 3 cut(s) 361, 382, 1050
LmnI GCTCC 5 cut(s) 85, 93, 232, 766, 1177
Lsp1109I GCAGC 4 cut(s) 157, 271, 502, 641
LweI GCATC 3 cut(s) 406, 709, 729
MaeI CTAG 7 cut(s) 207, 494, 717, 852, 885, 890, 900
MaeII ACGT 1 cut(s) 974
MalI GATC 3 cut(s) 363, 384, 1052
MbiI CCGCTC 1 cut(s) 769
MboI GATC 3 cut(s) 361, 382, 1050
MboII GAAGA 5 cut(s) 133, 328, 371, 561, 1115
MhlI GDGCHC 2 cut(s) 90, 569
MlsI TGGCCA 1 cut(s) 954
MluCI AATT 3 cut(s) 448, 820, 834
MluNI TGGCCA 1 cut(s) 954
MlyI GAGTC 2 cut(s) 395, 1109
MmeI TCCRAC 3 cut(s) 115, 405, 744
Mox20I TGGCCA 1 cut(s) 954
MroNI GCCGGC 2 cut(s) 17, 59
MscI TGGCCA 1 cut(s) 954
MseI TTAA 7 cut(s) 480, 837, 930, 959, 977, 989, 1077
Msp20I TGGCCA 1 cut(s) 954
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 7 cut(s) 18, 60, 67, 96, 230, 570, 934
MspR9I CCNGG 3 cut(s) 96, 118, 570
Mva1269I GAATGC 2 cut(s) 811, 1152
MvaI CCWGG 1 cut(s) 118
MwoI GCNNNNNNNGC 5 cut(s) 176, 224, 881, 890, 934
NaeI GCCGGC 2 cut(s) 19, 61
NciI CCSGG 2 cut(s) 96, 570
NcoI CCATGG 1 cut(s) 904
NdeII GATC 3 cut(s) 361, 382, 1050
NgoMIV GCCGGC 2 cut(s) 17, 59
NheI GCTAGC 1 cut(s) 899
NlaIII CATG 2 cut(s) 467, 908
NlaIV GGNNCC 3 cut(s) 22, 488, 1179
PaeR7I CTCGAG 2 cut(s) 31, 212
PaqCI CACCTGC 1 cut(s) 802
PctI GAATGC 2 cut(s) 811, 1152
PdiI GCCGGC 2 cut(s) 19, 61
PfeI GAWTC 4 cut(s) 26, 292, 471, 782
PfoI TCCNGGA 1 cut(s) 116
PkrI GCNGC 5 cut(s) 172, 286, 517, 628, 631
PleI GAGTC 2 cut(s) 395, 1108
PpsI GAGTC 2 cut(s) 395, 1108
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 116
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 3 cut(s) 22, 488, 1179
PspPI GGNCC 4 cut(s) 20, 36, 487, 726
PspXI VCTCGAGB 2 cut(s) 31, 212
RigI GGCCGGCC 1 cut(s) 21
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 7 cut(s) 480, 837, 930, 959, 977, 989, 1077
SatI GCNGC 5 cut(s) 171, 285, 516, 627, 630
Sau3AI GATC 3 cut(s) 361, 382, 1050
Sau96I GGNCC 4 cut(s) 20, 36, 487, 726
SchI GAGTC 2 cut(s) 395, 1109
ScrFI CCNGG 3 cut(s) 96, 118, 570
SduI GDGCHC 2 cut(s) 90, 569
SfaNI GCATC 3 cut(s) 406, 709, 729
Sfr274I CTCGAG 2 cut(s) 31, 212
SlaI CTCGAG 2 cut(s) 31, 212
SmlI CTYRAG 2 cut(s) 31, 212
SmoI CTYRAG 2 cut(s) 31, 212
Sse9I AATT 3 cut(s) 448, 820, 834
SsiI CCGC 3 cut(s) 168, 627, 769
SspI AATATT 2 cut(s) 370, 434
SspMI CTAG 7 cut(s) 207, 494, 717, 852, 885, 890, 900
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 3 cut(s) 94, 116, 568
StyI CCWWGG 2 cut(s) 729, 904
TaaI ACNGT 2 cut(s) 82, 587
TaiI ACGT 1 cut(s) 977
TaqI TCGA 5 cut(s) 32, 213, 703, 737, 1136
TasI AATT 3 cut(s) 448, 820, 834
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 4 cut(s) 26, 292, 471, 782
Tru1I TTAA 7 cut(s) 480, 837, 930, 959, 977, 989, 1077
Tru9I TTAA 7 cut(s) 480, 837, 930, 959, 977, 989, 1077
TscAI CASTG 1 cut(s) 181
TseI GCWGC 4 cut(s) 170, 284, 515, 629
TspDTI ATGAA 5 cut(s) 294, 372, 444, 813, 881
TspGWI ACGGA 2 cut(s) 483, 514
TspRI CASTG 1 cut(s) 181
XhoI CTCGAG 2 cut(s) 31, 212
XspI CTAG 7 cut(s) 207, 494, 717, 852, 885, 890, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.