Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003763

Physical Location & Seq

Genomic Coordinates Forward (+)

41087670 .. 41089487

Gene Structure 1818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0264700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGGAGAAGATCATGTGTACACAAAAGATCGGAGGGTTGAATCCATTCCAGATGAGCTCCTTGCATTCTCTGGCTCACACCCACTTAACAGTAATTGGCTCAGTTTAAATGATTCTGTATGCAAGCAGGTCTGCCATTACCCTGATCCTGTAACAAGGTTTAACATTGCACCAGACTTGATGAATCAAGCAAAAGATTATTTGAACAAAACTATATATTACATTTTGAATGAGAACCTCTCCTATCAGCCGCAAAGAAGAAATGTTAATGTTAAATTAGAAGTGCTGCATCAAGCAAACAAACTCGCGGCATCGCGCGGGTTATATCGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006325 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0010468 GO:0016043 GO:0019222 GO:0030874 GO:0030875 GO:0031974 GO:0031981 GO:0034728 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044452 GO:0044454 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0060255 GO:0060968 GO:0065007 GO:0070013 GO:0071824 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HUN

Protein Analysis

110

Amino Acids

12.76

Weight (kDa)

7.8

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G21610 AT1G77310 AT1G77310
fragaria_vesca	FvH4_2g27830 FvH4_2g27830 FvH4_2g27830 FvH4_2g27830
malus_domestica	MD08G1159200.v1.1
prunus_persica	Prupe.1G489600_v2.0.a1 Prupe.1G489600_v2.0.a1 Prupe.1G489600_v2.0.a1
pyrus_communis	pycom348g00040
rosa_chinensis	RchiOBHm_Chr6g0293421 RchiOBHm_Chr6g0296701
rosa_laevigata	RLG00000011667 RLG00000011669
rosa_multiflora	Rmu_sc0001741.1_g000003 Rmu_sc0001741.1_g000007
rosa_roxburghii	Rroxscaffold_7G00171250
rosa_rugosa	Rorug06G0264500 Rorug06G0264600 Rorug06G0264700
rosa_samantha	Rh6AG376100 Rh6BG384400 Rh6CG362400 Rh6CG389500 Rh6CG389700 Rh6DG376900
rosa_wichuraiana	Rw6G032880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	118
AccII	CGCG	3 cut(s)	308, 316, 318
AciI	CCGC	3 cut(s)	251, 308, 318
AclWI	GGATC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	3 cut(s)	41, 205, 229
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw21I	GWGCWC	1 cut(s)	60
AlwI	GGATC	1 cut(s)	140
ApeKI	GCWGC	1 cut(s)	286
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	318
BanII	GRGCYC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	331
BfuAI	ACCTGC	1 cut(s)	118
BisI	GCNGC	3 cut(s)	251, 287, 309
BlsI	GCNGC	3 cut(s)	252, 288, 310
BmsI	GCATC	2 cut(s)	298, 320
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
Bse3DI	GCAATG	1 cut(s)	165
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	115
BseXI	GCAGC	1 cut(s)	273
Bsh1236I	CGCG	3 cut(s)	308, 316, 318
BsiHKAI	GWGCWC	1 cut(s)	60
BsmI	GAATGC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	60
Bsp1407I	TGTACA	1 cut(s)	18
Bsp143I	GATC	3 cut(s)	10, 28, 145
BspACI	CCGC	3 cut(s)	251, 308, 318
BspCNI	CTCAG	1 cut(s)	114
BspFNI	CGCG	3 cut(s)	308, 316, 318
BspMI	ACCTGC	1 cut(s)	118
BspPI	GGATC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	18
BssMI	GATC	3 cut(s)	10, 28, 145
Bst4CI	ACNGT	1 cut(s)	92
BstAUI	TGTACA	1 cut(s)	18
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	101
BstFNI	CGCG	3 cut(s)	308, 316, 318
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	3 cut(s)	13, 31, 148
BstMBI	GATC	3 cut(s)	10, 28, 145
BstUI	CGCG	3 cut(s)	308, 316, 318
BstV1I	GCAGC	1 cut(s)	273
BtgZI	GCGATG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	125
CfoI	GCGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	14
CviJI	RGCY	4 cut(s)	58, 75, 100, 250
CviKI_1	RGCY	4 cut(s)	58, 75, 100, 250
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	3 cut(s)	12, 30, 147
DpnII	GATC	3 cut(s)	10, 28, 145
DraI	TTTAAA	1 cut(s)	108
Ecl136II	GAGCTC	1 cut(s)	58
Eco24I	GRGCYC	1 cut(s)	60
Eco53kI	GAGCTC	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	58
EcoT38I	GRGCYC	1 cut(s)	60
FaeI	CATG	1 cut(s)	17
FaiI	YATR	5 cut(s)	15, 121, 215, 217, 325
FatI	CATG	1 cut(s)	13
FauI	CCCGC	1 cut(s)	311
Fnu4HI	GCNGC	3 cut(s)	251, 287, 309
FriOI	GRGCYC	1 cut(s)	60
Fsp4HI	GCNGC	3 cut(s)	251, 287, 309
FspBI	CTAG	1 cut(s)	331
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	3 cut(s)	251, 287, 309
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	17
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	3 cut(s)	41, 113, 184
Hpy166II	GTNNAC	2 cut(s)	19, 21
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	50
Hpy8I	GTNNAC	2 cut(s)	19, 21
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4V	TGCA	4 cut(s)	65, 123, 170, 289
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	17
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	3 cut(s)	10, 28, 145
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	6 cut(s)	57, 63, 113, 156, 162, 186
Lsp1109I	GCAGC	1 cut(s)	273
LweI	GCATC	2 cut(s)	298, 320
MaeI	CTAG	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	12, 30, 147
MboI	GATC	3 cut(s)	10, 28, 145
MboII	GAAGA	2 cut(s)	20, 270
MhlI	GDGCHC	1 cut(s)	60
MluCI	AATT	2 cut(s)	94, 275
MnlI	CCTC	2 cut(s)	27, 248
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	5 cut(s)	87, 107, 162, 267, 273
Mva1269I	GAATGC	1 cut(s)	65
MvnI	CGCG	3 cut(s)	308, 316, 318
NdeII	GATC	3 cut(s)	10, 28, 145
NlaIII	CATG	1 cut(s)	17
PctI	GAATGC	1 cut(s)	65
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	3 cut(s)	41, 113, 184
PkrI	GCNGC	3 cut(s)	252, 288, 310
Psp124BI	GAGCTC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	60
SaqAI	TTAA	5 cut(s)	87, 107, 162, 267, 273
SatI	GCNGC	3 cut(s)	251, 287, 309
Sau3AI	GATC	3 cut(s)	10, 28, 145
SduI	GDGCHC	1 cut(s)	60
SetI	ASST	4 cut(s)	60, 132, 161, 240
SfaNI	GCATC	2 cut(s)	298, 320
Sse9I	AATT	2 cut(s)	94, 275
SsiI	CCGC	3 cut(s)	251, 308, 318
SspMI	CTAG	1 cut(s)	331
SstI	GAGCTC	1 cut(s)	60
TaaI	ACNGT	1 cut(s)	92
TasI	AATT	2 cut(s)	94, 275
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	2 cut(s)	253, 311
TfiI	GAWTC	3 cut(s)	41, 113, 184
Tru1I	TTAA	5 cut(s)	87, 107, 162, 267, 273
Tru9I	TTAA	5 cut(s)	87, 107, 162, 267, 273
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.